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MCL coexpression mm9:79

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127520357..127520365,+p1@Atp5b
Mm9::chr10:127774795..127774815,+p2@Cs
Mm9::chr10:22063232..22063247,+p@chr10:22063232..22063247
+
Mm9::chr10:42198205..42198249,-p1@Lace1
Mm9::chr10:43621588..43621651,+p1@Rtn4ip1
Mm9::chr10:43621661..43621673,+p2@Rtn4ip1
Mm9::chr10:77632471..77632537,-p1@D10Jhu81e
p1@LOC100046684
Mm9::chr10:79605154..79605168,+p3@Atp5d
Mm9::chr10:79712186..79712213,+p1@Ndufs7
Mm9::chr10:90586700..90586789,-p1@LOC100046151
p1@Slc25a3
Mm9::chr10:94964555..94964587,-p1@Mrpl42
Mm9::chr10:94964591..94964600,-p2@Mrpl42
Mm9::chr11:105927369..105927414,+p1@Taco1
Mm9::chr11:115281246..115281267,-p1@Atp5h
Mm9::chr11:120319352..120319396,-p1@1810049H13Rik
Mm9::chr11:3371499..3371525,-p1@ENSMUST00000120551
Mm9::chr11:3409227..3409230,-p@chr11:3409227..3409230
-
Mm9::chr11:52174571..52174628,+p1@Vdac1
Mm9::chr11:6191610..6191658,+p1@Ogdh
Mm9::chr11:6191967..6192000,+p7@Ogdh
Mm9::chr11:6192056..6192070,+p10@Ogdh
Mm9::chr11:6192087..6192114,+p9@Ogdh
Mm9::chr11:63892946..63892982,-p1@Cox10
Mm9::chr11:70460391..70460469,-p2@Slc25a11
Mm9::chr11:95936910..95936950,-p1@Atp5g1
Mm9::chr12:10397856..10397877,+p@chr12:10397856..10397877
+
Mm9::chr12:32036233..32036286,-p1@Dld
Mm9::chr12:85626286..85626364,+p1@Ptgr2
Mm9::chr12:85702979..85703006,+p1@Coq6
Mm9::chr12:86528796..86528812,-p@chr12:86528796..86528812
-
Mm9::chr12:87702062..87702081,+p4@Esrrb
Mm9::chr13:101514044..101514084,-p2@Mrps36
Mm9::chr13:108204822..108204844,-p2@Apoo
Mm9::chr13:115178265..115178297,-p1@Ndufs4
Mm9::chr13:24923278..24923387,-p1@Acot13
Mm9::chr13:30637123..30637215,-p1@Uqcrfs1
Mm9::chr13:67006258..67006306,-p1@Uqcrb
Mm9::chr13:73465890..73465915,-p1@Gm6415
p1@LOC631040
p1@Ndufs6
Mm9::chr13:74487654..74487695,-p1@Sdha
Mm9::chr13:86186377..86186405,-p1@Cox7c
p1@LOC100048613
Mm9::chr14:122580927..122580947,+p1@Clybl
Mm9::chr14:32898939..32898986,+p2@Oxnad1
Mm9::chr14:54980714..54980819,+p@chr14:54980714..54980819
+
Mm9::chr14:73952587..73952618,+p1@Sucla2
Mm9::chr15:35867941..35867958,-p2@Cox6c
p2@Gm6265
Mm9::chr15:58765329..58765391,+p1@Ndufb9
Mm9::chr15:76173934..76173988,+p1@Cyc1
Mm9::chr15:76174002..76174013,+p2@Cyc1
Mm9::chr15:81702900..81702944,+p1@Aco2
Mm9::chr15:97976056..97976098,-p1@Asb8
Mm9::chr16:37654494..37654536,-p1@Gm3244
p1@Gm3873
p1@Ndufb4
Mm9::chr16:38347072..38347136,+p1@Cox17
Mm9::chr16:42955703..42955721,+p1@BC002163
Mm9::chr16:84835093..84835119,-p1@Atp5j
Mm9::chr16:84835121..84835130,-p5@Atp5j
Mm9::chr17:13108868..13108910,-p2@Mrpl18
Mm9::chr17:13200790..13200820,+p2@Sod2
Mm9::chr17:13200821..13200854,+p1@Sod2
Mm9::chr17:13209602..13209606,+p@chr17:13209602..13209606
+
Mm9::chr17:17585824..17585848,+p3@Lix1
Mm9::chr17:24861319..24861400,-p1@Ndufb10
Mm9::chr17:24987027..24987063,-p2@Fahd1
Mm9::chr17:66450806..66450874,-p1@Ndufv2
Mm9::chr18:61560017..61560103,-p1@Ppargc1b
Mm9::chr18:61560117..61560124,-p3@Ppargc1b
Mm9::chr18:67608737..67608859,-p1@Afg3l2
Mm9::chr18:68459848..68459882,-p1@4933403F05Rik
Mm9::chr18:68459894..68459913,-p3@4933403F05Rik
Mm9::chr18:78012723..78012745,+p1@Atp5a1
Mm9::chr18:78017273..78017311,-p@chr18:78017273..78017311
-
Mm9::chr19:3912711..3912722,-p2@Ndufs8
Mm9::chr19:3912733..3912779,-p1@Ndufs8
Mm9::chr19:4012656..4012736,-p1@Ndufv1
Mm9::chr19:44629888..44629927,-p1@Ndufb8
Mm9::chr19:47165100..47165145,-p1@Gm14539
p1@LOC100504912
p1@Usmg5
Mm9::chr1:16655270..16655345,+p1@Tmem70
Mm9::chr1:173080723..173080740,-p1@Sdhc
