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MCL coexpression mm9:560

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Phase1 CAGE Peaks

  Short description
Mm9::chr11:3433469..3433521,- p@chr11:3433469..3433521
-
Mm9::chr11:5050065..5050097,- p4@Emid1
Mm9::chr1:173085643..173085660,+ p1@Mpz
Mm9::chr1:173088898..173088910,+ p@chr1:173088898..173088910
+
Mm9::chr1:173089678..173089690,+ p3@Mpz
Mm9::chr1:173090190..173090207,+ p@chr1:173090190..173090207
+
Mm9::chr1:173090415..173090437,+ p@chr1:173090415..173090437
+
Mm9::chr1:173090439..173090466,+ p@chr1:173090439..173090466
+
Mm9::chr1:173090487..173090490,+ +
p@chr1:173090487..173090490
Mm9::chr1:173090554..173090565,+ p@chr1:173090554..173090565
+
Mm9::chr1:173090774..173090783,+ +
p@chr1:173090774..173090783
Mm9::chr4:134936680..134936694,- p@chr4:134936680..134936694
-
Mm9::chr4:134936726..134936754,- p@chr4:134936726..134936754
-


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0045217intercellular junction maintenance0.0101895474352689
GO:0045216intercellular junction assembly and maintenance0.0203723961177681
GO:0007028cytoplasm organization and biogenesis0.0288466635507794



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Cell Type
Ontology termp-valuen
supportive cell1.61e-083


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.353731
MA0004.10.765938
MA0006.10.14766
MA0007.11.35441
MA0009.10.678286
MA0014.10.288351
MA0017.10.166909
MA0019.10.506787
MA0024.10.636635
MA0025.10.9035
MA0027.12.3071
MA0028.10.155127
MA0029.10.616052
MA0030.11.50787
MA0031.10.588678
MA0038.10.405578
MA0040.10.690239
MA0041.10.218039
MA0042.10.207696
MA0043.10.771094
MA0046.10.712646
MA0048.10.142843
MA0050.10.312673
MA0051.10.413609
MA0052.10.697946
MA0055.10.183408
MA0056.10
MA0057.11.26642
MA0058.10.585652
MA0059.10.212009
MA0060.10.0941959
MA0061.10.363764
MA0063.10
MA0066.10.395746
MA0067.11.01206
MA0068.10.571204
MA0069.10.698271
MA0070.10.688999
MA0071.10.311956
MA0072.10.680902
MA0073.13.05907
MA0074.10.363923
MA0076.10.181159
MA0077.10.660245
MA0078.10.443468
MA0081.10.651709
MA0083.10.77033
MA0084.11.33532
MA0087.10.728855
MA0088.10.394828
MA0089.10
MA0090.10.700834
MA0091.10.290854
MA0092.12.00353
MA0093.10.941822
MA0095.10
MA0098.10
MA0100.10.353762
MA0101.11.1726
MA0103.10.519343
MA0105.11.16392
MA0106.10.450539
MA0107.10.508149
MA0108.20.527977
MA0109.10
MA0111.10.727672
MA0113.11.088
MA0114.11.74894
MA0115.10.773793
MA0116.10.147513
MA0117.10.742722
MA0119.10.626271
MA0122.10.761823
MA0124.10.959967
MA0125.10.887718
MA0130.10
MA0131.10.502588
MA0132.10
MA0133.10
MA0135.10.806261
MA0136.10.38151
MA0139.10.262087
MA0140.10.353662
MA0141.10.555407
MA0142.10.575041
MA0143.10.439766
MA0144.10.1137
MA0145.10.698105
MA0146.10.546896
MA0147.10.386218
MA0148.10.293462
MA0149.10.223436
MA0062.20.0556611
MA0035.20.357786
MA0039.20.0345046
MA0138.20.495254
MA0002.20.266731
MA0137.20.187581
MA0104.20.289861
MA0047.20.404891
MA0112.20.223965
MA0065.21.85775
MA0150.10.267221
MA0151.10
MA0152.10.404987
MA0153.10.822355
MA0154.10.139881
MA0155.11.13617
MA0156.10.180505
MA0157.10.545026
MA0158.10
MA0159.10.803691
MA0160.10.296006
MA0161.10
MA0162.10.137604
MA0163.10.584775
MA0164.10.381832
MA0080.20.170995
MA0018.20.390455
MA0099.20.489441
MA0079.21.00798
MA0102.21.38728
MA0258.10.103004
MA0259.10.367748
MA0442.10