Personal tools

MCL coexpression mm9:717

From FANTOM5_SSTAR

Jump to: navigation, search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.


Phase1 CAGE Peaks

 Short description
Mm9::chr11:98216636..98216644,+p@chr11:98216636..98216644
+
Mm9::chr11:98216649..98216660,+p@chr11:98216649..98216660
+
Mm9::chr11:98216663..98216676,+p@chr11:98216663..98216676
+
Mm9::chr12:115065398..115065415,-p1@ENSMUST00000103457
Mm9::chr12:116610671..116610699,-p@chr12:116610671..116610699
-
Mm9::chr19:21539679..21539681,-p@chr19:21539679..21539681
-
Mm9::chr2:109740125..109740129,+p@chr2:109740125..109740129
+
Mm9::chr6:78416298..78416310,-p@chr6:78416298..78416310
-
Mm9::chr6:86715419..86715421,-p@chr6:86715419..86715421
-
Mm9::chr7:52930395..52930401,+p@chr7:52930395..52930401
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0048521negative regulation of behavior0.00288529139880586
GO:0007621negative regulation of female receptivity0.00288529139880586
GO:0045924regulation of female receptivity0.00288529139880586
GO:0050795regulation of behavior0.00288529139880586
GO:0060181female receptivity0.00288529139880586
GO:0060180female mating behavior0.00288529139880586
GO:0004865type 1 serine/threonine specific protein phosphatase inhibitor activity0.0049459428233834
GO:0008599protein phosphatase type 1 regulator activity0.00540947675823292
GO:0033057reproductive behavior in a multicellular organism0.00673142443374804
GO:0007617mating behavior0.00778879287196149
GO:0007618mating0.0100952001073442
GO:0019098reproductive behavior0.0100952001073442
GO:0004864protein phosphatase inhibitor activity0.0106492977328508
GO:0019212phosphatase inhibitor activity0.0117417869620879
GO:0051705behavioral interaction between organisms0.0126883264074621
GO:0019888protein phosphatase regulator activity0.0172975207279368
GO:0019208phosphatase regulator activity0.0178048067250189
GO:0007269neurotransmitter secretion0.023657311898322
GO:0019717synaptosome0.023657311898322
GO:0045055regulated secretory pathway0.0266697990915955
GO:0005923tight junction0.0266697990915955
GO:0048609reproductive process in a multicellular organism0.0266697990915955
GO:0032504multicellular organism reproduction0.0266697990915955
GO:0006887exocytosis0.0277553794968213
GO:0003001generation of a signal involved in cell-cell signaling0.0277553794968213
GO:0043296apical junction complex0.0277553794968213
GO:0001505regulation of neurotransmitter levels0.0277553794968213
GO:0016327apicolateral plasma membrane0.0277553794968213
GO:0045211postsynaptic membrane0.0324387816027939
GO:0044456synapse part0.0347982125106223
GO:0005911intercellular junction0.0417134481758142
GO:0045045secretory pathway0.0471124669310346
GO:0007268synaptic transmission0.0492540285546446
GO:0032940secretion by cell0.0492540285546446
GO:0022414reproductive process0.0492540285546446
GO:0004857enzyme inhibitor activity0.0492540285546446



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0214004
MA0004.10.360508
MA0006.10.210471
MA0007.10.346734
MA0009.10.780842
MA0014.10.0290544
MA0017.12.67453
MA0019.10.603066
MA0024.10.737933
MA0025.11.01089
MA0027.12.42079
MA0028.10.219287
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.10.279998
MA0043.10.875991
MA0046.10.816137
MA0048.10.066679
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.344
MA0056.10
MA0057.10.059732
MA0058.10.273976
MA0059.10.28489
MA0060.10.145297
MA0061.10.16896
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.484739
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.10.745608
MA0074.10.451832
MA0076.10.249619
MA0077.10.762273
MA0078.10.536502
MA0081.10.305576
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.10.34573
MA0089.10
MA0090.10.329158
MA0091.10.372635
MA0092.10.329444
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.292867
MA0103.10.67982
MA0105.10.0911942
MA0106.12.30563
MA0107.10.237082
MA0108.20.625209
MA0109.10
MA0111.10.342068
MA0113.10.516916
MA0114.12.93294
MA0115.13.36914
MA0116.10.210297
MA0117.10.846964
MA0119.10.293392
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.10.470672
MA0139.10.121562
MA0140.10.440804
MA0141.10.259554
MA0142.11.61632
MA0143.11.31882
MA0144.10.169559
MA0145.10.042251
MA0146.10.111454
MA0147.10.179496
MA0148.10.979954
MA0149.10.2978
MA0062.20.0948004
MA0035.20.44524
MA0039.20.000236909
MA0138.20.590987
MA0002.20.781868
MA0137.20.257017
MA0104.20.134457
MA0047.21.24007
MA0112.20.0422488
MA0065.22.50457
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.10.232525
MA0155.10.0498353
MA0156.10.248865
MA0157.10.642984
MA0158.10
MA0159.10.187774
MA0160.10.986076
MA0161.10
MA0162.10.00972009
MA0163.11.31067
MA0164.10.471016
MA0080.20.237846
MA0018.20.480226
MA0099.20.584892
MA0079.25.3413
MA0102.21.49914
MA0258.10.156336
MA0259.10.170828
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:717&oldid=3072716"