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Revision as of 17:18, 15 June 2012

Name:cranium
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BILA:0000115
BTO:0001328
EFO:0000831
EHDAA:6029
EHDAA2:0000325
EMAPA:17680
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008
TAO:0000737
VHOG:0000334
XAO:0003075

ZFA:0000737
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"cranial skeleton" RELATED []
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_c07e35bfbcad3a9ca1580153639f40d6p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_c07e35bfbcad3a9ca1580153639f40d6p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_c07e35bfbcad3a9ca1580153639f40d6p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_c07e35bfbcad3a9ca1580153639f40d6p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_c07e35bfbcad3a9ca1580153639f40d6p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_c07e35bfbcad3a9ca1580153639f40d6p41@Cacnb2
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_c07e35bfbcad3a9ca1580153639f40d6p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_c07e35bfbcad3a9ca1580153639f40d6p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_c07e35bfbcad3a9ca1580153639f40d6p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_c07e35bfbcad3a9ca1580153639f40d6p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_c07e35bfbcad3a9ca1580153639f40d6p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_c07e35bfbcad3a9ca1580153639f40d6p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_c07e35bfbcad3a9ca1580153639f40d6p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_c07e35bfbcad3a9ca1580153639f40d6p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_c07e35bfbcad3a9ca1580153639f40d6p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:20649897..20649907, +

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