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MCL coexpression mm9:58: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!1.09e-33!15;UBERON:0001242!7.40e-25!13;UBERON:0000060!7.40e-25!13;UBERON:0001262!7.40e-25!13;UBERON:0004786!7.40e-25!13;UBERON:0004923!1.35e-20!24;UBERON:0000160!1.10e-18!31;UBERON:0000331!1.02e-15!3;UBERON:0002116!1.02e-15!3;UBERON:0001204!1.02e-15!3;UBERON:0001168!1.02e-15!3;UBERON:0003350!8.18e-15!9;UBERON:0004808!8.18e-15!9;UBERON:0001277!8.18e-15!9;UBERON:0000485!4.20e-12!11;UBERON:0002108!6.15e-12!4;UBERON:0005409!8.14e-12!47;UBERON:0001962!1.03e-11!2;UBERON:0001961!1.03e-11!2;UBERON:0001744!1.03e-11!2;UBERON:0002465!4.27e-08!3
|ontology_enrichment_uberon=UBERON:0000344!1.09e-33!15;UBERON:0001242!7.40e-25!13;UBERON:0000060!7.40e-25!13;UBERON:0001262!7.40e-25!13;UBERON:0004786!7.40e-25!13;UBERON:0004923!1.35e-20!24;UBERON:0000160!1.10e-18!31;UBERON:0000331!1.02e-15!3;UBERON:0002116!1.02e-15!3;UBERON:0001204!1.02e-15!3;UBERON:0001168!1.02e-15!3;UBERON:0003350!8.18e-15!9;UBERON:0004808!8.18e-15!9;UBERON:0001277!8.18e-15!9;UBERON:0000485!4.20e-12!11;UBERON:0002108!6.15e-12!4;UBERON:0005409!8.14e-12!47;UBERON:0001962!1.03e-11!2;UBERON:0001961!1.03e-11!2;UBERON:0001744!1.03e-11!2;UBERON:0002465!4.27e-08!3
|tfbs_overrepresentation_for_novel_motifs=0.189556,0.0394738,0.0163671,0.884125,0.511542,0.286328,0.109963,0.637661,0.264755,0.0927484,0.103116,0.343194,0.127311,0.0730695,0.778763,0,0.031945,0.904758,0.641335,0.193012,0.661883,0.588225,0.126397,0.40695,0.367101,0.0550111,0.21437,0.0703912,0.106657,1.15342,0.41993,0.328854,0.215425,0.469957,0.0551603,0.601019,0.0108619,0.0896852,1.01455,1.58437,0.479776,0.0162704,0.805335,2.02206,0.000920491,0.206633,0.144982,0.218133,0.501075,0.825554,0.0677819,0.0772925,0.284762,0.0828928,0.439329,0.0802628,1.43002,0.132791,0.163541,0.00648729,0.157375,0.372137,1.6618,0.36202,0.0923777,0.177865,0.424729,0.209154,0.681718,0.128957,0.0880653,1.06483,0.000914433,0.113088,0.000139375,0.113817,2.79629,0.129777,0.426764,1.54721,0.375396,0.0941487,0.04153,0.561417,0.0106287,4.42698e-06,3.1543e-05,0.20179,0.035966,0.849105,0.256044,0.0546822,0.562069,1.0792,7.66421e-06,1.10272,1.18246,0.360353,0.540586,1.11878,0.368465,0.180991,0.0738461,0.247898,0.13907,0.00688565,0.0490222,0.207841,0.073769,0.195536,0.239219,0.19288,0.848039,1.01348,0.557527,1.23106,5.40582e-06,0.251197,0.08129,0.0869324,0.0279786,0.310436,0.930766,0.495058,0.660079,0.436148,0.0350055,0.0288367,0.189586,0.828282,0.573772,0.0971091,0.375551,0.512735,0.285542,1.83994,0.640376,0.449707,0.235869,0.611933,0.294114,0.432425,0.200721,0.555356,0.131358,0.330763,1.24481,0.577642,2.07443,0.0132446,0.0872887,2.2124e-07,0.408444,0.0919605,0.250534,0.57835,0.492259,1.05715,0.255148,0.0611914,0.245117,0.496727,0.911917,0.16444,0.994453,0.478728,0.0285836,0.616845,0.0797059
}}
}}

Revision as of 17:43, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:107880104..107880107,-p@chr10:107880104..107880107
-
Mm9::chr10:115535696..115535704,-p@chr10:115535696..115535704
