FFCP PHASE1:Hg19::chr16:89778248..89778268,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100128881|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_NR_036480,uc002fon.1_5end|description=CAGE_peak_2_at_LOC100128881_5end|id=chr16:89778248..89778268,+|ontology_enrichment_celltype=CL:0000066!8.68e-22!254;CL:0000012!3.61e-13!682;CL:0000548!4.29e-13!679;CL:0000004!4.29e-13!679;CL:0000255!4.29e-13!679;CL:0000076!7.57e-09!62;CL:0002076!1.87e-08!43;CL:0000003!3.15e-08!722;CL:0000063!5.77e-08!578;CL:0002321!5.25e-07!248;CL:0000220!9.32e-07!246|ontology_enrichment_celltype_v019=CL:0000082;3.72e-07;19|ontology_enrichment_celltype_v019_2=CL:0000066,6.37e-23,253;CL:0000076,4.83e-09,63;CL:0002076,9.95e-09,42;CL:0000082,2.43e-07,19;CL:0002321,6.29e-07,250|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.40e-16!235;DOID:14566!1.73e-15!239;DOID:0050686!3.42e-13!137;DOID:0050687!3.20e-11!143;DOID:305!1.67e-10!106;DOID:2531!2.16e-10!51;DOID:0060083!2.16e-10!51;DOID:1240!8.35e-09!39;DOID:8692!1.18e-08!31;DOID:1749!3.98e-07!14|ontology_enrichment_disease_v019=DOID:8692;9.55e-10;31!DOID:1240;1.52e-08;39!DOID:1749;5.04e-07;14!DOID:2531;6.95e-07;51!DOID:0060083;6.95e-07;51|ontology_enrichment_disease_v019_2=DOID:162,2.19e-20,235;DOID:14566,2.01e-19,239;DOID:0050686,5.14e-16,137;DOID:0050687,2.46e-13,143;DOID:2531,2.80e-12,51;DOID:0060083,2.80e-12,51;DOID:305,9.54e-12,106;DOID:1240,3.66e-10,39;DOID:8692,6.22e-10,31;DOID:1749,2.91e-07,14|ontology_enrichment_uberon=UBERON:0005153!4.39e-08!37;UBERON:0004119!1.45e-07!169;UBERON:0000925!1.45e-07!169;UBERON:0006595!1.45e-07!169;UBERON:0005178!6.78e-07!34;UBERON:0002224!6.78e-07!34|ontology_enrichment_uberon_v019=UBERON:0004802;3.72e-07;19!UBERON:0000115;3.72e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0005153,2.57e-08,37;UBERON:0005177,1.15e-07,101;UBERON:0005157,1.17e-07,47;UBERON:0004802,2.43e-07,19;UBERON:0000115,2.43e-07,19;UBERON:0000487,4.64e-07,22|phase1_expression=0,0.214100523890983,0,0,0,0,0,1.26343974685366,0,4.66894479352867,13.2582221914761,0.873765488520689,1.05506791291381,0.74259811776028,0.662794751455832,0,0,0.730310090387373,1.46379839637152,2.09305798730539,2.04000691244253,0.626909442956176,0.85870796139317,3.42186062682211,2.13422487311165,1.75750833220288,2.38091709404843,1.81034797021462,0,0.383829398097213,0,8.27479102031034,6.32532429434325,1.47901604066715,5.73257284294232,6.53978469442139,2.93600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,1.75996244461323,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0.954053754535364,1.1384259382189,0.587237189370939,0.764546456250458,0,1.12101712596307,2.89722493252585,0.590129310341499,0,0.411202997999018,0.334372990781356,1.30368906653436,0,0,0.557052284425868,0,0,0,0.768547918354051,0.390178042679635,0,0.276350017785848,0,0.444859689486181,1.07016331235885,0,0.679856056185397,0,0,0,0.637130828648193,0,1.90090408889675,0.301150238155546,1.27986611154418,1.24930726552346,0.710331756132051,0,0.201606743224732,0,0.868946423296794,2.43806866313962,2.01210257911091,3.19656404608826,1.80719576192283,2.00535164254356,1.01392563272577,1.5905718941022,0,1.41802225746102,1.99556457716308,2.3715392137144,0.327447688744282,6.55731518926576,6.3033355273353,0.324547393654683,0,0,0,0,0,2.78267370313