Personal tools

UBERON:0010359

From FANTOM5_SSTAR

Jump to: navigation, search

Name:pharyngeal arch mesenchyme from neural crest
Namespace:FANTOM
Comments:Partially implements UBERONREF:0000002 NC meeting scheme

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0014387(mesenchyme derived from neural crest)
develops_from:UBERON:0002342(neural crest)
part_of:UBERON:0010046(entire pharyngeal arch associated mesenchyme)



Children

is a:UBERON:0010259 (1st arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010359 (pharyngeal arch mesenchyme from neural crest), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_5229b2548a1ef10bfa83466212b3d17ep14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_5229b2548a1ef10bfa83466212b3d17ep14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_64c5d793ba2a39c36fd0dab1164eb368p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_64c5d793ba2a39c36fd0dab1164eb368p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_64c5d793ba2a39c36fd0dab1164eb368p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_64c5d793ba2a39c36fd0dab1164eb368p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_64c5d793ba2a39c36fd0dab1164eb368p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_64c5d793ba2a39c36fd0dab1164eb368p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_64c5d793ba2a39c36fd0dab1164eb368p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_64c5d793ba2a39c36fd0dab1164eb368p13@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_c1763e31642d00d431883dd097348763p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_c1763e31642d00d431883dd097348763p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_c1763e31642d00d431883dd097348763p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_c1763e31642d00d431883dd097348763p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_2f7e313c01840b2f4b8107264d61ba0dp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_2f7e313c01840b2f4b8107264d61ba0dp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_cac2d57d7484e62e06767b93c101b3fdp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_cac2d57d7484e62e06767b93c101b3fdp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_cac2d57d7484e62e06767b93c101b3fdp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_cac2d57d7484e62e06767b93c101b3fdp9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_cac2d57d7484e62e06767b93c101b3fdp17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_cac2d57d7484e62e06767b93c101b3fd+, p@chr8:57354278..57354286
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_9a00300ea9e2e0c455bbd8f82aff9b56p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_9a00300ea9e2e0c455bbd8f82aff9b56p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_cbf17f5bdf5115eb05ac38d87a024efdp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_cbf17f5bdf5115eb05ac38d87a024efdp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_cbf17f5bdf5115eb05ac38d87a024efdp7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_cbf17f5bdf5115eb05ac38d87a024efdp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_cbf17f5bdf5115eb05ac38d87a024efdp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_cbf17f5bdf5115eb05ac38d87a024efdp@chr5:75913767..75913778, -
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_212b0282c64f9022aa27bef333539601p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_212b0282c64f9022aa27bef333539601p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_212b0282c64f9022aa27bef333539601p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_212b0282c64f9022aa27bef333539601p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_3a0de850a933738d84f153e54fb26d67p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_3a0de850a933738d84f153e54fb26d67p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_3a0de850a933738d84f153e54fb26d67-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_3a0de850a933738d84f153e54fb26d67p@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_aad05e3dc4ae5af5d30c85167cd819b9p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_aad05e3dc4ae5af5d30c85167cd819b9p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_aad05e3dc4ae5af5d30c85167cd819b9p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_aad05e3dc4ae5af5d30c85167cd819b9p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_aad05e3dc4ae5af5d30c85167cd819b9p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_aad05e3dc4ae5af5d30c85167cd819b9p8@LHX8
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_2457e99c137acb2994afc425eec10654p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_2457e99c137acb2994afc425eec10654p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_2457e99c137acb2994afc425eec10654p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_2457e99c137acb2994afc425eec10654p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_36b21cf007f092be76db258a1212f06ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_36b21cf007f092be76db258a1212f06ap@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_36b21cf007f092be76db258a1212f06ap@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_36b21cf007f092be76db258a1212f06ap@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_a41273d7148f418f746aa603d1e7952cp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_a41273d7148f418f746aa603d1e7952cp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_a41273d7148f418f746aa603d1e7952cp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_a41273d7148f418f746aa603d1e7952cp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_a41273d7148f418f746aa603d1e7952cp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_a41273d7148f418f746aa603d1e7952cp5@PENK
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_df9a5cc24d7e29c51ef8b49f7a896df3p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_df9a5cc24d7e29c51ef8b49f7a896df3p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_6a073dfbcf9d594c3c4272dc01a2f62fp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_6a073dfbcf9d594c3c4272dc01a2f62fp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_4d99bcfe1a2d9a2052111a6c61fb0b80-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_4d99bcfe1a2d9a2052111a6c61fb0b80p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_634c2e344b012e7defb13ed759e54a14p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_634c2e344b012e7defb13ed759e54a14p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_634c2e344b012e7defb13ed759e54a14p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_634c2e344b012e7defb13ed759e54a14p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_634c2e344b012e7defb13ed759e54a14p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_634c2e344b012e7defb13ed759e54a14-, p@chr5:19721484..19721507
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_7b5a21cb970af421c857d98607a57dd9p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_7b5a21cb970af421c857d98607a57dd9+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7b5a21cb970af421c857d98607a57dd9-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7b5a21cb970af421c857d98607a57dd9p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_d4e3fab8a5b564837c096da968d7d5cbp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_d4e3fab8a5b564837c096da968d7d5cbp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_d4e3fab8a5b564837c096da968d7d5cbp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_d4e3fab8a5b564837c096da968d7d5cbp10@ITGA8
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_073b199083361d3b6481421ec51ec226p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_073b199083361d3b6481421ec51ec226p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_073b199083361d3b6481421ec51ec226p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_073b199083361d3b6481421ec51ec226p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_073b199083361d3b6481421ec51ec226p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_073b199083361d3b6481421ec51ec226p@chr17:79071218..79071221, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_943cadccb61e314a691abe84567c3793p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_943cadccb61e314a691abe84567c3793p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_55521dbd832614524899be834613990fp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_55521dbd832614524899be834613990f-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_55521dbd832614524899be834613990fp18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_55521dbd832614524899be834613990fp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_55521dbd832614524899be834613990fp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_55521dbd832614524899be834613990fp18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr4:151503350..151503358,+#_d3d743ac5dcff89455207629a0380996p11@MAB21L2
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_d3d743ac5dcff89455207629a0380996p11@MAB21L2

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0010359&oldid=3278023"