UBERON:0000966
From FANTOM5_SSTAR
Name: | retina | ||
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Namespace: | FANTOM | ||
Definition: | "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator] | ||
Xrefs: |
| ||
Synonyms: |
"inner layer of eyeball" EXACT [] "Netzhaut" RELATED [BTO:0001175] "tunica interna of eyeball" EXACT [] | ||
Comments: | Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods | ||
Alt_id: | UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0005388(photoreceptor array) |
---|---|
develops_from: | UBERON:0003072(optic cup) |
part_of: | UBERON:0001802(posterior segment of eyeball) |
Children
is a: | FF:10440-106E8 () |
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derives from: | FF:0010030 (human retina - adult sample),FF:0102919 (retinoblastoma cell line sample) |
part of: | UBERON:0001781 (layer of retina),CL:0002585 (retinal blood vessel endothelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10440-106E8
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10671-109D5
- 10672-109D6
- 10673-109D7
- 10674-109D8
- 10675-109D9
- 10676-109E1
- 10677-109E2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000966 (retina), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.07e-130 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23 | p2@SERPINE3 |
1.07e-130 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23 | p@chr13:99135322..99135327, - |
1.07e-130 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_361d665c148ed44e98e04e377fe01f23 | p2@SERPINE3 |
1.07e-130 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_361d665c148ed44e98e04e377fe01f23 | p@chr13:99135322..99135327, - |
5.17e-105 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13 | p@chr11:109990513..109990520, - |
5.17e-105 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_78f438f6297774ae5d1bbfb0a3520f13 | p@chr11:109990513..109990520, - |
1.51e-104 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0 | p@chr5:70308745..70308754, - |
1.51e-104 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_70a472b96485d69682dcd028a90ec6b0 | p@chr5:70308745..70308754, - |
4.11e-102 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4 | p@chr3:69928404..69928418, + |
4.11e-102 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_68699146f66a0b1dce02e682dd857bf4 | p@chr3:69928404..69928418, + |
1.83e-98 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29 | p9@C11orf9 |
1.83e-98 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29 | p@chr1:147150847..147150854, - |
1.83e-98 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29 | p5@ENST00000437916 |
1.83e-98 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_27fd91da61d856b34b4eb6ed367d4c29 | p@chr1:147150847..147150854, - |
1.83e-98 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_27fd91da61d856b34b4eb6ed367d4c29 | p5@ENST00000437916 |
1.83e-98 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_27fd91da61d856b34b4eb6ed367d4c29 | p9@C11orf9 |
7.0e-88 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ec | p2@C11orf9 |
7.0e-88 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_caa391d8529244369bb10a2a8e5138ec | p2@C11orf9 |
1.37e-87 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0f | p@chr17:932340..932343, - |
1.37e-87 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_04ac9f38903e8dc2e7f3c1e1cb9c0e0f | p@chr17:932340..932343, - |
1.22e-75 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6 | p1@SERPINE3 |
1.22e-75 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_39f7fa8ca300d8d8ac47c9459ce281d6 | p1@SERPINE3 |
2.63e-75 | FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143 | p17@TTLL4 |
2.63e-75 | FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_98aff972ff69529267a5dbe51023e143 | p17@TTLL4 |
2.83e-66 | FFCP PHASE1:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90 | p@chr22:41734286..41734290, + |
2.83e-66 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90 | p@chr18:39859562..39859566, + |
2.83e-66 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90 | p@chr13:51913893..51913901, + |
