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UBERON:0000966

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Name:retina
Namespace:FANTOM
Definition:"The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
Xrefs:
links:

AAO:0010352
BTO:0001175
EFO:0000832
EHDAA2:0001627
EHDAA:4757
EMAPA:17168
EV:0100348
FMA:58301
GAID:755
[ Human_eye_cross-sectional_view_grayscale.png Human_eye_cross-sectional_view_grayscale.png]
[ 200px-Human_eye_cross-sectional_view_grayscale.png 200px-Human_eye_cross-sectional_view_grayscale.png]
MA:0000276
MAT:0000142
MESH:A.09.371.729
MIAA:0000142
ncithesaurus:Retina
NIF_GrossAnatomy:birnlex_1153
NIF_GrossAnatomy:birnlex_1156
OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
SCTID:181171005
TAO:0000152
VHOG:0000229
XAO:0000009

ZFA:0000152
Synonyms: "inner layer of eyeball" EXACT []
"Netzhaut" RELATED [BTO:0001175]
"tunica interna of eyeball" EXACT []
Comments:Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods
Alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005388(photoreceptor array)
develops_from:UBERON:0003072(optic cup)
part_of:UBERON:0001802(posterior segment of eyeball)



Children

is a:FF:10440-106E8 ()
derives from:FF:0010030 (human retina - adult sample),FF:0102919 (retinoblastoma cell line sample)
part of:UBERON:0001781 (layer of retina),CL:0002585 (retinal blood vessel endothelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000966 (retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.07e-130FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23p2@SERPINE3
1.07e-130FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23p@chr13:99135322..99135327, -
1.07e-130FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23p@chr13:99135322..99135327, -
1.07e-130FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23p2@SERPINE3
5.17e-105FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13p@chr11:109990513..109990520, -
5.17e-105FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13p@chr11:109990513..109990520, -
1.51e-104FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0p@chr5:70308745..70308754, -
1.51e-104FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0p@chr5:70308745..70308754, -
4.11e-102FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4p@chr3:69928404..69928418, +
4.11e-102FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4p@chr3:69928404..69928418, +
1.83e-98FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29p@chr1:147150847..147150854, -
1.83e-98FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29p5@ENST00000437916
1.83e-98FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29p@chr1:147150847..147150854, -
1.83e-98FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29p9@C11orf9
1.83e-98FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29p9@C11orf9
1.83e-98FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29p5@ENST00000437916
7.0e-88FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ecp2@C11orf9
7.0e-88FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ecp2@C11orf9
1.37e-87FFCP PHASE2:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0fp@chr17:932340..932343, -
1.37e-87FFCP PHASE1:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0fp@chr17:932340..932343, -
1.22e-75FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6p1@SERPINE3
1.22e-75FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6p1@SERPINE3
2.63e-75FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143p17@TTLL4
2.63e-75FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143p17@TTLL4
2.83e-66FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90p@chr21:45724075..45724081, +
2.83e-66FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90p@chr18:39859562..39859566, +
2.83e-66FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90p@chr3:39827273..39827281, +
2.83e-66FFCP PHASE2:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90p@chr1:153476496..153476503, +
2.83e-66FFCP PHASE1:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90p@chr12:208274..208283, +
2.83e-66FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90p@chr2:165170873..165170919, -
2.83e-66FFCP PHASE2:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90p@chr12:208274..208283, +
2.83e-66FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90p@chr18:39859562..39859566, +
2.83e-66FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90p@chr13:51913893..51913901, +
2.83e-66FFCP PHASE1:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90p@chr22:41734286..41734290, +
2.83e-66FFCP PHASE1:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90p@chr11:639444..639447, +
2.83e-66FFCP PHASE1:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90p@chr12:208292..208304, +
2.83e-66FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90p@chr5:149250331..149250335, -
2.83e-66FFCP PHASE1:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90p@chr13:99135420..99135443, -
2.83e-66FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90p@chr13:51913893..51913901, +
2.83e-66FFCP PHASE2:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90p9@INPP5K
2.83e-66FFCP PHASE2:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90p@chr12:208292..208304, +
2.83e-66FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90p@chr21:45724075..45724081, +
2.83e-66FFCP PHASE2:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90p@chr13:99135420..99135443, -
