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UBERON:0001828

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Name:gingiva
Namespace:FANTOM
Definition:"The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
Xrefs:
links:

BTO:0000519
EFO:0001925
EMAPA:18967
EMAPA:18970
EV:0100064
FMA:59762
GAID:1257
galen:Gingiva
[1]
[ 200px-Tooth_Section.svg.png 200px-Tooth_Section.svg.png]
MA:0000342
MESH:A.14.254.646.480
ncithesaurus:Gingiva
OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
SCTID:181224006

VHOG:0001269
Synonyms: "gum" EXACT [FMA:59762]
"gum tissue" EXACT [UBERON:cjm]
Comments:AO notes: FMA has gingiva of upper and lower jaw
Alt_id: UBERON:FMA_59762-MA_0000342
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0003729(mouth mucosa)
part_of:UBERON:0003729(mouth mucosa),UBERON:0011595(jaw region)



Children

part of:UBERON:0001949 (gingival epithelium),CL:0002552 (fibroblast of gingiva)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001828 (gingiva), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
3.28e-61FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1p@chr1:75599672..75599682, -
3.28e-61FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_e06bc67a40ec204c5458e64492b999d1p@chr1:75599672..75599682, -
8.7e-48FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462p1@ENST00000427892, p1@uc001dgp.1
8.7e-48FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_0b7f4b2971dd97c6e3c77f7f042c8462p1@ENST00000427892, p1@uc001dgp.1
7.14e-38FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96p@chr4:143470541..143470551, +
7.14e-38FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_f307e5c2072492201af92f3fdaa54f96p@chr4:143470541..143470551, +
6.5e-34FFCP PHASE2:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4p@chr9:94586900..94586909, -
6.5e-34FFCP PHASE1:Hg19::chr9:94586900..94586909,-#_de15a3ef955487953463da4176c62bd4p@chr9:94586900..94586909, -
9.08e-34FFCP PHASE1:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp1@CU674593
9.08e-34FFCP PHASE1:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp@chr1:14465017..14465026, +
9.08e-34FFCP PHASE2:Hg19::chr17:73753856..73753871,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp1@CU674593
9.08e-34FFCP PHASE2:Hg19::chr1:14465017..14465026,+#_4f0baad1058ec75f79c6c9ccdf1d89bfp@chr1:14465017..14465026, +
1.96e-33FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455p@chr1:75599683..75599699, -
1.96e-33FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_d0d8847cfb941cc4f93734b95443a455-, p@chr1:75599683..75599699
1.15e-32FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7p3@GSDMC
1.15e-32FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_68f216d1b529fa006023b5856df72df7p3@GSDMC
1.59e-32FFCP PHASE2:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77ep@chr11:93754560..93754567, +
1.59e-32FFCP PHASE1:Hg19::chr11:93754560..93754567,+#_afadfd0d03fef26a3a655463903aa77ep@chr11:93754560..93754567, +
2.71e-32FFCP PHASE2:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9p@chr10:105791095..105791110, -
2.71e-32FFCP PHASE1:Hg19::chr10:105791095..105791110,-#_cab5e1fec48c681e0803fbcfb57f55d9p@chr10:105791095..105791110, -
1.23e-28FFCP PHASE2:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842p@chr1:153533849..153533860, -
1.23e-28FFCP PHASE1:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842p@chr7:40883542..40883550, +
1.23e-28FFCP PHASE1:Hg19::chr1:153533849..153533860,-#_64e88ea840e213908b571db1efce1842p@chr1:153533849..153533860, -
1.23e-28FFCP PHASE2:Hg19::chr7:40883542..40883550,+#_64e88ea840e213908b571db1efce1842p@chr7:40883542..40883550, +
1.64e-28FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034cp@chr3:190252374..190252383, -
1.64e-28FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_d2220503c4d981152ee890967c6a034cp@chr3:190252374..190252383, -
