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MCL coexpression mm9:70

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:19868263..19868284,+p8@Mtap7
Mm9::chr10:6486766..6486804,-p@chr10:6486766..6486804
-
Mm9::chr10:6486850..6486860,-p@chr10:6486850..6486860
-
Mm9::chr10:80809447..80809515,-p5@Hmg20b
Mm9::chr10:86371461..86371471,+p2@ENSMUST00000162458
Mm9::chr11:107180560..107180583,-p@chr11:107180560..107180583
-
Mm9::chr11:116586509..116586516,-p@chr11:116586509..116586516
-
Mm9::chr11:120764932..120764940,-p@chr11:120764932..120764940
-
Mm9::chr11:3892492..3892527,+p@chr11:3892492..3892527
+
Mm9::chr11:58775267..58775282,+p1@ENSMUST00000122447
Mm9::chr11:58775412..58775435,+p2@ENSMUST00000122447
Mm9::chr11:61156296..61156305,-p2@Slc47a2
Mm9::chr11:61156311..61156316,-p3@Slc47a2
Mm9::chr11:61156323..61156370,-p1@Slc47a2
Mm9::chr11:69430476..69430487,-p4@Shbg
Mm9::chr11:87218551..87218615,+p1@Tex14
Mm9::chr12:113957448..113957467,+p@chr12:113957448..113957467
+
Mm9::chr12:74018837..74018852,-p2@4930447C04Rik
Mm9::chr12:77084678..77084683,+p@chr12:77084678..77084683
+
Mm9::chr13:112477972..112477982,+p@chr13:112477972..112477982
+
Mm9::chr13:12292672..12292684,-p6@Mtr
Mm9::chr13:23585688..23585699,+p@chr13:23585688..23585699
+
Mm9::chr13:24026303..24026308,+p1@Hist1h2aa
Mm9::chr13:58377008..58377012,-p@chr13:58377008..58377012
-
Mm9::chr14:24655068..24655077,-p@chr14:24655068..24655077
-
Mm9::chr14:55432981..55432993,+p@chr14:55432981..55432993
+
Mm9::chr14:57021542..57021549,+p@chr14:57021542..57021549
+
Mm9::chr14:70829178..70829221,-p1@Piwil2
Mm9::chr15:102275818..102275834,+p1@Amhr2
Mm9::chr15:102277099..102277126,+p@chr15:102277099..102277126
+
Mm9::chr15:35984869..35984883,-p@chr15:35984869..35984883
-
Mm9::chr15:64402726..64402730,-p@chr15:64402726..64402730
-
Mm9::chr15:79435516..79435544,-p1@Dmc1
Mm9::chr15:81602763..81602776,+p@chr15:81602763..81602776
+
Mm9::chr15:91029884..91029893,+p@chr15:91029884..91029893
+
Mm9::chr15:99463233..99463245,-p2@Racgap1
Mm9::chr16:33179212..33179229,+p@chr16:33179212..33179229
+
Mm9::chr17:13102778..13102820,-p1@Pnldc1
Mm9::chr17:26158861..26158880,-p6@Rab11fip3
Mm9::chr17:26158886..26158904,-p8@Rab11fip3
Mm9::chr17:43705239..43705252,+p10@Pla2g7
Mm9::chr17:49649179..49649202,-p@chr17:49649179..49649202
-
Mm9::chr17:49649205..49649222,-p@chr17:49649205..49649222
-
Mm9::chr17:49649263..49649268,-p@chr17:49649263..49649268
-
Mm9::chr17:49668428..49668449,-p@chr17:49668428..49668449
-
Mm9::chr17:49689353..49689360,-p@chr17:49689353..49689360
-
Mm9::chr17:49689426..49689442,-p@chr17:49689426..49689442
-
Mm9::chr17:50432917..50432931,-p1@Dazl
Mm9::chr17:68663935..68663949,+p3@L3mbtl4
Mm9::chr17:84256276..84256289,+p@chr17:84256276..84256289
+
Mm9::chr18:14887856..14887867,-p@chr18:14887856..14887867
-
Mm9::chr18:31858304..31858313,+p@chr18:31858304..31858313
+
Mm9::chr18:35395153..35395171,+p@chr18:35395153..35395171
+
Mm9::chr18:74029632..74029644,+p@chr18:74029632..74029644
+
Mm9::chr19:10166685..10166694,-p@chr19:10166685..10166694
-
Mm9::chr19:10166695..10166707,-p@chr19:10166695..10166707
-
Mm9::chr19:20566755..20566762,+p9@E030003E18Rik
Mm9::chr19:24217365..24217376,-p@chr19:24217365..24217376
-
Mm9::chr19:24217397..24217404,-p@chr19:24217397..24217404
