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MCL coexpression mm9:1433: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!5.72e-12!134;UBERON:0002368!6.94e-09!60;UBERON:0006562!1.31e-08!24;UBERON:0001557!1.31e-08!24;UBERON:0001042!1.31e-08!24;UBERON:0008814!1.31e-08!24;UBERON:0009145!1.31e-08!24;UBERON:0000475!1.63e-08!150;UBERON:0002530!2.56e-08!65;UBERON:0000153!2.81e-08!43;UBERON:0003408!3.10e-08!24;UBERON:0002370!4.14e-08!23;UBERON:0000974!4.14e-08!23;UBERON:0004807!4.14e-08!23;UBERON:0005058!4.14e-08!23;UBERON:0003351!4.14e-08!23;UBERON:0009113!4.14e-08!23;UBERON:0003295!4.14e-08!23;UBERON:0009722!4.14e-08!23;UBERON:0005562!4.14e-08!23;UBERON:0007690!4.14e-08!23;UBERON:0000949!1.09e-07!72;UBERON:0004177!1.20e-07!29;UBERON:0005057!1.20e-07!29;UBERON:0000926!2.01e-07!120;UBERON:0004120!2.01e-07!120;UBERON:0006603!2.01e-07!120;UBERON:0007811!3.41e-07!36
}}
}}

Revision as of 16:53, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:103406461..103406480,+p1@Abtb2
Mm9::chr2:103406499..103406508,+p2@Abtb2
Mm9::chr2:103412278..103412282,+p@chr2:103412278..103412282
+
Mm9::chr2:103415526..103415530,+p@chr2:103415526..103415530
+
Mm9::chr2:103452519..103452523,+p@chr2:103452519..103452523
+
Mm9::chr7:134475868..134475876,+p@chr7:134475868..134475876
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium5.72e-12134
endocrine gland6.94e-0960
pharynx1.31e-0824
upper respiratory tract1.31e-0824
chordate pharynx1.31e-0824
pharyngeal arch system1.31e-0824
pharyngeal region of foregut1.31e-0824
organism subdivision1.63e-08150
gland2.56e-0865
anterior region of body2.81e-0843
gland of gut3.10e-0824
thymus4.14e-0823
neck4.14e-0823
respiratory system epithelium4.14e-0823
hemolymphoid system gland4.14e-0823
pharyngeal epithelium4.14e-0823
thymic region4.14e-0823
pharyngeal gland4.14e-0823
entire pharyngeal arch endoderm4.14e-0823
thymus primordium4.14e-0823
early pharyngeal endoderm4.14e-0823
endocrine system1.09e-0772
hemopoietic organ1.20e-0729
immune organ1.20e-0729
mesoderm2.01e-07120
mesoderm-derived structure2.01e-07120
presumptive mesoderm2.01e-07120
craniocervical region3.41e-0736


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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