FFCP PHASE1:Hg19::chr18:3449695..3449712,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7050|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11776|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000343820_5end|coexpression_cluster_id=C65|description=CAGE_peak_9_at_TGIF1_5end|id=chr18:3449695..3449712,+|ontology_enrichment_celltype=CL:0000860!6.15e-17!45;CL:0002057!3.43e-16!42;CL:0000557!2.22e-10!71;CL:0002009!3.86e-10!65;CL:0000839!1.10e-09!70;CL:0002194!2.14e-09!63;CL:0000576!2.14e-09!63;CL:0000040!2.14e-09!63;CL:0000559!2.14e-09!63;CL:0000063!4.07e-09!578;CL:0000766!1.04e-07!76;CL:0002031!7.33e-07!124|ontology_enrichment_celltype_v019=CL:0000860;6.33e-26;33!CL:0002057;6.33e-26;33!CL:0000473;1.18e-17;39!CL:0000234;1.18e-17;39!CL:0000576;9.46e-14;48!CL:0000766;2.65e-07;69|ontology_enrichment_celltype_v019_2=CL:0000860,1.97e-23,42;CL:0002057,1.97e-23,42;CL:0000473,8.77e-20,48;CL:0000234,8.77e-20,48;CL:0002009,3.29e-15,61;CL:0000557,3.82e-15,67;CL:0000839,4.81e-14,66;CL:0002194,5.11e-14,59;CL:0000576,5.11e-14,59;CL:0000040,5.11e-14,59;CL:0000559,5.11e-14,59;CL:0002031,9.53e-13,120;CL:0000766,2.48e-11,72;CL:0002087,1.73e-10,115;CL:0000738,2.14e-09,136|ontology_enrichment_development_v019=CL:0002057;5.89e-19;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.18e-08!102;UBERON:0003061!1.18e-08!102;UBERON:0002371!1.40e-08!80;UBERON:0001474!1.14e-07!86;UBERON:0004765!1.82e-07!101;UBERON:0001434!1.82e-07!101;UBERON:0002193!6.61e-07!112|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.23e-13,76;UBERON:0001474,8.58e-13,82;UBERON:0004765,1.01e-11,90;UBERON:0002390,1.76e-11,98;UBERON:0003061,1.76e-11,98;UBERON:0001434,2.05e-10,100;UBERON:0002193,3.85e-10,108;UBERON:0002405,5.69e-10,93;UBERON:0005631,2.49e-07,14;UBERON:0000158,2.49e-07,14|phase1_expression=1.45342703416445,0.428201047781966,2.11431606143957,0,1.34088328328186,5.23403114460221,0,0.631719873426831,0.261185628199839,0.245733936501509,0,1.74753097704138,1.31883489114227,0.495065411840187,0.662794751455832,0,0.602694528023977,1.46062018077475,0,0.246242116153576,0,0.313454721478088,0.572471974262113,0.547497700291537,0.251085279189606,0,0,0,0.786728553697808,0.383829398097213,0.928896739896456,1.83884244895785,0,1.47901604066715,0,0,0.293600439334847,0,1.00272223735071,1.08505435357926,1.56740831967947,0.647787332037959,0.257575567634187,7.56070841653736,13.9814099164859,13.3421233653299,11.6214518452842,15.2132118568076,14.865905802965,18.1246207162955,15.1134816852169,17.9726494715325,13.4450815487281,11.6187243045089,6.77132432971709,14.4946601447806,13.3724013528344,15.955367395601,15.610278510916,15.7255223267286,14.7047538933779,13.5239033076554,14.7603106640008,12.3605177654481,13.3496249769149,12.4824749432051,8.71951148593805,16.0799145764316,14.0800387973454,15.6375968187684,7.26479403160043,9.94349617166425,13.2914202725171,0.211255286311942,1.06302149982522,1.04829322754188,0.786300418025466,0.150176892841506,0.48217676009124,0.570025487482497,0.39783335439818,0.365328307529268,1.75996244461323,1.09227722252426,0,1.70692089026603,0.400395987036012,1.14950487990897,0,2.86216126360609,2.27685187643779,0,0.764546456250458,0,1.68152568894461,0,0.196709770113833,1.17903228824749,0.411202997999018,0.167186495390678,2.28145586643513,1.89379122293893,0,0.891283655081389,0.883817722424512,1.55073726208535,0.541607727530031,0.128091319725675,0.260118695119756,0.164437904603676,0.552700035571697,0,1.92772532110679,0.267540828089713,0,0.339928028092699,1.14966148080576,2.06176467289578,1.26509846009751,3.82278497188916,3.25541726928209,1.90090408889675,0.752875595388864,1.27986611154418,1.24930726552346,1.65744076430812,3.28451198768419,1.41124720257313,0.802320587350522,1.01377082717959,0,0.670700859703636,0.767175371061182,1.80719576192283,0,0.869079113764942,0.795285947051099,0.973269740605272,0.378139268656271,0.443458794925128,0.175669571386252,0.327447688744282,2.5500670180478,2.22470665670658,0.649094787309367,0.696518949197069,0.531831842075461,0,0,0,0,0,0.347140501607594,0.56530794192401,0.419499436209906,0