-
Mm9::chr19:25580353..25580364,+p4@Dmrt1
Mm9::chr19:40968642..40968653,+p@chr19:40968642..40968653
+
Mm9::chr1:13216009..13216028,-p@chr1:13216009..13216028
-
Mm9::chr1:13216038..13216051,-p@chr1:13216038..13216051
-
Mm9::chr2:104967357..104967379,+p9@Wt1
Mm9::chr2:104971121..104971138,+p14@Wt1
Mm9::chr2:119838899..119838947,+p@chr2:119838899..119838947
+
Mm9::chr2:148660930..148660931,+p4@Cst9
Mm9::chr2:148660933..148660963,+p2@Cst9
Mm9::chr2:151470928..151470931,-p@chr2:151470928..151470931
-
Mm9::chr2:151496314..151496349,-p@chr2:151496314..151496349
-
Mm9::chr2:152430060..152430086,+p3@Defb36
Mm9::chr2:152430094..152430135,+p1@Defb36
Mm9::chr2:152430137..152430146,+p4@Defb36
Mm9::chr2:152430154..152430175,+p2@Defb36
Mm9::chr2:152695188..152695197,+p10@Tpx2
Mm9::chr2:152695278..152695289,+p4@Tpx2
Mm9::chr2:160409132..160409136,+p1@ENSMUST00000128681
Mm9::chr2:172944903..172944916,-p1@Ctcfl
Mm9::chr2:181313067..181313079,+p4@Gm16119
Mm9::chr2:32985741..32985771,-p@chr2:32985741..32985771
-
Mm9::chr2:32987165..32987178,-p5@Garnl3
Mm9::chr2:84499222..84499239,+p1@Gm13718
Mm9::chr2:84518722..84518777,+p@chr2:84518722..84518777
+
Mm9::chr3:40512838..40512859,+p2@Slc25a31
Mm9::chr3:54985946..54985981,+p1@Sohlh2
Mm9::chr3:82680305..82680345,-p1@Rbm46
Mm9::chr4:107356833..107356836,-p7@Dmrtb1
Mm9::chr4:131476934..131476937,-p@chr4:131476934..131476937
-
Mm9::chr4:142984313..142984319,+p1@Pramel1
Mm9::chr4:59130705..59130715,-p@chr4:59130705..59130715
-
Mm9::chr4:89354729..89354776,+p1@Dmrta1
Mm9::chr4:89354785..89354801,+p2@Dmrta1
Mm9::chr4:89354887..89354888,+p5@Dmrta1
Mm9::chr5:109204040..109204051,-p@chr5:109204040..109204051
-
Mm9::chr5:130210839..130210864,-p@chr5:130210839..130210864
-
Mm9::chr5:135825867..135825910,-p1@Fkbp6
Mm9::chr5:135827139..135827150,-p@chr5:135827139..135827150
-
Mm9::chr5:135827158..135827172,-p@chr5:135827158..135827172
-
Mm9::chr5:135827306..135827308,-p@chr5:135827306..135827308
-
Mm9::chr5:138229081..138229099,+p3@Zcwpw1
Mm9::chr5:92821739..92821750,+p12@Art3
Mm9::chr5:92821756..92821769,+p8@Art3
Mm9::chr6:120726529..120726551,+p@chr6:120726529..120726551
+
Mm9::chr6:129335493..129335504,-p2@Clec12b
Mm9::chr6:129335515..129335528,-p1@Clec12b
Mm9::chr6:129336070..129336080,-p3@Clec12b
Mm9::chr6:18059063..18059084,-p2@Asz1
Mm9::chr6:34870941..34870954,+p1@Stra8
Mm9::chr6:34870971..34870973,+p2@Stra8
Mm9::chr6:49345558..49345593,+p2@Stk31
Mm9::chr6:82896892..82896918,+p1@D6Mm5e
Mm9::chr6:82948823..82948824,+p@chr6:82948823..82948824
+
Mm9::chr6:89046097..89046109,+p1@4933427D06Rik
Mm9::chr6:89046148..89046157,+p2@4933427D06Rik
Mm9::chr7:105261128..105261146,-p@chr7:105261128..105261146
-
Mm9::chr7:106461903..106461933,+p@chr7:106461903..106461933
+
Mm9::chr7:146212586..146212600,-p@chr7:146212586..146212600
-
Mm9::chr7:19703681..19703702,-p1@ENSMUST00000127433
p1@uc009fks.1
Mm9::chr7:19703706..19703753,-p1@ENSMUST00000141380
Mm9::chr7:27959571..27959595,-p4@Rab4b
Mm9::chr7:28403100..28403119,+p@chr7:28403100..28403119
+
Mm9::chr7:29416605..29416613,-p6@C330005M16Rik
Mm9::chr7:29680031..29680053,-p3@Actn4
Mm9::chr7:52741708..52741709,+p8@Tulp2
Mm9::chr7:52741730..52741769,+p2@Tulp2
Mm9::chr8:34627202..34627216,+p1@Tex15
Mm9::chr9:100543944..100543961,+p5@Stag1