-
Mm9::chr10:115624741..115624744,+p@chr10:115624741..115624744
+
Mm9::chr10:116333731..116333741,-p4@Gm239
Mm9::chr10:126604725..126604740,+p@chr10:126604725..126604740
+
Mm9::chr10:128346460..128346485,+p8@Cd63
p8@LOC100505035
Mm9::chr10:128346486..128346499,+p9@Cd63
p9@LOC100505035
Mm9::chr10:61337613..61337627,-p@chr10:61337613..61337627
-
Mm9::chr10:7581888..7581901,+p@chr10:7581888..7581901
+
Mm9::chr10:79567046..79567057,-p@chr10:79567046..79567057
-
Mm9::chr10:79567079..79567121,-p@chr10:79567079..79567121
-
Mm9::chr10:79568311..79568322,-p@chr10:79568311..79568322
-
Mm9::chr10:90545398..90545406,-p4@Apaf1
Mm9::chr11:102966085..102966105,+p4@Acbd4
Mm9::chr11:103224942..103224953,-p12@Arhgap27
Mm9::chr11:103224985..103224999,-p8@Arhgap27
Mm9::chr11:115443079..115443090,+p2@Nup85
Mm9::chr11:24219966..24219970,+p@chr11:24219966..24219970
+
Mm9::chr11:54776375..54776376,-p6@Tnip1
Mm9::chr11:59700717..59700721,+p@chr11:59700717..59700721
+
Mm9::chr11:59778438..59778453,-p1@Rasd1
Mm9::chr11:59834720..59834733,-p6@Pemt
Mm9::chr11:66768590..66768604,+p@chr11:66768590..66768604
+
Mm9::chr11:75469413..75469420,+p14@Myo1c
Mm9::chr11:83276483..83276540,-p1@Mmp28
Mm9::chr11:94622225..94622231,-p3@Gm11545
Mm9::chr11:95245976..95245996,+p4@Slc35b1
Mm9::chr11:95246260..95246271,+p3@Slc35b1
Mm9::chr12:112666837..112666863,+p@chr12:112666837..112666863
+
Mm9::chr12:112667369..112667383,+p@chr12:112667369..112667383
+
Mm9::chr12:21502374..21502380,+p@chr12:21502374..21502380
+
Mm9::chr12:40949951..40949969,-p3@Ifrd1
Mm9::chr12:4914406..4914415,-p10@Ubxn2a
Mm9::chr12:80118328..80118339,-p@chr12:80118328..80118339
-
Mm9::chr12:80764821..80764824,+p@chr12:80764821..80764824
+
Mm9::chr12:86479652..86479682,-p@chr12:86479652..86479682
-
Mm9::chr12:86479683..86479693,-p@chr12:86479683..86479693
-
Mm9::chr12:86479702..86479714,-p@chr12:86479702..86479714
-
Mm9::chr13:101323122..101323165,-p7@Ocln
Mm9::chr13:112239431..112239480,-p@chr13:112239431..112239480
-
Mm9::chr13:32937674..32937685,-p@chr13:32937674..32937685
-
Mm9::chr13:32952829..32952836,+p@chr13:32952829..32952836
+
Mm9::chr13:32952878..32952890,+p@chr13:32952878..32952890
+
Mm9::chr13:34027838..34027855,-p1@Serpinb6a
Mm9::chr13:34045071..34045084,+p@chr13:34045071..34045084
+
Mm9::chr13:34045100..34045111,+p@chr13:34045100..34045111
+
Mm9::chr13:41039740..41039753,+p@chr13:41039740..41039753
+
Mm9::chr13:52830961..52830981,-p1@BB123696
Mm9::chr13:58466554..58466556,-p@chr13:58466554..58466556
-
Mm9::chr13:62959775..62959785,-p3@Fbp2
Mm9::chr14:121693634..121693643,-p@chr14:121693634..121693643
-
Mm9::chr14:23969065..23969095,+p@chr14:23969065..23969095
+
Mm9::chr14:52604163..52604188,+p6@Arhgef40
Mm9::chr14:52604201..52604213,+p9@Arhgef40
Mm9::chr14:56247194..56247210,-p2@Ipo4
Mm9::chr15:38563187..38563194,-p@chr15:38563187..38563194
-
Mm9::chr15:38591740..38591754,+p2@Atp6v1c1
Mm9::chr15:58184398..58184415,-p@chr15:58184398..58184415
-
Mm9::chr15:74708816..74708817,-p@chr15:74708816..74708817
-
Mm9::chr15:85889176..85889223,+p1@Gramd4