.275118041940067,0,0,0,0.33472061276467,1.20848795132744,0.760272105718513,0.488124115096339,0.367663080345869,0.81014194788176,0.0892997282840798,1.34717623575702,0,0,0.949265659568129,0.183201743930407,2.63560834872127,0,0.872188104285069,0.496971951695318,0.379891534993739,0.926864265692532,0.860509862246441,0.354668382198357,2.24271040056923,0,0.49333509683432,0.311211035399766,0,0,0.151357427644931,0.576175924479999,0.70296429550139,1.5608003841516,0,0.448346041655403,0.117434498643765,0.161872944368132,0.280901613404497,0.204154171254893,0,0.723280468230358,4.75201142912821,0.989067717114227,0,2.15585442544872,0.505008341862199,0.125118519871964,0.277064115484183,0,0.30648779579902,0.901428353439581,0.226864366320042,1.25572744982203,1.49490172172997,0.423863802319124,0.600182192168805,0.721367704669072,1.80348378031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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7050 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11776 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000343820_5end | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_9_at_TGIF1_5end | |||
|id=chr18:3449695..3449712,+ | |||
|ontology_enrichment_celltype=CL:0000860!6.15e-17!45;CL:0002057!3.43e-16!42;CL:0000557!2.22e-10!71;CL:0002009!3.86e-10!65;CL:0000839!1.10e-09!70;CL:0002194!2.14e-09!63;CL:0000576!2.14e-09!63;CL:0000040!2.14e-09!63;CL:0000559!2.14e-09!63;CL:0000063!4.07e-09!578;CL:0000766!1.04e-07!76;CL:0002031!7.33e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.33e-26;33!CL:0002057;6.33e-26;33!CL:0000473;1.18e-17;39!CL:0000234;1.18e-17;39!CL:0000576;9.46e-14;48!CL:0000766;2.65e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.97e-23,42;CL:0002057,1.97e-23,42;CL:0000473,8.77e-20,48;CL:0000234,8.77e-20,48;CL:0002009,3.29e-15,61;CL:0000557,3.82e-15,67;CL:0000839,4.81e-14,66;CL:0002194,5.11e-14,59;CL:0000576,5.11e-14,59;CL:0000040,5.11e-14,59;CL:0000559,5.11e-14,59;CL:0002031,9.53e-13,120;CL:0000766,2.48e-11,72;CL:0002087,1.73e-10,115;CL:0000738,2.14e-09,136 | |||
|ontology_enrichment_development_v019=CL:0002057;5.89e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.18e-08!102;UBERON:0003061!1.18e-08!102;UBERON:0002371!1.40e-08!80;UBERON:0001474!1.14e-07!86;UBERON:0004765!1.82e-07!101;UBERON:0001434!1.82e-07!101;UBERON:0002193!6.61e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.23e-13,76;UBERON:0001474,8.58e-13,82;UBERON:0004765,1.01e-11,90;UBERON:0002390,1.76e-11,98;UBERON:0003061,1.76e-11,98;UBERON:0001434,2.05e-10,100;UBERON:0002193,3.85e-10,108;UBERON:0002405,5.69e-10,93;UBERON:0005631,2.49e-07,14;UBERON:0000158,2.49e-07,14 | |||
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| |||
|short_description=p9@TGIF1 | |||
}} |
Revision as of 17:23, 11 September 2013
Short description: | p9@TGIF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_TGIF1_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | 0bp_to_ENST00000343820_5end |
EntrezGene: | TGIF1 |
HGNC: | 11776 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.97e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.97e-23 | 42 |
defensive cell | 8.77e-20 | 48 |
phagocyte | 8.77e-20 | 48 |
macrophage dendritic cell progenitor | 3.29e-15 | 61 |
granulocyte monocyte progenitor cell | 3.82e-15 | 67 |
myeloid lineage restricted progenitor cell | 4.81e-14 | 66 |
monopoietic cell | 5.11e-14 | 59 |
monocyte | 5.11e-14 | 59 |
monoblast | 5.11e-14 | 59 |
promonocyte | 5.11e-14 | 59 |
hematopoietic lineage restricted progenitor cell | 9.53e-13 | 120 |
myeloid leukocyte | 2.48e-11 | 72 |
nongranular leukocyte | 1.73e-10 | 115 |
leukocyte | 2.14e-09 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.23e-13 | 76 |
bone element | 8.58e-13 | 82 |
skeletal element | 1.01e-11 | 90 |
hematopoietic system | 1.76e-11 | 98 |
blood island | 1.76e-11 | 98 |
skeletal system | 2.05e-10 | 100 |
hemolymphoid system | 3.85e-10 | 108 |
immune system | 5.69e-10 | 93 |
extraembryonic membrane | 2.49e-07 | 14 |
membranous layer | 2.49e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.