UBERON:0001828
From FANTOM5_SSTAR
Name: | gingiva | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva] | ||
Xrefs: |
| ||
Synonyms: |
"gum" EXACT [FMA:59762] "gum tissue" EXACT [UBERON:cjm] | ||
Comments: | AO notes: FMA has gingiva of upper and lower jaw | ||
Alt_id: | UBERON:FMA_59762-MA_0000342 | ||
Subset: | uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0003729(mouth mucosa) |
---|---|
part_of: | UBERON:0003729(mouth mucosa),UBERON:0011595(jaw region) |
Children
part of: | UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11222-116B7 (Fibroblast - Gingival, donor4 (GFH2))
- 11237-116D4 (Fibroblast - Gingival, donor1)
- 11302-117B6 (Gingival epithelial cells, donor2 (GEA14))
- 11303-117B7 (Fibroblast - Gingival, donor5 (GFH3))
- 11318-117D4 (Fibroblast - Gingival, donor2)
- 11379-118B2 (Gingival epithelial cells, donor3 (GEA15))
- 11394-118C8 (Fibroblast - Gingival, donor3)
- 11921-125H4 (Fibroblast - Gingival, donor6 (aggressive periodontitis))
- 11922-125H5 (Fibroblast - Gingival, donor6 (control))
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
3.28e-61 | FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1 | p@chr1:75599672..75599682, - |
3.28e-61 | FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1 | p@chr1:75599672..75599682, - |
8.7e-48 | FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462 | p1@ENST00000427892, p1@uc001dgp.1 |
8.7e-48 | FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462 | p1@ENST00000427892, p1@uc001dgp.1 |
7.14e-38 | FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96 | p@chr4:143470541..143470551, + |
7.14e-38 | FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96 | p@chr4:143470541..143470551, + |
6.5e-34 | FFCP PHASE2:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4 | p@chr9:94586900..94586909, - |
6.5e-34 | FFCP PHASE1:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4 | p@chr9:94586900..94586909, - |
9.08e-34 | FFCP PHASE1:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p1@CU674593 |
9.08e-34 | FFCP PHASE1:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p@chr1:14465017..14465026, + |
9.08e-34 | FFCP PHASE2:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p1@CU674593 |
9.08e-34 | FFCP PHASE2:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bf | p@chr1:14465017..14465026, + |
1.96e-33 | FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455 | p@chr1:75599683..75599699, - |
1.96e-33 | FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455 | -, p@chr1:75599683..75599699 |
1.15e-32 | FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7 | p3@GSDMC |
1.15e-32 | FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7 | p3@GSDMC |
1.59e-32 | FFCP PHASE2:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77e | p@chr11:93754560..93754567, + |
1.59e-32 | FFCP PHASE1:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77e | p@chr11:93754560..93754567, + |
2.71e-32 | FFCP PHASE2:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9 | p@chr10:105791095..105791110, - |
2.71e-32 | FFCP PHASE1:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9 | p@chr10:105791095..105791110, - |
1.23e-28 | FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842 | p@chr1:153533849..153533860, - |
1.23e-28 | FFCP PHASE1:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842 | p@chr7:40883542..40883550, + |
1.23e-28 | FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842 | p@chr1:153533849..153533860, - |
1.23e-28 | FFCP PHASE2:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842 | p@chr7:40883542..40883550, + |
1.64e-28 | FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034c | p@chr3:190252374..190252383, - |
1.64e-28 | FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034c | p@chr3:190252374..190252383, - |
2.17e-28 | FFCP PHASE1:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165 | p@chr21:44957893..44957903, - |
2.17e-28 | FFCP PHASE2:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165 | p@chr21:44957893..44957903, - |
2.38e-28 | FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193a | p@chr1:241577071..241577081, + |
2.38e-28 | FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193a | p@chr1:241577071..241577081, + |
2.87e-28 | FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3f | p@chr10:106205489..106205498, + |
2.87e-28 | FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3f | p@chr10:106205489..106205498, + |
3.05e-27 | FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328 | p@chr2:172953513..172953549, - |
3.05e-27 | FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328 | p@chr2:172953513..172953549, - |
3.26e-27 | FFCP PHASE2:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3b | p5@SF3B3 |
3.26e-27 | FFCP PHASE1:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3b | p5@SF3B3 |
1.11e-25 | FFCP PHASE2:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34 | p15@PAK6 |
1.11e-25 | FFCP PHASE2:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34 | p5@SLC6A15 |
1.11e-25 | FFCP PHASE1:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34 | p15@PAK6 |
1.11e-25 | FFCP PHASE1:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34 | p5@SLC6A15 |
1.43e-25 | FFCP PHASE1:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18 | p1@uc004bcw.2 |
1.43e-25 | FFCP PHASE2:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18 | p1@uc004bcw.2 |
2.37e-25 | FFCP PHASE1:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0e | p@chr16:82671490..82671521, + |
2.37e-25 | FFCP PHASE2:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0e | p@chr16:82671490..82671521, + |
