FFCP PHASE1:Hg19::chr13:24153554..24153576,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55504|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11915|TSSclassifier=S|UniProt=|association_with_transcript=35bp_to_ENST00000382263_5end|coexpression_cluster_id=C2257|description=CAGE_peak_4_at_TNFRSF19_5end|id=chr13:24153554..24153576,+|ontology_enrichment_celltype=CL:0000055!1.02e-09!180;CL:0002620!3.78e-09!23;CL:0000057!5.89e-08!75|ontology_enrichment_celltype_v019=CL:0002540;7.68e-11;6!CL:0002092;8.94e-09;10!CL:0002622;2.69e-08;3!CL:0002620;3.26e-07;23|ontology_enrichment_celltype_v019_2=CL:0002540,2.26e-10,6;CL:0002092,2.10e-08,10;CL:0002622,2.96e-08,3;CL:0000057,3.08e-07,76;CL:0002620,3.74e-07,23|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!2.35e-09!95;UBERON:0000475!3.02e-09!365|ontology_enrichment_uberon_v019=UBERON:0004765;1.05e-11;26!UBERON:0001434;4.67e-11;36!UBERON:0003937;8.25e-10;12!UBERON:0005399;8.25e-10;12!UBERON:0011135;2.76e-08;5!UBERON:0002216;2.76e-08;5!UBERON:0011134;2.76e-08;5!UBERON:0002209;2.76e-08;5!UBERON:0002213;2.76e-08;5!UBERON:0007844;2.76e-08;5!UBERON:0011138;2.76e-08;5!UBERON:0001130;2.76e-08;5!UBERON:0001066;2.76e-08;5!UBERON:0001468;2.76e-08;5!UBERON:0001474;4.32e-08;18!UBERON:0002367;5.75e-08;11!UBERON:0010147;5.75e-08;11!UBERON:0004905;5.76e-08;8!UBERON:0000982;5.76e-08;8!UBERON:0004770;5.76e-08;8!UBERON:0002371;3.47e-07;12!UBERON:0000075;4.46e-07;16|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.93e-10,99;UBERON:0003937,1.05e-09,12;UBERON:0005399,1.05e-09,12;UBERON:0011135,1.44e-08,5;UBERON:0002216,1.44e-08,5;UBERON:0011134,1.44e-08,5;UBERON:0002209,1.44e-08,5;UBERON:0002213,1.44e-08,5;UBERON:0005856,1.44e-08,5;UBERON:0005866,1.44e-08,5;UBERON:0005863,1.44e-08,5;UBERON:0007844,1.44e-08,5;UBERON:0011138,1.44e-08,5;UBERON:0001130,1.44e-08,5;UBERON:0001066,1.44e-08,5;UBERON:0001468,1.44e-08,5;UBERON:0004905,3.54e-08,8;UBERON:0000982,3.54e-08,8;UBERON:0004770,3.54e-08,8;UBERON:0002367,6.69e-08,11;UBERON:0010147,6.69e-08,11;UBERON:0009846,6.69e-08,11;UBERON:0003353,6.69e-08,11;UBERON:0004902,6.69e-08,11;UBERON:0003820,6.69e-08,11;UBERON:0009847,6.69e-08,11;UBERON:0000161,1.02e-07,36;UBERON:0001007,2.25e-07,145;UBERON:0001555,2.25e-07,145;UBERON:0007026,2.25e-07,145;UBERON:0000075,3.09e-07,16|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,1.8564952944007,1.98838425436749,0,0,0,0,0.492484232307152,0.204000691244253,0,0.572471974262113,0.273748850145768,1.25542639594803,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.786839080455332,0,0.205601498999509,0,0,0,0,0.111410456885174,0.589211814949674,0.221533894583621,0.541607727530031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15877215168659,0,0.486634870302636,0.661743720148475,0.665188192387692,0.966182642624386,0.785874452986276,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,1.21085942115945,0.576175924479999,0,0,0,0.448346041655403,0.117434498643765,0.809364721840658,0.842704840213491,0.408308342509787,0.245668634623536,0.206651562351531,7.12801714369232,2.96720315134268,0,0,0,0.375355559615893,0.831192346452549,3.5118209670467,0.919463387397059,2.85452311922534,0.226864366320042,1.25572744982203,0.427114777637135,0.635795703478686,2.70081986475962,0.618315175430633,1.03056216018252,1.11670113798954,1.68776332241266,0.487185025805993,1.51460264546469,2.39329736469978,1.13152239773168,2.84007674013291,0.705264687593482,0.508681776931463,0,0,0,0,0.132529768321485,0.464775771478074,0.414644220061482,0,0.36497735907583,0,0.643240938192885,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,2.09080345523293,0,0,0,0,0,0,1.03993478527958,0,0.115930404975077,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0.300343057843917,0,0.336393253036082,0,0.1466765716419,0.646358578788889,0,0,1.59562869950922,4.16029747645464,1.02882949704857,0,1.0656887160644,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,1.10422342547226,0.500170521059677,3.52644530809656,0.207970861530807,0,0.157702415033935,0.35142424497814,3.91229929646035,0,0,0.664225598535437,0.553107505625109,1.65078867489357,0,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0.925258162815933,0,1.14978018419333,1.55776328755086,0.581051892299796,2.90062679019893,0,0.184161977871793,1.37777337797528,3.27764102412091,1.18011973463482,0,0,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0,0.650756789328606,0.206082023295445,0.366277859273374,0.165018999841176,0,0,0,0.580024309752732,0.154048617114644,0,0.137836572484531,0.107420244868274,0.580066775656914,0,0.1780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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55504 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11915 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=35bp_to_ENST00000382263_5end | |||