Mm9::chr16:20364179..20364209,-p6@Abcc5
Mm9::chr16:20695073..20695082,+p11@Fam131a
Mm9::chr16:20803330..20803333,-p@chr16:20803330..20803333
-
Mm9::chr16:20867079..20867087,+p@chr16:20867079..20867087
+
Mm9::chr16:34081884..34081907,-p@chr16:34081884..34081907
-
Mm9::chr16:45455045..45455087,-p1@Gm17783
p1@Gm609
Mm9::chr16:96535332..96535334,+p@chr16:96535332..96535334
+
Mm9::chr17:15511590..15511601,+p5@ENSMUST00000153434
Mm9::chr17:25711365..25711370,+p@chr17:25711365..25711370
+
Mm9::chr17:25893598..25893610,+p@chr17:25893598..25893610
+
Mm9::chr17:25910714..25910723,+p2@Narfl
Mm9::chr17:32562225..32562240,-p@chr17:32562225..32562240
-
Mm9::chr17:34341529..34341538,+p3@Tap2
Mm9::chr17:37026609..37026620,-p3@Trim40
Mm9::chr17:37035264..37035284,+p2@Trim31
Mm9::chr17:37330865..37330885,+p1@Ubd
Mm9::chr17:37620488..37620504,-p1@H2-M2
Mm9::chr17:37620515..37620526,-p2@H2-M2
Mm9::chr17:41016971..41016976,-p@chr17:41016971..41016976
-
Mm9::chr17:41017293..41017307,-p@chr17:41017293..41017307
-
Mm9::chr17:49588736..49588742,+p2@Mocs1
Mm9::chr17:50439683..50439689,-p@chr17:50439683..50439689
-
Mm9::chr17:56144981..56144988,-p2@Stap2
Mm9::chr17:73681574..73681576,+p@chr17:73681574..73681576
+
Mm9::chr17:95264226..95264262,+p@chr17:95264226..95264262
+
Mm9::chr17:95264277..95264286,+p@chr17:95264277..95264286
+
Mm9::chr18:21275368..21275371,-p@chr18:21275368..21275371
-
Mm9::chr18:35886516..35886542,+p2@1700066B19Rik
Mm9::chr18:36953486..36953503,+p2@Zmat2
Mm9::chr19:11043250..11043262,-p@chr19:11043250..11043262
-
Mm9::chr19:18805919..18805930,+p@chr19:18805919..18805930
+
Mm9::chr19:4059037..4059061,-p@chr19:4059037..4059061
-
Mm9::chr19:4059077..4059099,-p@chr19:4059077..4059099
-
Mm9::chr1:127341141..127341148,+p@chr1:127341141..127341148
+
Mm9::chr1:127346940..127346945,-p@chr1:127346940..127346945
-
Mm9::chr1:16041633..16041635,+p@chr1:16041633..16041635
+
Mm9::chr1:167766612..167766636,-p@chr1:167766612..167766636
-
Mm9::chr1:174361141..174361152,+p@chr1:174361141..174361152
+
Mm9::chr1:178804530..178804541,+p@chr1:178804530..178804541
+
Mm9::chr1:179671150..179671165,+p@chr1:179671150..179671165
+
Mm9::chr1:179674769..179674774,-p@chr1:179674769..179674774
-
Mm9::chr1:183215926..183215959,+p@chr1:183215926..183215959
+
Mm9::chr1:195129567..195129580,+p8@Lamb3
Mm9::chr1:61685567..61685587,+p2@Pard3b
Mm9::chr1:83113335..83113351,+p1@Ccl20
Mm9::chr1:91000343..91000358,+p@chr1:91000343..91000358
+
Mm9::chr1:94601573..94601580,+p@chr1:94601573..94601580
+
Mm9::chr2:11414279..11414290,-p@chr2:11414279..11414290
-
Mm9::chr2:122124454..122124473,-p1@Duox2
Mm9::chr2:126759603..126759616,-p@chr2:126759603..126759616
-
Mm9::chr2:131178549..131178568,-p3@Rnf24
Mm9::chr2:13415278..13415284,-p@chr2:13415278..13415284
-
Mm9::chr2:13415287..13415297,-p@chr2:13415287..13415297
-
Mm9::chr2:13415301..13415317,-p@chr2:13415301..13415317
-
Mm9::chr2:13415322..13415332,-p@chr2:13415322..13415332
-
Mm9::chr2:155652189..155652200,-p4@Eif6
Mm9::chr2:155652201..155652217,-p2@Eif6