2.83e-66 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_5e143518337d08e804fb801ff158fe90 | +, p@chr18:39859562..39859566 |
2.83e-66 | FFCP PHASE1:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208292..208304, + |
2.83e-66 | FFCP PHASE2:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90 | p9@INPP5K |
2.83e-66 | FFCP PHASE1:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90 | p@chr13:99135420..99135443, - |
2.83e-66 | FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90 | p@chr2:165170873..165170919, - |
2.83e-66 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90 | p@chr21:45724075..45724081, + |
2.83e-66 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90 | p@chr3:39827273..39827281, + |
2.83e-66 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_5e143518337d08e804fb801ff158fe90 | p@chr3:39827273..39827281, + |
2.83e-66 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90 | p3@ENST00000558781 |
2.83e-66 | FFCP PHASE2:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208274..208283, + |
2.83e-66 | FFCP PHASE1:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90 | p@chr1:153476496..153476503, + |
2.83e-66 | FFCP PHASE1:Hg19::chr17:1420239..1420279,-#_5e143518337d08e804fb801ff158fe90 | p9@INPP5K |
2.83e-66 | FFCP PHASE2:Hg19::chr22:41734286..41734290,+#_5e143518337d08e804fb801ff158fe90 | p@chr22:41734286..41734290, + |
2.83e-66 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_5e143518337d08e804fb801ff158fe90 | p@chr13:51913893..51913901, + |
2.83e-66 | FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_5e143518337d08e804fb801ff158fe90 | p@chr21:45724075..45724081, + |
2.83e-66 | FFCP PHASE2:Hg19::chr13:99135420..99135443,-#_5e143518337d08e804fb801ff158fe90 | p@chr13:99135420..99135443, - |
2.83e-66 | FFCP PHASE2:Hg19::chr12:208292..208304,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208292..208304, + |
2.83e-66 | FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5e143518337d08e804fb801ff158fe90 | p3@ENST00000558781 |
2.83e-66 | FFCP PHASE2:Hg19::chr1:153476496..153476503,+#_5e143518337d08e804fb801ff158fe90 | p@chr1:153476496..153476503, + |
2.83e-66 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90 | p@chr5:149250331..149250335, - |
2.83e-66 | FFCP PHASE1:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90 | p@chr11:639444..639447, + |
2.83e-66 | FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_5e143518337d08e804fb801ff158fe90 | p@chr2:165170873..165170919, - |
2.83e-66 | FFCP PHASE1:Hg19::chr12:208274..208283,+#_5e143518337d08e804fb801ff158fe90 | p@chr12:208274..208283, + |
2.83e-66 | FFCP PHASE2:Hg19::chr11:639444..639447,+#_5e143518337d08e804fb801ff158fe90 | p@chr11:639444..639447, + |
2.83e-66 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_5e143518337d08e804fb801ff158fe90 | p@chr5:149250331..149250335, - |
4.34e-66 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49 | p@chr3:69928426..69928436, + |
4.34e-66 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_f6b6f99a624c6ba0ccad5eb8e689cd49 | p@chr3:69928426..69928436, + |
5.13e-66 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390 | p@chr1:43533230..43533270, + |
5.13e-66 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_5d7dc3478c4aaaead07e514103cb2390 | +, p@chr1:43533230..43533270 |
1.01e-59 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797 | p@chr9:140088882..140088898, - |
1.01e-59 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_1edd7d200744b265c16395f483db8797 | p@chr9:140088882..140088898, - |
1.82e-59 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599f | p5@MFRP, p6@C1QTNF5 |
1.82e-59 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599f | p@chr16:84228961..84228982, + |
1.82e-59 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_d24a7edc594bf63de026cca785d5599f | p5@MFRP, p6@C1QTNF5 |
1.82e-59 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_d24a7edc594bf63de026cca785d5599f | p@chr16:84228961..84228982, + |
6.44e-59 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36df | p5@CLIC6 |
