UBERON:0001004: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001004
|name=respiratory system
|namespace=
|def="Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_sys...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:10, 15 June 2012
Name: | respiratory system | |
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Definition: | "Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system] | |
Xrefs: |
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Synonyms: |
"apparatus respiratorius" EXACT [] "apparatus respiratorius " RELATED [BTO:0000203] "Atmungssystem" RELATED [BTO:0000203] "respiratory system" EXACT [] | |
Comments: | This class was created automatically from a combination of ontologies | |
Alt_id: | UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272 | |
Subset: |
functional_classification uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000467(anatomical system) |
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disjoint_from: | UBERON:0001007(digestive system),UBERON:0001008(renal system),UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system) |
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part of: | UBERON:0000004 (olfactory apparatus),UBERON:0000065 (respiratory tract),UBERON:0000171 (respiration organ),UBERON:0001005 (respiratory airway),UBERON:0001042 (chordate pharynx),UBERON:0001103 (diaphragm),UBERON:0001825 (paranasal sinus),UBERON:0003469 (respiratory system artery),UBERON:0003504 (respiratory system blood vessel),UBERON:0003643 (respiratory system arterial blood vessel),UBERON:0003831 (respiratory system muscle),UBERON:0004225 (respiratory system smooth muscle),UBERON:0004785 (respiratory system mucosa),UBERON:0004807 (respiratory system epithelium),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0004903 (bronchoalveolar duct junction) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10099-102C9
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10093-102C3 (salivary gland, adult, pool1)
- 10099-102C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001004 (respiratory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data