2.17e-28FFCP PHASE1:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165p@chr21:44957893..44957903, -
2.17e-28FFCP PHASE2:Hg19::chr21:44957893..44957903,-#_45514f141087032bc45004442f94e165p@chr21:44957893..44957903, -
2.38e-28FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193ap@chr1:241577071..241577081, +
2.38e-28FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_3df02c2a499e90557a793df990a9193ap@chr1:241577071..241577081, +
2.87e-28FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3fp@chr10:106205489..106205498, +
2.87e-28FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_af36ac922c644c72fff756dcbabfdc3fp@chr10:106205489..106205498, +
3.05e-27FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328p@chr2:172953513..172953549, -
3.05e-27FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_f945c4b1103da77989f72400420bc328p@chr2:172953513..172953549, -
3.26e-27FFCP PHASE2:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3bp5@SF3B3
3.26e-27FFCP PHASE1:Hg19::chr16:70597904..70597915,+#_f449b466d4ad06cbbac000c973bb7f3bp5@SF3B3
1.11e-25FFCP PHASE2:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34p15@PAK6
1.11e-25FFCP PHASE2:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34p5@SLC6A15
1.11e-25FFCP PHASE1:Hg19::chr15:40531729..40531738,+#_b34b04948c9fbcaeb8086eb3404a9a34p15@PAK6
1.11e-25FFCP PHASE1:Hg19::chr12:85306433..85306434,-#_b34b04948c9fbcaeb8086eb3404a9a34p5@SLC6A15
1.43e-25FFCP PHASE1:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18p1@uc004bcw.2
1.43e-25FFCP PHASE2:Hg19::chr9:108870138..108870152,+#_3a4b07cf199ec2cc1e4983529fcb4d18p1@uc004bcw.2
2.37e-25FFCP PHASE1:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0ep@chr16:82671490..82671521, +
2.37e-25FFCP PHASE2:Hg19::chr16:82671490..82671521,+#_f067dff49403485919210bee44504e0ep@chr16:82671490..82671521, +
2.8e-25FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080p4@LHX8
2.8e-25FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fae9261730ff64db9e1abd3a3da7b080p4@LHX8
1.15e-24FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbdp2@LHX8
1.15e-24FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_77d6f01a794e0b342d726f95679c6cbdp2@LHX8
7.04e-24FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cfp@chr1:83982415..83982420, +
7.04e-24FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_2cc593064411e03927a19398ff4716cfp@chr1:83982415..83982420, +
9.45e-24FFCP PHASE1:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91p@chr6:1389690..1389700, -
9.45e-24FFCP PHASE2:Hg19::chr6:1389690..1389700,-#_72713fb12bf89eee892301521d856a91p@chr6:1389690..1389700, -
5.97e-23FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfcp18@SH3D19
5.97e-23FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_6609885980d35c8162869bd6eea85cfcp18@SH3D19
6.43e-23FFCP PHASE2:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cbp2@RASSF10
6.43e-23FFCP PHASE1:Hg19::chr11:13030878..13030889,+#_9befc5221fbf1e8770b9e099016590cbp2@RASSF10
7.47e-23FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4p@chr18:20493879..20493891, +
7.47e-23FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_39d7cd095aebde5c16884e6b8ec693f4p@chr18:20493879..20493891, +
8.67e-23FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfbp@chr8:124850358..124850380, +
8.67e-23FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_677aa38617cc495bb87cfeda96df3cfbp@chr8:124850358..124850380, +
1.34e-22FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8ep1@LHX8
1.34e-22FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_475dda346052cf0771b6f622714bdd8ep1@LHX8
1.83e-21FFCP PHASE2:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340p21@SASH1
1.83e-21FFCP PHASE1:Hg19::chr6:148761357..148761368,+#_48cfd8f54c76f51d7ef518fa506cb340p21@SASH1