387,3.4409383804245,4.51282652089873,3.95715559346807,4.19499436209906,7.97842321626196,7.52381879532518,0.258416759169329,0.71153252537342,0.33472061276467,0.805658634218294,1.52054421143703,2.92874469057803,4.04429388380456,6.48113558305408,2.67899184852239,2.46982309888787,3.15312145353302,4.5994991239765,6.6448596169769,3.48083313467774,0,0,4.36094052142534,0,0.12663051166458,1.72131935057184,1.72101972449288,0.354668382198357,1.68203280042692,6.4049397437823,2.96001058100592,1.8672662123986,2.02066008104532,2.12500474047496,0.756787138224657,1.15235184896,7.96692868234909,3.43376084513353,2.85235910772225,4.48346041655403,2.23125547423153,2.26622122115384,3.23036855415172,2.24569588380383,2.7023549808589,1.44656093646072,0,0.741800787835671,3.64064544775211,4.31170885089743,2.69337782326506,2.75260743718321,2.49357703935765,0.438977620880838,0.612975591598039,0.300476117813194,1.92834711372036,0.717558542755448,0,0.423863802319124,0,0.721367704669072,0.515281080091258,0.558350568994769,0.168776332241266,0.194874010322397,1.51460264546469,0.368199594569197,0.646584227275248,0,0.503760491138201,1.18692414617341,0.966304265816484,0.818238361772504,2.29443676311203,2.19552671033272,3.31324420803713,2.32387885739037,1.7622379352613,3.02785021050754,1.09493207722749,0,0.643240938192885,0,0.464367928031979,1.44375896333917,2.12952240071719,0.842923450390509,1.44606617930089,1.65440959098591,1.74303555273925,2.37270619111097,1.07865046528132,0.98110732562673,1.15424147083917,0.738155454624648,0,2.057870056657,5.88034845542168,1.26755034821831,0,3.54473944008842,1.7658523976586,1.72183813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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100128881 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_036480,uc002fon.1_5end | |||
|description=CAGE_peak_2_at_LOC100128881_5end | |||
|id=chr16:89778248..89778268,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.68e-22!254;CL:0000012!3.61e-13!682;CL:0000548!4.29e-13!679;CL:0000004!4.29e-13!679;CL:0000255!4.29e-13!679;CL:0000076!7.57e-09!62;CL:0002076!1.87e-08!43;CL:0000003!3.15e-08!722;CL:0000063!5.77e-08!578;CL:0002321!5.25e-07!248;CL:0000220!9.32e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000082;3.72e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.37e-23,253;CL:0000076,4.83e-09,63;CL:0002076,9.95e-09,42;CL:0000082,2.43e-07,19;CL:0002321,6.29e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.40e-16!235;DOID:14566!1.73e-15!239;DOID:0050686!3.42e-13!137;DOID:0050687!3.20e-11!143;DOID:305!1.67e-10!106;DOID:2531!2.16e-10!51;DOID:0060083!2.16e-10!51;DOID:1240!8.35e-09!39;DOID:8692!1.18e-08!31;DOID:1749!3.98e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:8692;9.55e-10;31!DOID:1240;1.52e-08;39!DOID:1749;5.04e-07;14!DOID:2531;6.95e-07;51!DOID:0060083;6.95e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.19e-20,235;DOID:14566,2.01e-19,239;DOID:0050686,5.14e-16,137;DOID:0050687,2.46e-13,143;DOID:2531,2.80e-12,51;DOID:0060083,2.80e-12,51;DOID:305,9.54e-12,106;DOID:1240,3.66e-10,39;DOID:8692,6.22e-10,31;DOID:1749,2.91e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0005153!4.39e-08!37;UBERON:0004119!1.45e-07!169;UBERON:0000925!1.45e-07!169;UBERON:0006595!1.45e-07!169;UBERON:0005178!6.78e-07!34;UBERON:0002224!6.78e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;3.72e-07;19!UBERON:0000115;3.72e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005153,2.57e-08,37;UBERON:0005177,1.15e-07,101;UBERON:0005157,1.17e-07,47;UBERON:0004802,2.43e-07,19;UBERON:0000115,2.43e-07,19;UBERON:0000487,4.64e-07,22 