Mm9::chr1:173177227..173177252,-p1@Ndufs2
Mm9::chr1:177555711..177555744,-p1@Fh1
Mm9::chr1:191651092..191651107,+p@chr1:191651092..191651107
+
Mm9::chr1:36748375..36748399,+p1@Cox5b
p1@LOC100046079
Mm9::chr1:58643435..58643469,+p1@Ndufb3
Mm9::chr1:63223227..63223281,-p1@Ndufs1
Mm9::chr1:94370313..94370376,-p1@Ndufa10
Mm9::chr1:94370378..94370385,-p2@Ndufa10
Mm9::chr1:95628538..95628549,-p@chr1:95628538..95628549
-
Mm9::chr2:10002032..10002073,-p1@Atp5c1
Mm9::chr2:102913606..102913649,-p1@Pdhx
Mm9::chr2:119488492..119488571,-p1@Ndufaf1
Mm9::chr2:127095944..127096007,+p1@Stard7
Mm9::chr2:130110158..130110187,-p1@Idh3b
Mm9::chr2:155207544..155207620,+p1@Trp53inp2
Mm9::chr2:155207922..155208010,+p2@Trp53inp2
Mm9::chr2:155208020..155208035,+p3@Trp53inp2
Mm9::chr2:155755774..155755802,-p1@Uqcc
Mm9::chr2:30027063..30027074,+p2@Endog
Mm9::chr2:30027077..30027084,+p6@Endog
Mm9::chr2:32251774..32251800,+p1@Ptges2
Mm9::chr2:35904797..35904877,-p1@Ndufa8
Mm9::chr2:90744806..90744884,-p1@Gm12251
p1@Ndufs3
Mm9::chr3:105762130..105762155,-p2@Atp5f1
Mm9::chr3:105762170..105762198,-p1@Atp5f1
Mm9::chr3:14802603..14802637,-p@chr3:14802603..14802637
-
Mm9::chr3:32428479..32428482,+p5@Mfn1
Mm9::chr3:32428560..32428565,+p6@Mfn1
Mm9::chr3:32635967..32636004,+p1@Ndufb5
Mm9::chr3:51212847..51212906,-p1@Ndufc1
Mm9::chr3:67234023..67234106,+p1@Gfm1
Mm9::chr4:115747605..115747622,-p2@Uqcrh
Mm9::chr4:116380917..116380961,-p1@Mmachc
Mm9::chr4:138686648..138686776,-p3@Minos1
Mm9::chr4:140517287..140517317,+p1@Sdhb
Mm9::chr4:147278789..147278819,-p1@Mfn2
Mm9::chr5:115729682..115729725,+p1@Coq5
Mm9::chr5:89104215..89104252,-p8@Grsf1
Mm9::chr6:11857419..11857484,-p1@Ndufa4
Mm9::chr6:125046762..125046791,+p5@Chd4
Mm9::chr6:126799127..126799159,-p1@Ndufa9
Mm9::chr6:142456430..142456482,-p1@Gm5514
p1@Ldhb
Mm9::chr6:146991277..146991319,+p1@Mrps35
Mm9::chr6:24477546..24477585,-p1@Ndufa5
Mm9::chr6:33010172..33010252,-p1@Chchd3
Mm9::chr6:52590264..52590275,-p3@Hibadh
Mm9::chr6:71781319..71781404,+p1@Immt
Mm9::chr6:83299445..83299490,+p1@Bola3
Mm9::chr7:104548635..104548646,+p2@LOC635087
p2@LOC675851
p2@Ndufc2
Mm9::chr7:125676812..125676847,-p1@Coq7
Mm9::chr7:127778714..127778765,+p1@Uqcrc2
Mm9::chr7:129245341..129245373,-p1@Gm4459
p1@Ndufab1
Mm9::chr7:147288225..147288256,-p2@1810014F10Rik
Mm9::chr7:30969179..30969200,+p2@Cox7a1
Mm9::chr7:3568959..3568991,+p1@Ndufa3
Mm9::chr7:71537606..71537617,+p3@Mcee
Mm9::chr7:97605677..97605723,-p1@Tmem126a
Mm9::chr7:98120937..98120952,+p@chr7:98120937..98120952
+
Mm9::chr8:109572060..109572072,-p1@ENSMUST00000055316
Mm9::chr8:123192212..123192218,+p2@Cox4i1
Mm9::chr8:23704207..23704248,-p1@Vdac3
Mm9::chr8:4275886..4275915,-p1@Timm44
Mm9::chr8:97362288..97362325,+p1@Coq9
Mm9::chr9:108838698..108838728,+p1@Uqcrc1
Mm9::chr9:21889835..21889887,-p1@Ecsit
Mm9::chr9:50411897..50411929,-p1@Sdhd
Mm9::chr9:50467569..50467582,-p2@Dlat
Mm9::chr9:50467598..50467669,-p1@Dlat
Mm9::chr9:54434257..54434319,+p1@Idh3a
Mm9::chr9:71333307..71333377,-p@chr9:71333307..71333377
-
Mm9::chr9:79607274..79607299,-p@chr9:79607274..79607299
-
Mm9::chrM:6037..6048,+p@chrM:6037..6048
+
Mm9::chrX:101577980..101577990,-p1@ENSMUST00000120999
Mm9::chrX:130811508..130811519,-p2@Trmt2b
Mm9::chrX:156576307..156576367,-p2@Pdha1
Mm9::chrX:20158460..20158497,-p1@ENSMUST00000096481
p1@ENSMUST00000117527
Mm9::chrX:34731099..34731143,-p1@Ndufa1
Mm9::chrX:91612451..91612473,+p1@Apoo-ps
p1@Apoo
Mm9::chrX:91612486..91612504,+p3@Apoo


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


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