2.83e-66FFCP PHASE2:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90p@chr11:639444..639447, +
2.83e-66FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90p3@ENST00000558781
2.83e-66FFCP PHASE1:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90p@chr1:153476496..153476503, +
2.83e-66FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90p@chr3:39827273..39827281, +
2.83e-66FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90p@chr2:165170873..165170919, -
2.83e-66FFCP PHASE1:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90p9@INPP5K
2.83e-66FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90p3@ENST00000558781
2.83e-66FFCP PHASE2:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90p@chr22:41734286..41734290, +
2.83e-66FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90p@chr5:149250331..149250335, -
4.34e-66FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49p@chr3:69928426..69928436, +
4.34e-66FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49p@chr3:69928426..69928436, +
5.13e-66FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390p@chr1:43533230..43533270, +
5.13e-66FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390p@chr1:43533230..43533270, +
1.01e-59FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797p@chr9:140088882..140088898, -
1.01e-59FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797p@chr9:140088882..140088898, -
1.82e-59FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599fp@chr16:84228961..84228982, +
1.82e-59FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599fp@chr16:84228961..84228982, +
1.82e-59FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599fp5@MFRP, p6@C1QTNF5
1.82e-59FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599fp5@MFRP, p6@C1QTNF5
6.44e-59FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36dfp5@CLIC6
6.44e-59FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36dfp5@CLIC6
1.58e-53FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573p@chr13:99135278..99135298, -
1.58e-53FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573p@chr13:99135278..99135298, -
9.03e-53FFCP PHASE2:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54fp4@TMCC2
9.03e-53FFCP PHASE1:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54fp4@TMCC2
3.84e-50FFCP PHASE2:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cdp@chr17:932596..932605, -
3.84e-50FFCP PHASE1:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cdp@chr17:932596..932605, -
5.37e-50FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028p1@SLC16A8
5.37e-50FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028p1@SLC16A8
8.88e-50FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8p@chr2:235591306..235591328, +
8.88e-50FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8p@chr2:235591306..235591328, +
1.05e-49FFCP PHASE1:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086bp1@DIAPH2-AS1
1.05e-49FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086bp@chr3:183733654..183733680, -
1.05e-49FFCP PHASE2:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086bp1@DIAPH2-AS1
1.05e-49FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086bp@chr3:183733654..183733680, -
1.24e-49FFCP PHASE2:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606cp@chr16:89441550..89441568, -
1.24e-49FFCP PHASE1:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606cp@chr16:89441550..89441568, -
1.73e-49FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328p@chr3:98672197..98672201, +
1.73e-49FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328p@chr3:98672197..98672201, +
5.28e-49FFCP PHASE1:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3fp4@OTX2
5.28e-49FFCP PHASE2:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3fp4@OTX2
9.58e-49FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2p@chr14:87636652..87636657, -
9.58e-49FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2p@chr14:87636652..87636657, -
1.38e-48FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2p@chr3:69928371..69928385, +
1.38e-48FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2p@chr3:69928371..69928385, +
2.88e-48FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61cp13@NAV3
2.88e-48FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61cp13@NAV3
3.25e-48FFCP PHASE2:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621p1@SLC1A7
3.25e-48FFCP PHASE1:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621p1@SLC1A7
6.65e-45FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004p3@CLIC6
6.65e-45FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004p3@CLIC6
9.76e-45FFCP PHASE1:Hg19::chr7:129028525..129028531,+#_b9c6a089e1fe6b5c7a48fb230064ad86p32@AHCYL2
9.76e-45FFCP PHASE2:Hg19::chr21:16031159..16031171,-#_b9c6a089e1fe6b5c7a48fb230064ad86p3@LOC388813
9.76e-45FFCP PHASE1:Hg19::chr5:82640256..82640260,+#_b9c6a089e1fe6b5c7a48fb230064ad86p@chr5:82640256..82640260, +
9.76e-45FFCP PHASE1:Hg19::chr2:219610770..219610777,+#_b9c6a089e1fe6b5c7a48fb230064ad86p19@TTLL4
9.76e-45FFCP PHASE2:Hg19::chr9:111764519..111764525,-#_b9c6a089e1fe6b5c7a48fb230064ad86p@chr9:111764519..111764525, -
9.76e-45FFCP PHASE2:Hg19::chr7:129028525..129028531,+#_b9c6a089e1fe6b5c7a48fb230064ad86p32@AHCYL2










Property "Property value" (as page type) with input value "UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.