FFCP PHASE1:Hg19::chr17:8066843..8066858,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6844|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12643|TSSclassifier=S|UniProt=|association_with_transcript=5bp_to_ENST00000404970_5end|coexpression_cluster_id=C49|description=CAGE_peak_20_at_VAMP2_5end|id=chr17:8066843..8066858,-|ontology_enrichment_celltype=CL:0002319!3.77e-13!25;CL:0000095!2.04e-10!17;CL:0000123!2.04e-10!17;CL:0000133!1.07e-09!59;CL:0000333!1.09e-09!41;CL:0002322!1.50e-08!5;CL:0000243!1.91e-08!15;CL:0000125!1.91e-08!15;CL:0000030!1.91e-08!15;CL:0000339!1.91e-08!15;CL:0000128!1.25e-07!7;CL:0000126!1.25e-07!7;CL:0000127!1.25e-07!7;CL:0002453!1.25e-07!7;CL:0000221!1.98e-07!71|ontology_enrichment_celltype_v019=CL:0002322;8.93e-54;5!CL:0002321;2.39e-25;15!CL:0000222;1.07e-11;1!CL:0000148;2.78e-10;10!CL:0000147;1.75e-07;14|ontology_enrichment_celltype_v019_2=CL:0002322,9.46e-54,5;CL:0000148,2.83e-10,10;CL:0000541,2.83e-10,10;CL:0000147,1.77e-07,14|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3095!5.26e-08!22;DOID:2994!5.26e-08!22|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.18e-13!82;UBERON:0005743!1.77e-12!86;UBERON:0000073!3.41e-12!94;UBERON:0001016!3.41e-12!94;UBERON:0000955!1.29e-11!69;UBERON:0006238!1.29e-11!69;UBERON:0001893!2.78e-10!34;UBERON:0001049!1.50e-09!57;UBERON:0005068!1.50e-09!57;UBERON:0006241!1.50e-09!57;UBERON:0007135!1.50e-09!57;UBERON:0002791!2.02e-09!33;UBERON:0001869!3.10e-09!32;UBERON:0002020!4.65e-09!34;UBERON:0003528!4.65e-09!34;UBERON:0002616!5.73e-09!59;UBERON:0002346!1.46e-08!90;UBERON:0002780!1.37e-07!41;UBERON:0001890!1.37e-07!41;UBERON:0006240!1.37e-07!41;UBERON:0000924!2.44e-07!173;UBERON:0006601!2.44e-07!173;UBERON:0003080!2.77e-07!42;UBERON:0000956!6.37e-07!25;UBERON:0000203!6.37e-07!25|ontology_enrichment_uberon_v019=UBERON:0000922;1.07e-13;49|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0.313454721478088,0.572471974262113,0.136874425072884,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12289565744301,6.09636934278832,3.95059405756363,2.28054321033815,4.03713361401005,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0.115930404975077,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.317489471460845,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0.206768026122887,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0.241718899183244,0,0,0,0,0,0,0.0770153371044148,0.784349769176855,0,0.211103257785751,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0.145016693914229,0,0,0,0,0.127612712494584,0.10115778085555,0.464845549297286,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.75894634753143,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,2.24330549367694,0,0.245040215981032,0,0.28853842595289,0.284567373393656,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,1.67043704337145,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0.222617410045812,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0.291604613383254,1.04174996959975,0,0.120596438625408,0,0,0.295547618953547,0.438770794307945,0.10893846351899,0,0,0,0,0.0897576444097721,0.54323685961004,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96521128680622,1.11207545051853,0.417687798021821,0.067401132980677,0,0,0.182454789215666,0,0.242780379534093,0.394584402849391,0,0.61214552326098,0,0.300646838828985,0,0,0,0,1.19472429772959,0,0.277349346026277,0,0,0,0.34945333648406,0,0,0.0730893170861856,0,0,0.264768380074501,0.677942222341597,0,0,0.189932387867636,0.391102765469606,0.160317640503067,0,0,0,0.572682980829578,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.209205692624666,0.101998217636322,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.164831716762333,0.337017719270924,0,0,0,0.544813624446302,0.803765742325096,0.825236619583403,0.83088067605837,0,0,0.182248669974074,0,0,0.157363764404994,0,0,0.1919151973194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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6844 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12643 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=5bp_to_ENST00000404970_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_20_at_VAMP2_5end | |||
|id=chr17:8066843..8066858,- | |||
|ontology_enrichment_celltype=CL:0002319!3.77e-13!25;CL:0000095!2.04e-10!17;CL:0000123!2.04e-10!17;CL:0000133!1.07e-09!59;CL:0000333!1.09e-09!41;CL:0002322!1.50e-08!5;CL:0000243!1.91e-08!15;CL:0000125!1.91e-08!15;CL:0000030!1.91e-08!15;CL:0000339!1.91e-08!15;CL:0000128!1.25e-07!7;CL:0000126!1.25e-07!7;CL:0000127!1.25e-07!7;CL:0002453!1.25e-07!7;CL:0000221!1.98e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.93e-54;5!CL:0002321;2.39e-25;15!CL:0000222;1.07e-11;1!CL:0000148;2.78e-10;10!CL:0000147;1.75e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.46e-54,5;CL:0000148,2.83e-10,10;CL:0000541,2.83e-10,10;CL:0000147,1.77e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!5.26e-08!22;DOID:2994!5.26e-08!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.18e-13!82;UBERON:0005743!1.77e-12!86;UBERON:0000073!3.41e-12!94;UBERON:0001016!3.41e-12!94;UBERON:0000955!1.29e-11!69;UBERON:0006238!1.29e-11!69;UBERON:0001893!2.78e-10!34;UBERON:0001049!1.50e-09!57;UBERON:0005068!1.50e-09!57;UBERON:0006241!1.50e-09!57;UBERON:0007135!1.50e-09!57;UBERON:0002791!2.02e-09!33;UBERON:0001869!3.10e-09!32;UBERON:0002020!4.65e-09!34;UBERON:0003528!4.65e-09!34;UBERON:0002616!5.73e-09!59;UBERON:0002346!1.46e-08!90;UBERON:0002780!1.37e-07!41;UBERON:0001890!1.37e-07!41;UBERON:0006240!1.37e-07!41;UBERON:0000924!2.44e-07!173;UBERON:0006601!2.44e-07!173;UBERON:0003080!2.77e-07!42;UBERON:0000956!6.37e-07!25;UBERON:0000203!6.37e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.07e-13;49 | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p20@VAMP2 | |||
}} |
Revision as of 16:38, 11 September 2013
Short description: | p20@VAMP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_VAMP2_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 5bp_to_ENST00000404970_5end |
EntrezGene: | VAMP2 |
HGNC: | 12643 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.46e-54 | 5 |
melanocyte | 2.83e-10 | 10 |
melanoblast | 2.83e-10 | 10 |
pigment cell | 1.77e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.