4.5e-21FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8dp@chr13:30259768..30259777, +
4.5e-21FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_a8a6ba8671287ed28e61a40fce7a0c8dp@chr13:30259768..30259777, +
5.91e-21FFCP PHASE1:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bccap@chr5:167247119..167247129, +
5.91e-21FFCP PHASE2:Hg19::chr5:167247119..167247129,+#_977a3051a5db3c2b1a8205113183bccap@chr5:167247119..167247129, +
6.32e-21FFCP PHASE2:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbfp@chr5:52619638..52619641, +
6.32e-21FFCP PHASE1:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbfp@chr13:75017232..75017235, +
6.32e-21FFCP PHASE1:Hg19::chr5:52619638..52619641,+#_080f0b443112f75b26b933729e28ffbfp@chr5:52619638..52619641, +
6.32e-21FFCP PHASE2:Hg19::chr13:75017232..75017235,+#_080f0b443112f75b26b933729e28ffbfp@chr13:75017232..75017235, +
7.35e-21FFCP PHASE1:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06adp@chr18:46607960..46607989, -
7.35e-21FFCP PHASE2:Hg19::chr18:46607960..46607989,-#_74063dfb95883b65967c4761eaeb06adp@chr18:46607960..46607989, -
8.88e-21FFCP PHASE2:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695dap@chr11:129511955..129511961, -
8.88e-21FFCP PHASE1:Hg19::chr11:129511955..129511961,-#_bfb3a434bcc1c1fa81215b1d8b2695dap@chr11:129511955..129511961, -
8.98e-21FFCP PHASE2:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0p@chr3:52440350..52440361, -
8.98e-21FFCP PHASE1:Hg19::chr3:52440350..52440361,-#_ca147a560215e88bba59b6bc30b6adc0p@chr3:52440350..52440361, -
8.98e-21FFCP PHASE1:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0p@chr1:183213228..183213235, +
8.98e-21FFCP PHASE2:Hg19::chr1:183213228..183213235,+#_ca147a560215e88bba59b6bc30b6adc0p@chr1:183213228..183213235, +
9.92e-21FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05p@chr12:115777087..115777091, +
9.92e-21FFCP PHASE2:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05p4@ENST00000473110
9.92e-21FFCP PHASE1:Hg19::chr3:170459091..170459101,-#_46567ee4cd2cdad82c24d9702c533c05p4@ENST00000473110
9.92e-21FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_46567ee4cd2cdad82c24d9702c533c05+, p@chr12:115777087..115777091
1.1e-20FFCP PHASE1:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4p@chr10:5567644..5567657, +
1.1e-20FFCP PHASE1:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4p4@GSDMC
1.1e-20FFCP PHASE2:Hg19::chr8:130798565..130798567,-#_1d98a123da077f82ced214b8ea9b08e4p4@GSDMC
1.1e-20FFCP PHASE2:Hg19::chr10:5567644..5567657,+#_1d98a123da077f82ced214b8ea9b08e4p@chr10:5567644..5567657, +
1.21e-20FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363p@chr10:106205503..106205518, +
1.21e-20FFCP PHASE2:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363p22@ITGB4
1.21e-20FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_91591066f78519dee260888447087363p@chr10:106205503..106205518, +
1.21e-20FFCP PHASE1:Hg19::chr17:73720330..73720338,+#_91591066f78519dee260888447087363p22@ITGB4
3.09e-19FFCP PHASE1:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7p@chr19:10665857..10665900, -
3.09e-19FFCP PHASE2:Hg19::chr19:10665857..10665900,-#_f2f5d153ce0fcce3c43723a6ed6b3ef7p@chr19:10665857..10665900, -
3.29e-19FFCP PHASE2:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6p13@PKP3
3.29e-19FFCP PHASE1:Hg19::chr11:392625..392628,+#_8a2503314c2f00640f9068b61b9f2ca6p13@PKP3
3.73e-19FFCP PHASE1:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7p29@LPAR1
3.73e-19FFCP PHASE2:Hg19::chr9:113801625..113801636,-#_2ac93fb0ba9e01edd296261364b4f3a7p29@LPAR1
4.43e-18FFCP PHASE2:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80p11@SH3D19
4.43e-18FFCP PHASE1:Hg19::chr4:152086844..152086857,-#_45bb3cf2a3049634655515f71d52ca80p11@SH3D19

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