Mm9::chr2:155652383..155652446,-p1@Eif6
Mm9::chr2:158186303..158186346,-p@chr2:158186303..158186346
-
Mm9::chr2:25280152..25280193,+p1@Fut7
Mm9::chr2:26450453..26450465,-p@chr2:26450453..26450465
-
Mm9::chr2:28438667..28438694,-p3@Gtf3c5
Mm9::chr2:32477049..32477073,+p12@Ak1
Mm9::chr2:32627479..32627494,-p@chr2:32627479..32627494
-
Mm9::chr2:32631328..32631349,+p1@Ptrh1
Mm9::chr2:32631361..32631371,+p3@Ptrh1
Mm9::chr2:38469194..38469205,-p@chr2:38469194..38469205
-
Mm9::chr2:38469215..38469226,-p@chr2:38469215..38469226
-
Mm9::chr2:38469229..38469240,-p@chr2:38469229..38469240
-
Mm9::chr2:38469247..38469270,-p@chr2:38469247..38469270
-
Mm9::chr2:38469278..38469287,-p@chr2:38469278..38469287
-
Mm9::chr3:131153617..131153630,-p@chr3:131153617..131153630
-
Mm9::chr3:132292886..132292899,+p@chr3:132292886..132292899
+
Mm9::chr3:132292908..132292927,+p@chr3:132292908..132292927
+
Mm9::chr3:3556493..3556503,+p@chr3:3556493..3556503
+
Mm9::chr3:36374526..36374597,-p1@Anxa5
Mm9::chr3:7612702..7612705,+p1@ENSMUST00000156286
p1@uc008ool.1
Mm9::chr3:88755012..88755037,-p8@Dap3
Mm9::chr3:89041849..89041862,-p@chr3:89041849..89041862
-
Mm9::chr4:104940057..104940067,+p@chr4:104940057..104940067
+
Mm9::chr4:104940113..104940131,+p@chr4:104940113..104940131
+
Mm9::chr4:114914645..114914653,+p1@Cyp4a29-ps
Mm9::chr4:119330693..119330713,-p@chr4:119330693..119330713
-
Mm9::chr4:119330719..119330733,-p@chr4:119330719..119330733
-
Mm9::chr4:122673187..122673201,+p2@Mycl1
Mm9::chr4:123465086..123465098,+p2@Rhbdl2
Mm9::chr4:133899438..133899450,+p8@Slc30a2
Mm9::chr4:133899513..133899523,+p11@Slc30a2
Mm9::chr4:142835790..142835793,-p@chr4:142835790..142835793
-
Mm9::chr4:151574105..151574148,+p10@Acot7
Mm9::chr4:33335458..33335464,-p2@Pnrc1
Mm9::chr4:33335698..33335727,-p11@Pnrc1
Mm9::chr4:49610274..49610288,-p7@2810432L12Rik
Mm9::chr4:62163267..62163294,-p2@Hdhd3
Mm9::chr4:6421389..6421416,-p@chr4:6421389..6421416
-
Mm9::chr5:110759775..110759786,+p3@Pole
Mm9::chr5:118619594..118619598,-p@chr5:118619594..118619598
-
Mm9::chr5:129602530..129602546,+p2@Gpr133
Mm9::chr5:129602591..129602601,+p4@Gpr133
Mm9::chr5:129602615..129602646,+p1@Gpr133
Mm9::chr5:129602655..129602675,+p3@Gpr133
Mm9::chr5:129710202..129710207,+p@chr5:129710202..129710207
+
Mm9::chr5:20981015..20981019,+p@chr5:20981015..20981019
+
Mm9::chr5:23377178..23377183,-p@chr5:23377178..23377183
-
Mm9::chr5:32263943..32263958,-p@chr5:32263943..32263958
-
Mm9::chr5:32301242..32301266,-p@chr5:32301242..32301266
-
Mm9::chr5:8660605..8660623,+p@chr5:8660605..8660623
+
Mm9::chr5:91068698..91068709,-p@chr5:91068698..91068709
-
Mm9::chr5:91083450..91083463,-p@chr5:91083450..91083463
-
Mm9::chr5:92792309..92792321,-p1@Cxcl11
Mm9::chr6:125287812..125287831,+p@chr6:125287812..125287831
+
Mm9::chr6:147996625..147996638,-p@chr6:147996625..147996638
-
Mm9::chr6:3437371..3437419,-p@chr6:3437371..3437419
-
Mm9::chr6:3437479..3437484,-p@chr6:3437479..3437484
-
Mm9::chr6:48790719..48790730,-p12@Tmem176b
Mm9::chr6:48822835..48822859,+p@chr6:48822835..48822859
