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UBERON:0001846

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Name:internal ear
Namespace:FANTOM
Definition:"Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
Xrefs:
links:

AAO:0000238
BTO:0000630
EFO:0001363
EHDAA2:0000831
EHDAA:504
EMAPA:16194
EV:0100361
FMA:60909
GAID:871
galen:InnerEar
[ 200px-Gray923.png 200px-Gray923.png]
MA:0000237
MAT:0000145
MESH:A.09.246.631
MIAA:0000145
ncithesaurus:Internal_Ear
NIF_GrossAnatomy:birnlex_1196
OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
SCTID:181189006
TAO:0000217
VHOG:0000284
XAO:0000192

ZFA:0000217
Synonyms: "auris interna" RELATED [BTO:0000630]
"inner ear" EXACT []
"labyrinth" RELATED []
"otocyst" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003051(ear vesicle)
part_of:UBERON:0001690(ear)



Children

derives from:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample)
part of:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_290235bc8c76f63330a2b730572b2dadp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_290235bc8c76f63330a2b730572b2dadp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_290235bc8c76f63330a2b730572b2dadp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_290235bc8c76f63330a2b730572b2dadp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_290235bc8c76f63330a2b730572b2dadp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_290235bc8c76f63330a2b730572b2dadp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_290235bc8c76f63330a2b730572b2dadp15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_290235bc8c76f63330a2b730572b2dadp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_290235bc8c76f63330a2b730572b2dadp2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_290235bc8c76f63330a2b730572b2dadp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_290235bc8c76f63330a2b730572b2dadp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_290235bc8c76f63330a2b730572b2dadp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_290235bc8c76f63330a2b730572b2dadp5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_290235bc8c76f63330a2b730572b2dadp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_290235bc8c76f63330a2b730572b2dadp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_290235bc8c76f63330a2b730572b2dadp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_290235bc8c76f63330a2b730572b2dadp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_290235bc8c76f63330a2b730572b2dadp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_290235bc8c76f63330a2b730572b2dadp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_290235bc8c76f63330a2b730572b2dadp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_290235bc8c76f63330a2b730572b2dadp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_290235bc8c76f63330a2b730572b2dadp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_290235bc8c76f63330a2b730572b2dadp4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_290235bc8c76f63330a2b730572b2dadp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_290235bc8c76f63330a2b730572b2dadp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_290235bc8c76f63330a2b730572b2dadp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_290235bc8c76f63330a2b730572b2dadp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_290235bc8c76f63330a2b730572b2dadp18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_290235bc8c76f63330a2b730572b2dadp4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_290235bc8c76f63330a2b730572b2dadp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_290235bc8c76f63330a2b730572b2dadp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_290235bc8c76f63330a2b730572b2dadp1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_290235bc8c76f63330a2b730572b2dadp2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_290235bc8c76f63330a2b730572b2dadp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_290235bc8c76f63330a2b730572b2dadp7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_290235bc8c76f63330a2b730572b2dadp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_290235bc8c76f63330a2b730572b2dadp5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_290235bc8c76f63330a2b730572b2dadp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_290235bc8c76f63330a2b730572b2dadp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_290235bc8c76f63330a2b730572b2dadp3@Strc
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_290235bc8c76f63330a2b730572b2dadp3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_290235bc8c76f63330a2b730572b2dadp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_290235bc8c76f63330a2b730572b2dadp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_290235bc8c76f63330a2b730572b2dadp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_290235bc8c76f63330a2b730572b2dadp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_290235bc8c76f63330a2b730572b2dadp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_290235bc8c76f63330a2b730572b2dadp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_290235bc8c76f63330a2b730572b2dadp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_290235bc8c76f63330a2b730572b2dadp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_290235bc8c76f63330a2b730572b2dadp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_290235bc8c76f63330a2b730572b2dadp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_290235bc8c76f63330a2b730572b2dadp2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_290235bc8c76f63330a2b730572b2dadp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_290235bc8c76f63330a2b730572b2dadp2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_290235bc8c76f63330a2b730572b2dadp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_290235bc8c76f63330a2b730572b2dadp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_290235bc8c76f63330a2b730572b2dadp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_290235bc8c76f63330a2b730572b2dadp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_290235bc8c76f63330a2b730572b2dadp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_290235bc8c76f63330a2b730572b2dadp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_290235bc8c76f63330a2b730572b2dadp2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_290235bc8c76f63330a2b730572b2dadp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_290235bc8c76f63330a2b730572b2dadp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_290235bc8c76f63330a2b730572b2dadp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_290235bc8c76f63330a2b730572b2dadp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_290235bc8c76f63330a2b730572b2dadp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_290235bc8c76f63330a2b730572b2dadp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_290235bc8c76f63330a2b730572b2dadp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_290235bc8c76f63330a2b730572b2dadp1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_290235bc8c76f63330a2b730572b2dadp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_290235bc8c76f63330a2b730572b2dadp6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_290235bc8c76f63330a2b730572b2dadp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_290235bc8c76f63330a2b730572b2dadp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_290235bc8c76f63330a2b730572b2dadp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_290235bc8c76f63330a2b730572b2dadp@chr3:31585340..31585360, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp3.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001846&oldid=3277301"