Mm9::chr9:100543970..100543983,+p4@Stag1
Mm9::chr9:108334141..108334176,-p@chr9:108334141..108334176
-
Mm9::chr9:110760432..110760442,+p2@Prss50
Mm9::chr9:110760462..110760491,+p1@Prss50
Mm9::chr9:110782015..110782028,-p@chr9:110782015..110782028
-
Mm9::chr9:117949431..117949451,-p@chr9:117949431..117949451
-
Mm9::chr9:26668234..26668282,-p2@Glb1l3
Mm9::chr9:50369366..50369373,-p4@Tex12
Mm9::chr9:50369425..50369436,-p3@Tex12
Mm9::chr9:71567156..71567166,-p@chr9:71567156..71567166
-
Mm9::chr9:75316366..75316392,+p@chr9:75316366..75316392
+
Mm9::chr9:75316396..75316404,+p@chr9:75316396..75316404
+
Mm9::chrX:103416484..103416508,-p4@Taf9b
Mm9::chrX:104863295..104863324,+p1@Tbx22
Mm9::chrX:109008560..109008571,+p@chrX:109008560..109008571
+
Mm9::chrX:111398212..111398223,+p@chrX:111398212..111398223
+
Mm9::chrX:111398256..111398267,+p@chrX:111398256..111398267
+
Mm9::chrX:131011018..131011034,-p2@Taf7l
Mm9::chrX:131797846..131797855,+p@chrX:131797846..131797855
+
Mm9::chrX:132619925..132619942,-p2@Nxf3
Mm9::chrX:133461859..133461868,+p1@1700014N06Rik
Mm9::chrX:135744570..135744585,+p1@Mum1l1
Mm9::chrX:137348001..137348006,-p1@Tex13
Mm9::chrX:146870025..146870033,-p9@Tmem29
Mm9::chrX:146870053..146870084,-p4@Tmem29
Mm9::chrX:147604019..147604030,+p7@ENSMUST00000151778
Mm9::chrX:147604042..147604061,+p2@ENSMUST00000151778
Mm9::chrX:154006915..154006923,-p1@Yy2
Mm9::chrX:154136917..154136945,+p5@Smpx
Mm9::chrX:157520436..157520469,+p@chrX:157520436..157520469
+
Mm9::chrX:157735699..157735710,+p@chrX:157735699..157735710
+
Mm9::chrX:157735725..157735738,+p@chrX:157735725..157735738
+
Mm9::chrX:160944159..160944196,+p2@Asb9
Mm9::chrX:16195689..16195702,+p@chrX:16195689..16195702
+
Mm9::chrX:33565836..33565855,-p@chrX:33565836..33565855
-
Mm9::chrX:33997121..33997125,-p@chrX:33997121..33997125
-
Mm9::chrX:34032615..34032632,-p@chrX:34032615..34032632
-
Mm9::chrX:35474351..35474366,+p1@Rhox13
Mm9::chrX:45255952..45255969,+p@chrX:45255952..45255969
+
Mm9::chrX:49154255..49154260,-p1@Usp26
Mm9::chrX:50788129..50788149,+p2@Etd
Mm9::chrX:50788166..50788192,+p1@Etd
Mm9::chrX:54662324..54662337,+p1@Gm364
Mm9::chrX:55173231..55173238,+p@chrX:55173231..55173238
+
Mm9::chrX:56164649..56164665,+p1@4930550L24Rik
Mm9::chrX:56164680..56164690,+p2@4930550L24Rik
Mm9::chrX:64129336..64129342,-p@chrX:64129336..64129342
-
Mm9::chrX:65298026..65298036,-p@chrX:65298026..65298036
-
Mm9::chrX:6618776..6618784,-p1@Ccnb3
Mm9::chrX:69177772..69177783,+p1@Gm1141
Mm9::chrX:71422591..71422607,+p1@Tktl1
Mm9::chrX:7553670..7553688,-p4@Gata1
Mm9::chrX:7553714..7553733,-p6@Gata1
Mm9::chrX:83437105..83437121,+p1@Nr0b1
Mm9::chrX:83646393..83646403,-p@chrX:83646393..83646403
-
Mm9::chrX:89925362..89925393,-p@chrX:89925362..89925393
-
Mm9::chrX:91168346..91168351,-p@chrX:91168346..91168351
-
Mm9::chrX:92194346..92194357,-p1@ENSMUST00000142240
Mm9::chrX:93160368..93160377,-p@chrX:93160368..93160377
-
Mm9::chrX:93160385..93160398,-p@chrX:93160385..93160398
-
Mm9::chrX:97624245..97624251,+p1@Otud6a
Mm9::chrX:98254953..98254981,-p1@Tex11
Mm9::chrX:98254982..98254993,-p2@Tex11
Mm9::chrX:98891172..98891180,+p@chrX:98891172..98891180
+
Mm9::chrX:98989714..98989726,-p@chrX:98989714..98989726
-
Mm9::chrX:98989983..98990019,+p1@8030474K03Rik
Mm9::chrY:155026..155076,+p1@Ube1y1