+
Mm9::chr6:48822870..48822884,+p@chr6:48822870..48822884
+
Mm9::chr6:48822942..48822953,+p@chr6:48822942..48822953
+
Mm9::chr6:50334471..50334493,-p@chr6:50334471..50334493
-
Mm9::chr6:73198571..73198582,+p3@Suclg1
Mm9::chr6:82998517..82998522,+p2@Loxl3
Mm9::chr6:83085886..83085897,+p11@Rtkn
Mm9::chr7:106530807..106530823,-p@chr7:106530807..106530823
-
Mm9::chr7:106530830..106530850,-p@chr7:106530830..106530850
-
Mm9::chr7:120406547..120406552,-p@chr7:120406547..120406552
-
Mm9::chr7:121324889..121324921,+p@chr7:121324889..121324921
+
Mm9::chr7:138180820..138180825,+p@chr7:138180820..138180825
+
Mm9::chr7:18989385..18989390,-p@chr7:18989385..18989390
-
Mm9::chr7:19110105..19110113,-p@chr7:19110105..19110113
-
Mm9::chr7:19152723..19152744,-p4@Psg27
Mm9::chr7:19152867..19152872,-p5@Psg27
Mm9::chr7:26237108..26237137,+p@chr7:26237108..26237137
+
Mm9::chr7:30290466..30290492,-p4@Sipa1l3
Mm9::chr7:31758648..31758666,-p7@Lsr
Mm9::chr7:38968204..38968218,+p5@1600014C10Rik
Mm9::chr7:38968769..38968776,+p10@1600014C10Rik
Mm9::chr7:38968895..38968904,+p6@1600014C10Rik
Mm9::chr7:38971273..38971281,+p@chr7:38971273..38971281
+
Mm9::chr7:51787434..51787448,-p1@Spib
Mm9::chr7:51789056..51789061,+p@chr7:51789056..51789061
+
Mm9::chr7:52091656..52091664,+p3@Il4i1
p3@Nup62-il4i1
Mm9::chr7:6120193..6120204,-p@chr7:6120193..6120204
-
Mm9::chr8:112485811..112485833,-p3@Marveld3
Mm9::chr8:124945700..124945703,+p1@Il17c
Mm9::chr8:12573205..12573262,-p@chr8:12573205..12573262
-
Mm9::chr8:12573279..12573290,-p@chr8:12573279..12573290
-
Mm9::chr8:12573311..12573336,-p1@uc009kwb.1
Mm9::chr8:13351651..13351657,+p@chr8:13351651..13351657
+
Mm9::chr8:13351743..13351770,+p@chr8:13351743..13351770
+
Mm9::chr8:22466694..22466699,-p1@Defa-rs1
Mm9::chr8:22814114..22814121,-p1@AY761184
Mm9::chr8:80471736..80471741,-p@chr8:80471736..80471741
-
Mm9::chr9:104230353..104230354,-p@chr9:104230353..104230354
-
Mm9::chr9:107955485..107955496,+p1@Amigo3
Mm9::chr9:108997020..108997029,+p@chr9:108997020..108997029
+
Mm9::chr9:21961347..21961358,+p3@Pigyl
Mm9::chr9:40128452..40128473,-p@chr9:40128452..40128473
-
Mm9::chr9:45550656..45550668,+p@chr9:45550656..45550668
+
Mm9::chr9:46045486..46045491,-p@chr9:46045486..46045491
-
Mm9::chr9:5332819..5332833,+p@chr9:5332819..5332833
+
Mm9::chr9:55259058..55259085,-p@chr9:55259058..55259085
-
Mm9::chr9:55278072..55278084,+p@chr9:55278072..55278084
+
Mm9::chr9:56730814..56730824,-p@chr9:56730814..56730824
-
Mm9::chr9:61283562..61283566,+p@chr9:61283562..61283566
+
Mm9::chr9:65270756..65270768,-p5@Ostb
Mm9::chr9:65270790..65270801,-p7@Ostb
Mm9::chr9:65270818..65270829,-p8@Ostb
Mm9::chr9:65270899..65270912,-p4@Ostb
Mm9::chr9:65271051..65271063,-p10@Ostb
Mm9::chr9:65992829..65992835,+p@chr9:65992829..65992835
+
Mm9::chr9:71439292..71439305,+p@chr9:71439292..71439305
+
Mm9::chrX:166435044..166435053,-p@chrX:166435044..166435053
-
Mm9::chrX:93650951..93650975,+p5@Heph


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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