2.8e-25 | FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080 | p4@LHX8 |
2.8e-25 | FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080 | p4@LHX8 |
1.15e-24 | FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbd | p2@LHX8 |
1.15e-24 | FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbd | p2@LHX8 |
7.04e-24 | FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cf | p@chr1:83982415..83982420, + |
7.04e-24 | FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cf | p@chr1:83982415..83982420, + |
9.45e-24 | FFCP PHASE1:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91 | p@chr6:1389690..1389700, - |
9.45e-24 | FFCP PHASE2:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91 | p@chr6:1389690..1389700, - |
5.97e-23 | FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfc | p18@SH3D19 |
5.97e-23 | FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfc | p18@SH3D19 |
6.43e-23 | FFCP PHASE2:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cb | p2@RASSF10 |
6.43e-23 | FFCP PHASE1:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cb | p2@RASSF10 |
7.47e-23 | FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4 | p@chr18:20493879..20493891, + |
7.47e-23 | FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4 | p@chr18:20493879..20493891, + |
8.67e-23 | FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfb | p@chr8:124850358..124850380, + |
8.67e-23 | FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfb | p@chr8:124850358..124850380, + |
1.34e-22 | FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8e | p1@LHX8 |
1.34e-22 | FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8e | p1@LHX8 |
1.83e-21 | FFCP PHASE2:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340 | p21@SASH1 |
1.83e-21 | FFCP PHASE1:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340 | p21@SASH1 |
4.5e-21 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8d | p@chr13:30259768..30259777, + |
4.5e-21 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8d | p@chr13:30259768..30259777, + |
5.91e-21 | FFCP PHASE1:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bcca | p@chr5:167247119..167247129, + |
5.91e-21 | FFCP PHASE2:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bcca | p@chr5:167247119..167247129, + |
6.32e-21 | FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbf | p@chr5:52619638..52619641, + |
6.32e-21 | FFCP PHASE1:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbf | p@chr13:75017232..75017235, + |
6.32e-21 | FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbf | p@chr5:52619638..52619641, + |
6.32e-21 | FFCP PHASE2:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbf | p@chr13:75017232..75017235, + |
7.35e-21 | FFCP PHASE1:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06ad | p@chr18:46607960..46607989, - |
7.35e-21 | FFCP PHASE2:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06ad | p@chr18:46607960..46607989, - |
8.88e-21 | FFCP PHASE2:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695da | p@chr11:129511955..129511961, - |
8.88e-21 | FFCP PHASE1:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695da | p@chr11:129511955..129511961, - |
8.98e-21 | FFCP PHASE2:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0 | p@chr3:52440350..52440361, - |
8.98e-21 | FFCP PHASE1:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0 | p@chr3:52440350..52440361, - |
8.98e-21 | FFCP PHASE1:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0 | p@chr1:183213228..183213235, + |
8.98e-21 | FFCP PHASE2:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0 | p@chr1:183213228..183213235, + |
9.92e-21 | FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05 | p@chr12:115777087..115777091, + |
9.92e-21 | FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05 | p4@ENST00000473110 |
9.92e-21 | FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05 | p4@ENST00000473110 |
9.92e-21 | FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05 | +, p@chr12:115777087..115777091 |
1.1e-20 | FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4 | p@chr10:5567644..5567657, + |
1.1e-20 | FFCP PHASE1:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4 | p4@GSDMC |
1.1e-20 | FFCP PHASE2:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4 | p4@GSDMC |
1.1e-20 | FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4 | p@chr10:5567644..5567657, + |
1.21e-20 | FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363 | p@chr10:106205503..106205518, + |
1.21e-20 | FFCP PHASE2:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363 | p22@ITGB4 |
1.21e-20 | FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363 | p@chr10:106205503..106205518, + |
1.21e-20 | FFCP PHASE1:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363 | p22@ITGB4 |
3.09e-19 | FFCP PHASE1:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7 | p@chr19:10665857..10665900, - |
3.09e-19 | FFCP PHASE2:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7 | p@chr19:10665857..10665900, - |
3.29e-19 | FFCP PHASE2:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6 | p13@PKP3 |
3.29e-19 | FFCP PHASE1:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6 | p13@PKP3 |
3.73e-19 | FFCP PHASE1:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7 | p29@LPAR1 |
3.73e-19 | FFCP PHASE2:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7 | p29@LPAR1 |
4.43e-18 | FFCP PHASE2:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80 | p11@SH3D19 |
4.43e-18 | FFCP PHASE1:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80 | p11@SH3D19 |