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MCL coexpression mm9:3401: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003914!6.37e-18!47;UBERON:0004872!2.27e-13!33;UBERON:0004535!1.42e-11!23;UBERON:0001009!1.42e-11!23;UBERON:0007100!3.33e-09!18;UBERON:0000948!3.33e-09!18;UBERON:0005498!3.33e-09!18;UBERON:0004140!3.33e-09!18;UBERON:0009881!3.33e-09!18;UBERON:0004141!3.33e-09!18;UBERON:0003084!3.33e-09!18;UBERON:0007005!3.33e-09!18;UBERON:0004139!3.33e-09!18;UBERON:0004291!3.33e-09!18;UBERON:0009854!1.42e-08!23;UBERON:0009856!1.42e-08!23;UBERON:0002107!1.64e-08!22;UBERON:0007499!1.64e-08!22;UBERON:0006925!1.64e-08!22;UBERON:0009497!1.64e-08!22;UBERON:0000015!1.64e-08!22;UBERON:0002423!1.64e-08!22;UBERON:0006235!1.64e-08!22;UBERON:0008835!1.64e-08!22;UBERON:0003894!1.64e-08!22;UBERON:0004161!1.64e-08!22;UBERON:0008836!1.64e-08!22;UBERON:0005256!1.34e-07!45;UBERON:0001048!2.48e-07!134;UBERON:0002365!3.76e-07!25;UBERON:0002330!3.76e-07!25
}}
}}

Revision as of 20:00, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:151856687..151856698,-p6@Dnajb4
Mm9::chr3:151856711..151856732,-p1@Dnajb4
Mm9::chr3:151856737..151856761,-p3@Dnajb4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
epithelial tube6.37e-1847
splanchnic layer of lateral plate mesoderm2.27e-1333
cardiovascular system1.42e-1123
circulatory system1.42e-1123
primary circulatory organ3.33e-0918
heart3.33e-0918
primitive heart tube3.33e-0918
primary heart field3.33e-0918
anterior lateral plate mesoderm3.33e-0918
heart tube3.33e-0918
heart primordium3.33e-0918
cardiac mesoderm3.33e-0918
cardiogenic plate3.33e-0918
heart rudiment3.33e-0918
digestive tract diverticulum1.42e-0823
sac1.42e-0823
liver1.64e-0822
epithelial sac1.64e-0822
digestive gland1.64e-0822
epithelium of foregut-midgut junction1.64e-0822
anatomical boundary1.64e-0822
hepatobiliary system1.64e-0822
foregut-midgut junction1.64e-0822
hepatic diverticulum1.64e-0822
liver primordium1.64e-0822
septum transversum1.64e-0822
liver bud1.64e-0822
trunk mesenchyme1.34e-0745
primordium2.48e-07134
exocrine gland3.76e-0725
exocrine system3.76e-0725


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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