Mm9::chrY:155089..155099,+p2@Ube1y1
Mm9::chrY:796214..796225,-p1@Usp9y


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007548sex differentiation2.03578009326924e-06
GO:0000003reproduction2.16497557013415e-06
GO:0003006reproductive developmental process2.16497557013415e-06
GO:0007276gamete generation1.51226305277813e-05
GO:0019953sexual reproduction4.49438179970822e-05
GO:0007530sex determination7.60584778234405e-05
GO:0007281germ cell development0.000127945363868857
GO:0007283spermatogenesis0.000187032866444009
GO:0048232male gamete generation0.000187032866444009
GO:0051327M phase of meiotic cell cycle0.000187032866444009
GO:0007126meiosis0.000187032866444009
GO:0051321meiotic cell cycle0.000187032866444009
GO:0022414reproductive process0.000192994690355212
GO:0008406gonad development0.000858847084355522
GO:0048608reproductive structure development0.000934685543343138
GO:0045137development of primary sexual characteristics0.00125415041341918
GO:0007127meiosis I0.00300326324239682
GO:0005844polysome0.00300326324239682
GO:0007131meiotic recombination0.00565216074923919
GO:0016591DNA-directed RNA polymerase II, holoenzyme0.0137993686951777
GO:0000279M phase0.019738458753447
GO:0008584male gonad development0.026546625307394
GO:0005669transcription factor TFIID complex0.026546625307394
GO:0001541ovarian follicle development0.028737541994697
GO:0022403cell cycle phase0.0328105114990602
GO:0007049cell cycle0.0328105114990602
GO:0048477oogenesis0.0354014626951595
GO:0046546development of primary male sexual characteristics0.0365871959106186
GO:0045836positive regulation of meiosis0.0365871959106186
GO:0031143pseudopodium0.0365871959106186
GO:0006311meiotic gene conversion0.0365871959106186
GO:0033313meiotic cell cycle checkpoint0.0365871959106186
GO:0042138meiotic DNA double-strand break formation0.0365871959106186
GO:0048549positive regulation of pinocytosis0.0365871959106186
GO:0010032meiotic chromosome condensation0.0365871959106186
GO:0000400four-way junction DNA binding0.0365871959106186
GO:0048548regulation of pinocytosis0.0365871959106186
GO:0033315meiotic cell cycle DNA replication checkpoint0.0365871959106186
GO:0005026transforming growth factor beta receptor activity, type II0.0365871959106186
GO:0000332template for synthesis of G-rich strand of telomere DNA activity0.0365871959106186
GO:0002111BRCA2-BRAF35 complex0.0365871959106186
GO:0005697telomerase holoenzyme complex0.0365871959106186
GO:0046661male sex differentiation0.0385365912660113
GO:0022601menstrual cycle phase0.0434627625269996
GO:0043283biopolymer metabolic process0.043735709260655
GO:0022602menstrual cycle process0.043735709260655
GO:0003729mRNA binding0.043735709260655
GO:0003700transcription factor activity0.0453837195440103
GO:0003677DNA binding0.0487040819257248
GO:0008585female gonad development0.0487040819257248
GO:0046660female sex differentiation0.0487040819257248
GO:0007292female gamete generation0.0487040819257248
GO:0046545development of primary female sexual characteristics0.0487040819257248
GO:0008494translation activator activity0.0487040819257248
GO:0045948positive regulation of translational initiation0.0487040819257248
GO:0003720telomerase activity0.0487040819257248
GO:0003730mRNA 3'-UTR binding0.0487040819257248