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,1.26343974685366,0,4.66894479352867,13.2582221914761,0.873765488520689,1.05506791291381,0.74259811776028,0.662794751455832,0,0,0.730310090387373,1.46379839637152,2.09305798730539,2.04000691244253,0.626909442956176,0.85870796139317,3.42186062682211,2.13422487311165,1.75750833220288,2.38091709404843,1.81034797021462,0,0.383829398097213,0,8.27479102031034,6.32532429434325,1.47901604066715,5.73257284294232,6.53978469442139,2.93600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,1.75996244461323,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0.954053754535364,1.1384259382189,0.587237189370939,0.764546456250458,0,1.12101712596307,2.89722493252585,0.590129310341499,0,0.411202997999018,0.334372990781356,1.30368906653436,0,0,0.557052284425868,0,0,0,0.768547918354051,0.390178042679635,0,0.276350017785848,0,0.444859689486181,1.07016331235885,0,0.679856056185397,0,0,0,0.637130828648193,0,1.90090408889675,0.301150238155546,1.27986611154418,1.24930726552346,0.710331756132051,0,0.201606743224732,0,0.868946423296794,2.43806866313962,2.01210257911091,3.19656404608826,1.80719576192283,2.00535164254356,1.01392563272577,1.5905718941022,0,1.41802225746102,1.99556457716308,2.3715392137144,0.327447688744282,6.55731518926576,6.3033355273353,0.324547393654683,0,0,0,0,0,2.78267370313387,3.4409383804245,4.51282652089873,3.95715559346807,4.19499436209906,7.97842321626196,7.52381879532518,0.258416759169329,0.71153252537342,0.33472061276467,0.805658634218294,1.52054421143703,2.92874469057803,4.04429388380456,6.48113558305408,2.67899184852239,2.46982309888787,3.15312145353302,4.5994991239765,6.6448596169769,3.48083313467774,0,0,4.36094052142534,0,0.12663051166458,1.72131935057184,1.72101972449288,0.354668382198357,1.68203280042692,6.4049397437823,2.96001058100592,1.8672662123986,2.02066008104532,2.12500474047496,0.756787138224657,1.15235184896,7.96692868234909,3.43376084513353,2.85235910772225,4.48346041655403,2.23125547423153,2.26622122115384,3.23036855415172,2.24569588380383,2.7023549808589,1.44656093646072,0,0.741800787835671,3.64064544775211,4.31170885089743,2.69337782326506,2.75260743718321,2.49357703935765,0.438977620880838,0.612975591598039,0.300476117813194,1.92834711372036,0.717558542755448,0,0.423863802319124,0,0.721367704669072,0.515281080091258,0.558350568994769,0.168776332241266,0.194874010322397,1.51460264546469,0.368199594569197,0.646584227275248,0,0.503760491138201,1.18692414617341,0.966304265816484,0.818238361772504,2.29443676311203,2.19552671033272,3.31324420803713,2.32387885739037,1.7622379352613,3.02785021050754,1.09493207722749,0,0.643240938192885,0,0.464367928031979,1.44375896333917,2.12952240071719,0.842923450390509,1.44606617930089,1.65440959098591,1.74303555273925,2.37270619111097,1.07865046528132,0.98110732562673,1.15424147083917,0.738155454624648,0,2.057870056657,5.88034845542168,1.26755034821831,0,3.54473944008842,1.7658523976586