|coexpression_cluster_id=C2257 | |||
|description=CAGE_peak_4_at_TNFRSF19_5end | |||
|id=chr13:24153554..24153576,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.02e-09!180;CL:0002620!3.78e-09!23;CL:0000057!5.89e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0002540;7.68e-11;6!CL:0002092;8.94e-09;10!CL:0002622;2.69e-08;3!CL:0002620;3.26e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,2.26e-10,6;CL:0002092,2.10e-08,10;CL:0002622,2.96e-08,3;CL:0000057,3.08e-07,76;CL:0002620,3.74e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.35e-09!95;UBERON:0000475!3.02e-09!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0004765;1.05e-11;26!UBERON:0001434;4.67e-11;36!UBERON:0003937;8.25e-10;12!UBERON:0005399;8.25e-10;12!UBERON:0011135;2.76e-08;5!UBERON:0002216;2.76e-08;5!UBERON:0011134;2.76e-08;5!UBERON:0002209;2.76e-08;5!UBERON:0002213;2.76e-08;5!UBERON:0007844;2.76e-08;5!UBERON:0011138;2.76e-08;5!UBERON:0001130;2.76e-08;5!UBERON:0001066;2.76e-08;5!UBERON:0001468;2.76e-08;5!UBERON:0001474;4.32e-08;18!UBERON:0002367;5.75e-08;11!UBERON:0010147;5.75e-08;11!UBERON:0004905;5.76e-08;8!UBERON:0000982;5.76e-08;8!UBERON:0004770;5.76e-08;8!UBERON:0002371;3.47e-07;12!UBERON:0000075;4.46e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.93e-10,99;UBERON:0003937,1.05e-09,12;UBERON:0005399,1.05e-09,12;UBERON:0011135,1.44e-08,5;UBERON:0002216,1.44e-08,5;UBERON:0011134,1.44e-08,5;UBERON:0002209,1.44e-08,5;UBERON:0002213,1.44e-08,5;UBERON:0005856,1.44e-08,5;UBERON:0005866,1.44e-08,5;UBERON:0005863,1.44e-08,5;UBERON:0007844,1.44e-08,5;UBERON:0011138,1.44e-08,5;UBERON:0001130,1.44e-08,5;UBERON:0001066,1.44e-08,5;UBERON:0001468,1.44e-08,5;UBERON:0004905,3.54e-08,8;UBERON:0000982,3.54e-08,8;UBERON:0004770,3.54e-08,8;UBERON:0002367,6.69e-08,11;UBERON:0010147,6.69e-08,11;UBERON:0009846,6.69e-08,11;UBERON:0003353,6.69e-08,11;UBERON:0004902,6.69e-08,11;UBERON:0003820,6.69e-08,11;UBERON:0009847,6.69e-08,11;UBERON:0000161,1.02e-07,36;UBERON:0001007,2.25e-07,145;UBERON:0001555,2.25e-07,145;UBERON:0007026,2.25e-07,145;UBERON:0000075,3.09e-07,16 | |||
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| |||
|short_description=p4@TNFRSF19 | |||
}} |
Revision as of 01:47, 11 September 2013
Short description: | p4@TNFRSF19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TNFRSF19_5end |
Coexpression cluster: | C2257_gastric_Fibroblast_synovial_alveolar_osteosarcoma_Smooth_mesenchymal |
Association with transcript: | 35bp_to_ENST00000382263_5end |
EntrezGene: | TNFRSF19 |
HGNC: | 11915 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 2.26e-10 | 6 |
bone marrow cell | 2.10e-08 | 10 |
prostate stromal cell | 2.96e-08 | 3 |
fibroblast | 3.08e-07 | 76 |
skin fibroblast | 3.74e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.93e-10 | 99 |
sex gland | 1.05e-09 | 12 |
male reproductive gland | 1.05e-09 | 12 |
intervertebral cartilage | 1.44e-08 | 5 |
symphysis | 1.44e-08 | 5 |
nonsynovial joint | 1.44e-08 | 5 |
fibrous joint | 1.44e-08 | 5 |
cartilaginous joint | 1.44e-08 | 5 |
developing mesenchymal condensation | 1.44e-08 | 5 |
pre-cartilage condensation | 1.44e-08 | 5 |
cartilaginous condensation | 1.44e-08 | 5 |
cartilage element | 1.44e-08 | 5 |
post-cranial axial skeletal system | 1.44e-08 | 5 |
vertebral column | 1.44e-08 | 5 |
intervertebral disk | 1.44e-08 | 5 |
intervertebral joint | 1.44e-08 | 5 |
articulation | 3.54e-08 | 8 |
skeletal joint | 3.54e-08 | 8 |
articular system | 3.54e-08 | 8 |
prostate gland | 6.69e-08 | 11 |
male accessory sex gland | 6.69e-08 | 11 |
embryonic cloacal epithelium | 6.69e-08 | 11 |
epithelium of hindgut | 6.69e-08 | 11 |
urogenital sinus epithelium | 6.69e-08 | 11 |
prostate bud | 6.69e-08 | 11 |
prostate field | 6.69e-08 | 11 |
orifice | 1.02e-07 | 36 |
digestive system | 2.25e-07 | 145 |
digestive tract | 2.25e-07 | 145 |
primitive gut | 2.25e-07 | 145 |
subdivision of skeletal system | 3.09e-07 | 16 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.