FFCP PHASE1:Hg19::chr2:128433033..128433085,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000222!1.17e-08!119;CL:0000055!3.44e-08!180;CL:0000057!1.65e-07!75;CL:0000213!4.98e-07!57;CL:0000215!4.98e-07!57 | |ontology_enrichment_celltype=CL:0000222!1.17e-08!119;CL:0000055!3.44e-08!180;CL:0000057!1.65e-07!75;CL:0000213!4.98e-07!57;CL:0000215!4.98e-07!57 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000213,8.95e-07,58;CL:0000215,8.95e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!4.32e-18!241;UBERON:0000477!5.83e-18!286;UBERON:0007023!1.30e-16!115;UBERON:0000468!4.01e-15!659;UBERON:0000025!5.19e-15!194;UBERON:0000475!2.15e-13!365;UBERON:0000467!2.25e-13!625;UBERON:0000480!3.88e-13!626;UBERON:0000481!6.83e-13!347;UBERON:0003914!6.86e-13!118;UBERON:0004872!2.78e-12!84;UBERON:0000483!3.16e-12!309;UBERON:0000119!4.29e-12!312;UBERON:0005256!7.32e-10!143;UBERON:0000055!1.68e-09!69;UBERON:0002100!2.87e-09!216;UBERON:0000062!3.95e-09!511;UBERON:0001981!4.75e-09!60;UBERON:0007500!4.75e-09!60;UBERON:0004537!4.75e-09!60;UBERON:0006965!4.75e-09!60;UBERON:0002049!2.29e-08!79;UBERON:0007798!2.29e-08!79;UBERON:0002417!6.49e-08!61;UBERON:0000916!6.49e-08!61;UBERON:0003104!9.26e-08!238;UBERON:0009142!9.26e-08!238;UBERON:0000064!1.69e-07!219;UBERON:0003064!1.80e-07!37;UBERON:0003103!2.35e-07!69;UBERON:0000490!3.81e-07!138;UBERON:0001009!9.27e-07!113 | |ontology_enrichment_uberon=UBERON:0004111!4.32e-18!241;UBERON:0000477!5.83e-18!286;UBERON:0007023!1.30e-16!115;UBERON:0000468!4.01e-15!659;UBERON:0000025!5.19e-15!194;UBERON:0000475!2.15e-13!365;UBERON:0000467!2.25e-13!625;UBERON:0000480!3.88e-13!626;UBERON:0000481!6.83e-13!347;UBERON:0003914!6.86e-13!118;UBERON:0004872!2.78e-12!84;UBERON:0000483!3.16e-12!309;UBERON:0000119!4.29e-12!312;UBERON:0005256!7.32e-10!143;UBERON:0000055!1.68e-09!69;UBERON:0002100!2.87e-09!216;UBERON:0000062!3.95e-09!511;UBERON:0001981!4.75e-09!60;UBERON:0007500!4.75e-09!60;UBERON:0004537!4.75e-09!60;UBERON:0006965!4.75e-09!60;UBERON:0002049!2.29e-08!79;UBERON:0007798!2.29e-08!79;UBERON:0002417!6.49e-08!61;UBERON:0000916!6.49e-08!61;UBERON:0003104!9.26e-08!238;UBERON:0009142!9.26e-08!238;UBERON:0000064!1.69e-07!219;UBERON:0003064!1.80e-07!37;UBERON:0003103!2.35e-07!69;UBERON:0000490!3.81e-07!138;UBERON:0001009!9.27e-07!113 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.63e-20,114;UBERON:0004111,1.61e-15,240;UBERON:0000025,1.38e-12,192;UBERON:0003914,6.79e-11,117;UBERON:0004872,9.37e-10,83;UBERON:0002417,2.78e-08,60;UBERON:0000916,2.78e-08,60;UBERON:0003064,2.94e-08,28;UBERON:0003104,9.12e-08,160;UBERON:0009142,9.12e-08,160;UBERON:0000055,1.29e-07,68;UBERON:0000483,1.52e-07,306;UBERON:0002100,3.32e-07,199;UBERON:0007500,3.92e-07,59;UBERON:0001981,3.92e-07,59;UBERON:0004537,3.92e-07,59;UBERON:0006965,3.92e-07,59;UBERON:0000119,4.14e-07,309;UBERON:0005256,4.53e-07,122;UBERON:0004876,7.82e-07,11 | |||
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| ||
|short_description=p2@LIMS2 | |short_description=p2@LIMS2 | ||
}} | }} |
Revision as of 06:37, 19 November 2012
Short description: | p2@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LIMS2_5end |
Coexpression cluster: | C3179_smooth_aorta_heart_vagina_umbilical_bladder_left |
Association with transcript: | -173bp_to_ENST00000409808_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 8.95e-07 | 58 |
barrier cell | 8.95e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.63e-20 | 114 |
anatomical conduit | 1.61e-15 | 240 |
tube | 1.38e-12 | 192 |
epithelial tube | 6.79e-11 | 117 |
splanchnic layer of lateral plate mesoderm | 9.37e-10 | 83 |
abdominal segment of trunk | 2.78e-08 | 60 |
abdomen | 2.78e-08 | 60 |
intermediate mesoderm | 2.94e-08 | 28 |
mesenchyme | 9.12e-08 | 160 |
entire embryonic mesenchyme | 9.12e-08 | 160 |
vessel | 1.29e-07 | 68 |
epithelium | 1.52e-07 | 306 |
trunk | 3.32e-07 | 199 |
epithelial tube open at both ends | 3.92e-07 | 59 |
blood vessel | 3.92e-07 | 59 |
blood vasculature | 3.92e-07 | 59 |
vascular cord | 3.92e-07 | 59 |
cell layer | 4.14e-07 | 309 |
trunk mesenchyme | 4.53e-07 | 122 |
urogenital ridge | 7.82e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.