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MCL coexpression mm9:551: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005418!1.04e-09!5;UBERON:0002472!1.04e-09!5;UBERON:0008784!1.04e-09!5;UBERON:0006058!1.04e-09!5;UBERON:0004709!1.04e-09!5;UBERON:0002529!1.04e-09!5;UBERON:0010538!1.04e-09!5;UBERON:0005420!1.04e-09!5;UBERON:0010758!1.04e-09!5;UBERON:0000978!1.04e-09!5;UBERON:0002103!1.04e-09!5;UBERON:0000376!1.04e-09!5;UBERON:0000154!1.04e-09!5;UBERON:0010709!1.04e-09!5;UBERON:0005730!1.04e-09!5;UBERON:0000981!1.92e-08!4;UBERON:0003608!1.92e-08!4;UBERON:0003826!1.92e-08!4;UBERON:0008202!1.92e-08!4;UBERON:0004381!1.92e-08!4;UBERON:0007273!1.92e-08!4;UBERON:0010912!1.92e-08!4;UBERON:0002513!1.92e-08!4;UBERON:0004375!1.92e-08!4;UBERON:0010740!1.92e-08!4;UBERON:0010363!1.92e-08!4;UBERON:0003860!1.92e-08!4;UBERON:0002428!1.92e-08!4;UBERON:0010742!1.92e-08!4;UBERON:0002495!1.92e-08!4;UBERON:0003464!1.92e-08!4;UBERON:0003606!1.92e-08!4;UBERON:0005893!1.92e-08!4;UBERON:0009749!1.92e-08!4;UBERON:0010712!1.92e-08!4;UBERON:0010886!1.92e-08!4;UBERON:0005254!1.92e-08!4;UBERON:0010885!1.92e-08!4;UBERON:0010881!1.92e-08!4;UBERON:0010882!1.92e-08!4;UBERON:0007844!1.92e-08!4;UBERON:0001441!1.92e-08!4;UBERON:0011249!1.92e-08!4;UBERON:0002091!1.92e-08!4;UBERON:0003285!1.92e-08!4;UBERON:0004288!1.92e-08!4;UBERON:0010129!1.92e-08!4;UBERON:0006234!1.92e-08!4;UBERON:0002106!1.14e-07!6;UBERON:0004457!1.14e-07!6;UBERON:0000042!1.14e-07!6;UBERON:0004854!1.14e-07!6;UBERON:0009034!1.14e-07!6;UBERON:0002095!1.14e-07!6;UBERON:0004782!1.14e-07!6;UBERON:0003281!1.14e-07!6;UBERON:0009664!1.14e-07!6;UBERON:0002296!1.14e-07!6;UBERON:0005602!1.14e-07!6;UBERON:0001179!1.14e-07!6;UBERON:0006293!1.14e-07!6
}}
}}

Revision as of 20:52, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:42547657..42547670,+p@chr10:42547657..42547670
+
Mm9::chr10:42547679..42547691,+p@chr10:42547679..42547691
+
Mm9::chr10:43466346..43466362,+p1@1700027J07Rik
Mm9::chr13:41521365..41521379,-p5@Nedd9
Mm9::chr13:54513728..54513750,-p@chr13:54513728..54513750
-
Mm9::chr19:4295623..4295629,+p@chr19:4295623..4295629
+
Mm9::chr1:166815111..166815121,-p@chr1:166815111..166815121
-
Mm9::chr3:127494292..127494308,+p2@Tifa
Mm9::chr5:104754379..104754387,+p1@Mepe
Mm9::chr7:120439029..120439040,+p@chr7:120439029..120439040
+
Mm9::chr8:96879789..96879809,+p@chr8:96879789..96879809
+
Mm9::chr9:21430100..21430106,+p@chr9:21430100..21430106
+
Mm9::chr9:21430427..21430438,+p@chr9:21430427..21430438
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hindlimb bud1.04e-095
stylopod1.04e-095
lower limb segment1.04e-095
multi-limb segment region1.04e-095
pelvic appendage1.04e-095
limb segment1.04e-095
paired limb/fin segment1.04e-095
pelvic appendage bud1.04e-095
subdivision of organism along appendicular axis1.04e-095
leg1.04e-095
hindlimb1.04e-095
hindlimb stylopod1.04e-095
posterior region of body1.04e-095
pelvic complex1.04e-095
hindlimb/pelvic fin field1.04e-095
femur1.92e-084
hindlimb long bone1.92e-084
upper leg bone1.92e-084
bone of hip region1.92e-084
skeleton of limb1.92e-084
pelvic appendage skeleton1.92e-084
subdivision of skeleton1.92e-084
endochondral bone1.92e-084
bone of free limb or fin1.92e-084
bone of appendage girdle complex1.92e-084
endochondral element1.92e-084
hindlimb mesenchyme1.92e-084
limb bone1.92e-084
bone of pelvic complex1.92e-084
long bone1.92e-084
hindlimb bone1.92e-084
limb long bone1.92e-084
leg bone1.92e-084
limb mesenchyme1.92e-084
limb skeleton subdivision1.92e-084
hindlimb bone pre-cartilage condensation1.92e-084
upper leg mesenchyme1.92e-084
hindlimb cartilage element1.92e-084
limb cartilage element1.92e-084
limb bone pre-cartilage condensation1.92e-084
cartilage element1.92e-084
hindlimb skeleton1.92e-084
appendicular skeletal system1.92e-084
appendicular skeleton1.92e-084
limb of embryo1.92e-084
skeleton1.92e-084
femur cartilage element1.92e-084
femur pre-cartilage condensation1.92e-084
spleen1.14e-076
cavity lining1.14e-076
serous membrane1.14e-076
gastrointestinal system mesentery1.14e-076
stomach region1.14e-076
mesentery1.14e-076
gastrointestinal system serosa1.14e-076
mesentery of stomach1.14e-076
gut mesentery1.14e-076
dorsal mesentery1.14e-076
dorsal mesogastrium1.14e-076
peritoneal cavity1.14e-076
spleen primordium1.14e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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