GO:0001823mesonephros development0.0487040819257248
GO:0060008Sertoli cell differentiation0.0487040819257248
GO:0000737DNA catabolic process, endonucleolytic0.0487040819257248
GO:0009341beta-galactosidase complex0.0487040819257248
GO:00082472-acetyl-1-alkylglycerophosphocholine esterase complex0.0487040819257248
GO:0000217DNA secondary structure binding0.0487040819257248
GO:0033327Leydig cell differentiation0.0487040819257248
GO:0042788polysomal ribosome0.0487040819257248
GO:0031323regulation of cellular metabolic process0.0498492540149218



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
testis2.14e-4714
male reproductive organ3.71e-4415
gonad2.06e-4318
gonad primordium2.06e-4318
male organism2.54e-4116
male reproductive system2.54e-4116
external genitalia8.10e-3917
indifferent external genitalia8.10e-3917
indifferent gonad8.10e-3917
reproductive organ3.24e-3224
reproductive structure1.25e-2926
reproductive system1.25e-2926
body cavity2.20e-2037
body cavity or lining2.20e-2037
body cavity precursor8.29e-2038
anatomical cavity2.92e-1939
anatomical space1.10e-1257
immaterial anatomical entity1.08e-0879


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.17922e-05
MA0004.14.34033
MA0006.11.77388
MA0007.10.29586
MA0009.10.1623
MA0014.10.0161468
MA0017.11.98559
MA0019.10.686121
MA0024.12.58131
MA0025.10.838918
MA0027.11.14379
MA0028.10.552762
MA0029.10.391408
MA0030.10.0380102
MA0031.10.0274857
MA0038.11.97574
MA0040.10.17515
MA0041.10.478644
MA0042.10.527999
MA0043.10.511886
MA0046.10.3892
MA0048.10.0471303
MA0050.10.171631
MA0051.10.343677
MA0052.10.0705353
MA0055.10.00471635
MA0056.10
MA0057.10.0501266
MA0058.13.43023
MA0059.13.04304
MA0060.15.00346
MA0061.10.0753075
MA0063.10
MA0066.10.105106
MA0067.10.340684
MA0068.10.310056
MA0069.10.361352
MA0070.10.173793
MA0071.12.10924
MA0072.10.165067
MA0073.11.66494e-09
MA0074.10.125837
MA0076.10.691886
MA0077.11.07788
MA0078.10.441784
MA0081.10.108059
MA0083.10.274546
MA0084.10.292483
MA0087.10.689214
MA0088.10.25641
MA0089.10
MA0090.10.906391
MA0091.10.00750648
MA0092.10.160197
MA0093.16.61229
MA0095.10
MA0098.10
MA0100.10.953088
MA0101.10.0283749
MA0103.10.110802
MA0105.10.00539045
MA0106.10.466701
MA0107.10.00559606
MA0108.20.777813
MA0109.10
MA0111.10.125989
MA0113.11.84148
MA0114.11.1499
MA0115.11.6275
MA0116.10.293043
MA0117.10.095854
MA0119.11.55824
MA0122.10.108055
MA0124.10.281938
MA0125.10.796782
MA0130.10
MA0131.10.0867699
MA0132.10
MA0133.10
MA0135.10.0349041
MA0136.10.0430446
MA0139.12.83211
MA0140.11.72674
MA0141.14.05385
MA0142.10.00411651
MA0143.10.0421334
MA0144.10.267726
MA0145.10.039697
MA0146.10.0127861
MA0147.13.46199
MA0148.10.412177
MA0149.10.0318324
MA0062.20.141561
MA0035.23.14542
MA0039.20.0368598
MA0138.20.874241
MA0002.20.0272976
MA0137.20.100694
MA0104.22.42176
MA0047.20.202256
MA0112.20.0209045
MA0065.20.560867
MA0150.10.010623
MA0151.10
MA0152.11.08805
MA0153.10.152207
MA0154.10.0579666
MA0155.10.0663435
MA0156.10.437367
MA0157.10.128864
MA0158.10
MA0159.10.0237763
MA0160.12.49598
MA0161.10
MA0162.10.00103288
MA0163.10.0700332
MA0164.10.927167
MA0080.20.367895
MA0018.20.0204634
MA0099.20.0757196
MA0079.21.30401e-10
MA0102.20.329767
MA0258.10.0719175
MA0259.11.21705
MA0442.10
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