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MCL coexpression mm9:2604: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!5.33e-11!64;UBERON:0003075!5.33e-11!64;UBERON:0007284!5.33e-11!64;UBERON:0003056!3.56e-10!49;UBERON:0000970!2.63e-09!9;UBERON:0000019!2.63e-09!9;UBERON:0000047!2.63e-09!9;UBERON:0010312!2.63e-09!9;UBERON:0004088!2.63e-09!9;UBERON:0002104!2.63e-09!9;UBERON:0001456!2.63e-09!9;UBERON:0003072!2.63e-09!9;UBERON:0004128!2.63e-09!9;UBERON:0003071!2.63e-09!9;UBERON:0010371!1.34e-08!73;UBERON:0000020!3.24e-08!12;UBERON:0001032!3.24e-08!12;UBERON:0004456!3.24e-08!12;UBERON:0001444!3.62e-08!11;UBERON:0000991!7.44e-08!18;UBERON:0005564!7.44e-08!18;UBERON:0005156!8.01e-08!26;UBERON:0000990!8.01e-08!26;UBERON:0003133!1.41e-07!24;UBERON:0001894!2.53e-07!10;UBERON:0006222!2.53e-07!10;UBERON:0000033!2.64e-07!13;UBERON:0000073!3.95e-07!54;UBERON:0004176!4.29e-07!17;UBERON:0009196!4.29e-07!17;UBERON:0009117!4.29e-07!17
}}
}}

Revision as of 18:44, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:91540806..91540811,-p@chr10:91540806..91540811
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Mm9::chr10:91579243..91579248,-p@chr10:91579243..91579248
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Mm9::chr10:91627876..91627901,-p1@ENSMUST00000133537


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neurectoderm5.33e-1164
neural plate5.33e-1164
presumptive neural plate5.33e-1164
pre-chordal neural plate3.56e-1049
eye2.63e-099
camera-type eye2.63e-099
simple eye2.63e-099
immature eye2.63e-099
ocular region2.63e-099
visual system2.63e-099
face2.63e-099
optic cup2.63e-099
optic vesicle2.63e-099
eye primordium2.63e-099
ecto-epithelium1.34e-0873
sense organ3.24e-0812
sensory system3.24e-0812
entire sense organ system3.24e-0812
subdivision of head3.62e-0811
gonad7.44e-0818
gonad primordium7.44e-0818
reproductive structure8.01e-0826
reproductive system8.01e-0826
reproductive organ1.41e-0724
diencephalon2.53e-0710
future diencephalon2.53e-0710
head2.64e-0713
regional part of nervous system3.95e-0754
external genitalia4.29e-0717
indifferent external genitalia4.29e-0717
indifferent gonad4.29e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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