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MCL coexpression mm9:3130: Difference between revisions

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|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!8.64e-18!118;UBERON:0000925!8.64e-18!118;UBERON:0006595!8.64e-18!118;UBERON:0001007!5.70e-17!116;UBERON:0001555!5.70e-17!116;UBERON:0007026!5.70e-17!116;UBERON:0000160!3.27e-16!31;UBERON:0004921!7.27e-16!114;UBERON:0005409!5.64e-15!47;UBERON:0009854!3.03e-09!23;UBERON:0009856!3.03e-09!23;UBERON:0000344!3.99e-09!15;UBERON:0003929!1.05e-08!55;UBERON:0002107!1.37e-08!22;UBERON:0007499!1.37e-08!22;UBERON:0006925!1.37e-08!22;UBERON:0009497!1.37e-08!22;UBERON:0000015!1.37e-08!22;UBERON:0002423!1.37e-08!22;UBERON:0006235!1.37e-08!22;UBERON:0008835!1.37e-08!22;UBERON:0003894!1.37e-08!22;UBERON:0004161!1.37e-08!22;UBERON:0008836!1.37e-08!22;UBERON:0003914!3.46e-08!47;UBERON:0002365!4.77e-08!25;UBERON:0002330!4.77e-08!25;UBERON:0001242!6.01e-08!13;UBERON:0000060!6.01e-08!13;UBERON:0001262!6.01e-08!13;UBERON:0004786!6.01e-08!13;UBERON:0000949!7.07e-07!72
}}
}}

Revision as of 19:34, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:20218093..20218114,-p5@Dsc2
Mm9::chr18:20218119..20218142,-p4@Dsc2
Mm9::chr18:20218149..20218161,-p7@Dsc2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure8.64e-18118
endoderm8.64e-18118
presumptive endoderm8.64e-18118
digestive system5.70e-17116
digestive tract5.70e-17116
primitive gut5.70e-17116
intestine3.27e-1631
subdivision of digestive tract7.27e-16114
gastrointestinal system5.64e-1547
digestive tract diverticulum3.03e-0923
sac3.03e-0923
mucosa3.99e-0915
gut epithelium1.05e-0855
liver1.37e-0822
epithelial sac1.37e-0822
digestive gland1.37e-0822
epithelium of foregut-midgut junction1.37e-0822
anatomical boundary1.37e-0822
hepatobiliary system1.37e-0822
foregut-midgut junction1.37e-0822
hepatic diverticulum1.37e-0822
liver primordium1.37e-0822
septum transversum1.37e-0822
liver bud1.37e-0822
epithelial tube3.46e-0847
exocrine gland4.77e-0825
exocrine system4.77e-0825
intestinal mucosa6.01e-0813
anatomical wall6.01e-0813
wall of intestine6.01e-0813
gastrointestinal system mucosa6.01e-0813
endocrine system7.07e-0772


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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