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MCL coexpression mm9:418

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:68561303..68561307,-p@chr10:68561303..68561307
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Mm9::chr10:68587830..68587845,-p@chr10:68587830..68587845
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Mm9::chr10:77816382..77816390,-p@chr10:77816382..77816390
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Mm9::chr10:98152696..98152728,-p@chr10:98152696..98152728
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Mm9::chr12:70870720..70870729,-p@chr12:70870720..70870729
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Mm9::chr14:60145568..60145589,+p@chr14:60145568..60145589
+
Mm9::chr18:84849979..84849983,-p@chr18:84849979..84849983
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Mm9::chr1:189431154..189431187,+p@chr1:189431154..189431187
+
Mm9::chr1:92460728..92460770,+p@chr1:92460728..92460770
+
Mm9::chr2:62250357..62250366,-p11@Dpp4
Mm9::chr3:128919820..128919855,-p@chr3:128919820..128919855
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Mm9::chr8:11282081..11282090,-p@chr8:11282081..11282090
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Mm9::chr8:113605570..113605579,-p8@Clec18a
Mm9::chr8:113605732..113605743,-p7@Clec18a
Mm9::chr8:113605755..113605771,-p4@Clec18a
Mm9::chr8:62931423..62931425,-p@chr8:62931423..62931425
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Mm9::chr8:62982021..62982030,-p1@ENSMUST00000093494
Mm9::chr9:25015356..25015369,-p@chr9:25015356..25015369
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008238exopeptidase activity0.00120704627445353
GO:0042315cytosol nonspecific dipeptidase activity0.00504012927892669
GO:0004287prolyl oligopeptidase activity0.00671980417354201
GO:0046581intercellular canaliculus0.00673351956246092
GO:0004274dipeptidyl-peptidase IV activity0.00673351956246092
GO:0006508proteolysis0.00673351956246092
GO:0008239dipeptidyl-peptidase activity0.00673351956246092
GO:0016806dipeptidyl-peptidase and tripeptidyl-peptidase activity0.00673351956246092
GO:0008233peptidase activity0.00673351956246092
GO:0016805dipeptidase activity0.00705386134082785
GO:0004177aminopeptidase activity0.016936906999236
GO:0004180carboxypeptidase activity0.0176211220623309
GO:0016787hydrolase activity0.0438332217438319
GO:0005911intercellular junction0.0462115008870231
GO:0004252serine-type endopeptidase activity0.0462115008870231
GO:0044267cellular protein metabolic process0.0462115008870231
GO:0008237metallopeptidase activity0.0462115008870231
GO:0044260cellular macromolecule metabolic process0.0462115008870231
GO:0046983protein dimerization activity0.0462115008870231
GO:0008236serine-type peptidase activity0.0462115008870231
GO:0017171serine hydrolase activity0.0462115008870231
GO:0019538protein metabolic process0.0462115008870231



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney6.77e-2514
kidney mesenchyme6.77e-2514
upper urinary tract6.77e-2514
kidney rudiment6.77e-2514
kidney field6.77e-2514
urinary system structure4.52e-1918
renal system5.35e-1819
cavitated compound organ3.72e-1621
compound organ3.47e-0743


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000367447
MA0004.10.191582
MA0006.10.0854592
MA0007.10.181021
MA0009.10.5557
MA0014.10.0191544
MA0017.11.64429
MA0019.10.394308
MA0024.10.516087
MA0025.10.773017
MA0027.12.16618
MA0028.10.0910441
MA0029.11.24219
MA0030.10.502474
MA0031.10.470779
MA0038.10.301835
MA0040.11.39189
MA0041.10.140298
MA0042.10.131965
MA0043.10.644695
MA0046.12.4507
MA0048.10.0131913
MA0050.10.219748
MA0051.10.309072
MA0052.11.40743
MA0055.10.000870896
MA0056.10
MA0057.10.0539481
MA0058.10.127732
MA0059.10.421089
MA0060.10.180016
MA0061.10.218812
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.10.0116947
MA0069.10.574784
MA0070.10.565924
MA0071.11.17286
MA0072.10.558195
MA0073.10.00265878
MA0074.10.264633
MA0076.10.357911
MA0077.11.33139
MA0078.10.336143
MA0081.10.458627
MA0083.10.643958
MA0084.11.1979
MA0087.10.604077
MA0088.10.185982
MA0089.10
MA0090.10.969034
MA0091.10.200988
MA0092.10.167962
MA0093.10.0955883
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.141127
MA0103.10.702489
MA0105.11.07876
MA0106.10.342589
MA0107.10.335745
MA0108.20.413973
MA0109.10
MA0111.10.177475
MA0113.10.855286
MA0114.10.815722
MA0115.11.56023
MA0116.10.603759
MA0117.10.617392
MA0119.11.386
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.0357525
MA0140.10.710317
MA0141.10.37559
MA0142.11.15933
MA0143.10.332773
MA0144.10.478562
MA0145.10.00604759
MA0146.10.00234189
MA0147.10.236435
MA0148.10.203219
MA0149.10.144679
MA0062.20.0237736
MA0035.20.259203
MA0039.20.00331256
MA0138.21.76837
MA0002.20.338271
MA0137.20.371067
MA0104.20.162663
MA0047.20.301217
MA0112.20.370684
MA0065.20.372253
MA0150.11.02262
MA0151.10
MA0152.10.301303
MA0153.10.694211
MA0154.11.97355
MA0155.10.0417374
MA0156.10.110475
MA0157.10.429861
MA0158.10
MA0159.10.0715631
MA0160.10.592791
MA0161.10
MA0162.10.000456116
MA0163.10.000347337
MA0164.10.280556
MA0080.20.337091
MA0018.20.288261
MA0099.20.986085
MA0079.22.79101e-05
MA0102.21.24942
MA0258.11.17038
MA0259.10.221921
MA0442.10
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