6.44e-59 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_c85daadb8ff104d51f0989a5548d36df | p5@CLIC6 |
1.58e-53 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573 | p@chr13:99135278..99135298, - |
1.58e-53 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_19eb2c2291595ad86dca8d0412d96573 | p@chr13:99135278..99135298, - |
9.03e-53 | FFCP PHASE1:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54f | p4@TMCC2 |
9.03e-53 | FFCP PHASE2:Hg19::chr1:205226309..205226329,+#_eaee61f99349da4dc8017d0c5295a54f | p4@TMCC2 |
3.84e-50 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cd | p@chr17:932596..932605, - |
3.84e-50 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_3007b4edd6cf8dbc1e7e11fdd0ed74cd | p@chr17:932596..932605, - |
5.37e-50 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028 | p1@SLC16A8 |
5.37e-50 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_6d23fd53a803b4773c409bd7ad83f028 | p1@SLC16A8 |
8.88e-50 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8 | p@chr2:235591306..235591328, + |
8.88e-50 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_27996b8a03bd8d8458e8eb276a6807d8 | p@chr2:235591306..235591328, + |
1.05e-49 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086b | p@chr3:183733654..183733680, - |
1.05e-49 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_4e6e84acc598f53e17f59dc673ec086b | p@chr3:183733654..183733680, - |
1.05e-49 | FFCP PHASE2:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086b | p1@DIAPH2-AS1 |
1.05e-49 | FFCP PHASE1:Hg19::chrX:96819517..96819540,-#_4e6e84acc598f53e17f59dc673ec086b | p1@DIAPH2-AS1 |
1.24e-49 | FFCP PHASE2:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606c | p@chr16:89441550..89441568, - |
1.24e-49 | FFCP PHASE1:Hg19::chr16:89441550..89441568,-#_3bb74a9650b7e3ff2920f77ee9e2606c | p@chr16:89441550..89441568, - |
1.73e-49 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328 | p@chr3:98672197..98672201, + |
1.73e-49 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d78ecb33e00c153ff30db7d031fdf328 | p@chr3:98672197..98672201, + |
5.28e-49 | FFCP PHASE1:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3f | p4@OTX2 |
5.28e-49 | FFCP PHASE2:Hg19::chr14:57277163..57277168,-#_80126e6745965d48daf13cfbfaa0ab3f | p4@OTX2 |
9.58e-49 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2 | p@chr14:87636652..87636657, - |
9.58e-49 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_03bc21c1302a0211c94164da72a6d0b2 | p@chr14:87636652..87636657, - |
1.38e-48 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2 | p@chr3:69928371..69928385, + |
1.38e-48 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_4f43062cb330d91205bff7520926b6e2 | p@chr3:69928371..69928385, + |
2.88e-48 | FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61c | p13@NAV3 |
2.88e-48 | FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_1e3d42d040a935c80bab9d8ee78fa61c | p13@NAV3 |
3.25e-48 | FFCP PHASE1:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621 | p1@SLC1A7 |
3.25e-48 | FFCP PHASE2:Hg19::chr1:53608289..53608315,-#_04c19f32c0ea0fb995c840243ffd0621 | p1@SLC1A7 |
6.65e-45 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004 | p3@CLIC6 |
6.65e-45 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_68ba76455c0774480442df5618717004 | p3@CLIC6 |
9.76e-45 | FFCP PHASE1:Hg19::chr5:82640256..82640260,+#_b9c6a089e1fe6b5c7a48fb230064ad86 | p@chr5:82640256..82640260, + |
9.76e-45 | FFCP PHASE2:Hg19::chr21:16031159..16031171,-#_b9c6a089e1fe6b5c7a48fb230064ad86 | p3@LOC388813 |
9.76e-45 | FFCP PHASE1:Hg19::chr21:16031159..16031171,-#_b9c6a089e1fe6b5c7a48fb230064ad86 | p3@LOC388813 |
9.76e-45 | FFCP PHASE2:Hg19::chr2:219610770..219610777,+#_b9c6a089e1fe6b5c7a48fb230064ad86 | p19@TTLL4 |
9.76e-45 | FFCP PHASE1:Hg19::chr7:129028525..129028531,+#_b9c6a089e1fe6b5c7a48fb230064ad86 | p32@AHCYL2 |
9.76e-45 | FFCP PHASE2:Hg19::chr9:111764519..111764525,-#_b9c6a089e1fe6b5c7a48fb230064ad86 | p@chr9:111764519..111764525, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.