,1.72183813960359,2.91665277507493,3.73150970389327,12.3641928583382,4.12168786887686,4.35165692245089,7.81939932744779,3.11980435583874,2.88662684050547,1.39116485970092,0.587043471179108,1.58803092537181,2.77791307545966,1.52203321787679,7.11183958163348,7.72637545885385,0,0,0,0,1.17587489739202,1.13420077793909,2.95543124919399,5.52204483176528,3.06706143332169,0,0,0,0.432359860250884,0.12624243342638,0.571481048629521,1.90994212779139,0,3.4214489204541,1.64523988325318,0.901029173531752,1.71495859578347,3.02753927732474,1.30788020649984,2.2001485746285,0.775630294546667,7.15312891703765,3.381211010224,0.26593811658487,1.04007436911366,2.82928111688356,2.83698264046557,7.19339883343468,2.00169191121407,2.71310802695722,3.29296134712308,1.95441710576241,2.13235169245527,3.95975936466715,0.301439377059586,0.871533458600294,0.99972991182057,0,0,0,0.239624855491583,1.14861935834114,0,0.289562613335158,1.2328579353023,0,0,0.788123040807709,0.215627574859517,0.641715181398742,0.254094624222463,0,0,0.837581326671744,0,0,0,0,3.0672872929785,3.50119364741774,2.44138521329762,0.623912584592421,0,0.630809660135739,0,0,0,0,1.32845119707087,2.21243002250044,0.695068915744663,1.76221041716467,1.02943027143257,0.413536052245775,0.862856803274467,0.74709290462411,0.303127571446259,1.66435439510497,2.41912234663744,0,0,0,0,0,0.160853921143607,0,3.85524234506639,2.48586415438378,2.29956036838666,1.55776328755086,2.78904908303902,6.76812917713084,2.40607764363942,5.70902131402557,1.95184561879831,1.27463817604702,1.31124414959424,3.15839729035188,1.07821471946181,3.92174884588428,5.84556898613043,2.63879072232189,1.13733384070897,3.74206151608334,3.02282282542995,6.16909010761157,4.87703587578935,7.5253466078228,2.54876273045038,4.98645605357235,4.25362033972139,1.09629938322967,1.3071772551245,1.28225062558195,6.56029291399411,3.57916234130733,0.206082023295445,3.93748698718877,3.30037999682352,8.61398306994258,13.0012049207304,0,4.25351160485337,3.080972342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| |||
|short_description=p2@LOC100128881 | |||
}} |
Revision as of 12:07, 11 September 2013
Short description: | p2@LOC100128881 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LOC100128881_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NR_036480, uc002fon.1_5end |
EntrezGene: | LOC100128881 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.37e-23 | 253 |
squamous epithelial cell | 4.83e-09 | 63 |
endo-epithelial cell | 9.95e-09 | 42 |
epithelial cell of lung | 2.43e-07 | 19 |
embryonic cell | 6.29e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelial bud | 2.57e-08 | 37 |
trunk region element | 1.15e-07 | 101 |
epithelial fold | 1.17e-07 | 47 |
respiratory tract epithelium | 2.43e-07 | 19 |
lung epithelium | 2.43e-07 | 19 |
simple squamous epithelium | 4.64e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.19e-20 | 235 |
disease of cellular proliferation | 2.01e-19 | 239 |
organ system cancer | 5.14e-16 | 137 |
cell type cancer | 2.46e-13 | 143 |
hematologic cancer | 2.80e-12 | 51 |
immune system cancer | 2.80e-12 | 51 |
carcinoma | 9.54e-12 | 106 |
leukemia | 3.66e-10 | 39 |
myeloid leukemia | 6.22e-10 | 31 |
squamous cell carcinoma | 2.91e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.