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MCL coexpression mm9:3496: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000066!1.21e-07!25;CL:0000223!5.69e-07!20
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!3.05e-22!118;UBERON:0000925!3.05e-22!118;UBERON:0006595!3.05e-22!118;UBERON:0001007!2.12e-21!116;UBERON:0001555!2.12e-21!116;UBERON:0007026!2.12e-21!116;UBERON:0004921!4.98e-20!114;UBERON:0005409!5.34e-17!47;UBERON:0000160!3.63e-14!31;UBERON:0004923!5.85e-12!24;UBERON:0000344!6.54e-11!15;UBERON:0001242!1.71e-09!13;UBERON:0000060!1.71e-09!13;UBERON:0001262!1.71e-09!13;UBERON:0004786!1.71e-09!13;UBERON:0003929!5.81e-09!55;UBERON:0000490!1.89e-07!66;UBERON:0005911!3.17e-07!69;UBERON:0001041!4.77e-07!80
}}
}}

Revision as of 20:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:115373243..115373255,+p4@Oasl1
Mm9::chr5:115373352..115373363,+p2@Oasl1
Mm9::chr5:115373396..115373409,+p1@Oasl1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
epithelial cell1.21e-0725
endodermal cell5.69e-0720

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure3.05e-22118
endoderm3.05e-22118
presumptive endoderm3.05e-22118
digestive system2.12e-21116
digestive tract2.12e-21116
primitive gut2.12e-21116
subdivision of digestive tract4.98e-20114
gastrointestinal system5.34e-1747
intestine3.63e-1431
organ component layer5.85e-1224
mucosa6.54e-1115
intestinal mucosa1.71e-0913
anatomical wall1.71e-0913
wall of intestine1.71e-0913
gastrointestinal system mucosa1.71e-0913
gut epithelium5.81e-0955
unilaminar epithelium1.89e-0766
endo-epithelium3.17e-0769
foregut4.77e-0780


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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