FFCP PHASE1:Hg19::chr19:13227207..13227221,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55621|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25980|TSSclassifier=S|UniProt=Q9NXH9|association_with_transcript=241bp_to_ENST00000221504,ENST00000437766,NM_001142554,NM_017722,uc002mwj.2,uc002mwk.2_5end|description=CAGE_peak_5_at_TRMT1_5end|id=chr19:13227207..13227221,-|ontology_enrichment_celltype=CL:0000548!1.30e-11!679;CL:0000004!1.30e-11!679;CL:0000255!1.30e-11!679;CL:0000012!1.30e-11!682;CL:0002321!4.36e-09!248;CL:0000220!1.37e-08!246;CL:0000144!5.52e-08!625;CL:0000003!6.87e-08!722|ontology_enrichment_celltype_v019=CL:1000746;1.92e-07;7!CL:1000612;1.92e-07;7!CL:0002681;2.54e-07;12!CL:0002584;2.54e-07;12|ontology_enrichment_celltype_v019_2=CL:1000746,2.06e-07,7;CL:1000612,2.06e-07,7;CL:0002681,2.22e-07,12;CL:0002584,2.22e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;4.22e-08;3!DOID:127;4.22e-08;3|ontology_enrichment_disease_v019_2=DOID:0060084,3.80e-08,3;DOID:127,3.80e-08,3|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000353;9.21e-09;15!UBERON:0002113;1.27e-07;24!UBERON:0011143;1.27e-07;24!UBERON:0000074;1.92e-07;7!UBERON:0001229;1.92e-07;7!UBERON:0001225;2.54e-07;12!UBERON:0008987;2.54e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000353,7.66e-09,15;UBERON:0010532,2.06e-07,7;UBERON:0000074,2.06e-07,7;UBERON:0001229,2.06e-07,7;UBERON:0001230,2.06e-07,7;UBERON:0003220,2.06e-07,7;UBERON:0005749,2.06e-07,7;UBERON:0004199,2.06e-07,7;UBERON:0004209,2.06e-07,7;UBERON:0004198,2.06e-07,7;UBERON:0001225,2.22e-07,12;UBERON:0008987,2.22e-07,12;UBERON:0002113,4.62e-07,26;UBERON:0003918,4.62e-07,26;UBERON:0011143,4.62e-07,26;UBERON:0005095,4.62e-07,26;UBERON:0007687,4.62e-07,26|phase1_expression=0,0,0.281908808191942,0,0,0,0,0.631719873426831,0,0,1.39560233594486,0,0,0.123766352960047,0.331397375727916,0,0.602694528023977,0.730310090387373,0.487932798790507,0.492484232307152,0.204000691244253,0,0.286235987131057,0,0,0.229240217243854,0.246301768349837,0.0787107813136792,0,0,0,0.919421224478927,0.6024118375565,0.739508020333575,0.232401601740905,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0.167186495390678,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0.289693037921647,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0,0.728590576585084,0.370784442784429,0,0.174129737299267,0,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.275118041940067,0.626984899610432,0,0.35576626268671,0,0,0.760272105718513,0.24406205754817,0.367663080345869,0.81014194788176,0.357198913136319,0.44905874525234,0,0,0.949265659568129,0.366403487860815,0,0,0,0,0.633152558322899,0.926864265692532,0.573673241497627,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0,0.624320153660641,1.71141546463335,0.597794722207204,0.117434498643765,0.161872944368132,0.280901613404497,0,0,0,0,0,0,0.718618141816238,0,0,0.277064115484183,0,0,0,0.113432183160021,0.538168907066586,0,0,0.900273288253207,0,0.257640540045629,0,0.675105328965065,0.194874010322397,0.252433774244115,0.0920498986422993,0,0.355009592516614,0,0.508681776931463,0.57978255948989,0.818238361772504,0,0.243947412259191,0.927708378250397,1.04574548582567,0.621966330092223,1.00928340350251,0.72995471815166,0,0,0,0,0,0.118306800039844,1.01150814046861,1.20505514941741,0.772057809126758,0.871517776369625,1.18635309555548,0.404493924480493,0.392442930250692,0,0,1.40241773803446,0.8231480226628,0,0,0,0,0,0.122988438543114,0,0.548751427043128,0,0.201057944823262,0.0925884451585296,0,0,1.44331342025273,0.231860809950154,0.352226082707465,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.708875486211932,0,0,0.383382679165211,0,0.088048434013226,0,0.144119953416961,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,0.43596006883328,0.4400297149257,0.258543431515556,0,0,0.26593811658487,1.04007436911366,0,1.41849132023278,0.532844358032199,0,0,0,0,0,0.791951872933429,0.602878754119172,0.871533458600294,0.299918973546171,0,0,0,0.239624855491583,0,0,0.579125226670317,0.61642896765115,0.179060963239896,0.224170287987055,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0.178428988797162,0,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0,0.512556597022804,0,0,0,0.462629081407967,0.355123450626254,0.410635780069046,0,0.348631135379878,0.483437798366489,0.200506470303285,0.368323955743585,0.114814448164607,0.364182336013434,0.262248829918848,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.211103257785751,0,0.680374821106063,0.431831832204279,1.54227252690289,0.541892875087706,1.00337954770971,0.254876273045038,1.66215201785745,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55621 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25980 | |||
|TSSclassifier=S | |||
|UniProt=Q9NXH9 | |||
|association_with_transcript=241bp_to_ENST00000221504,ENST00000437766,NM_001142554,NM_017722,uc002mwj.2,uc002mwk.2_5end | |||
|description=CAGE_peak_5_at_TRMT1_5end | |||
|id=chr19:13227207..13227221,- | |||
|ontology_enrichment_celltype=CL:0000548!1.30e-11!679;CL:0000004!1.30e-11!679;CL:0000255!1.30e-11!679;CL:0000012!1.30e-11!682;CL:0002321!4.36e-09!248;CL:0000220!1.37e-08!246;CL:0000144!5.52e-08!625;CL:0000003!6.87e-08!722 | |||
|ontology_enrichment_celltype_v019=CL:1000746;1.92e-07;7!CL:1000612;1.92e-07;7!CL:0002681;2.54e-07;12!CL:0002584;2.54e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000746,2.06e-07,7;CL:1000612,2.06e-07,7;CL:0002681,2.22e-07,12;CL:0002584,2.22e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;4.22e-08;3!DOID:127;4.22e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.80e-08,3;DOID:127,3.80e-08,3 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;9.21e-09;15!UBERON:0002113;1.27e-07;24!UBERON:0011143;1.27e-07;24!UBERON:0000074;1.92e-07;7!UBERON:0001229;1.92e-07;7!UBERON:0001225;2.54e-07;12!UBERON:0008987;2.54e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,7.66e-09,15;UBERON:0010532,2.06e-07,7;UBERON:0000074,2.06e-07,7;UBERON:0001229,2.06e-07,7;UBERON:0001230,2.06e-07,7;UBERON:0003220,2.06e-07,7;UBERON:0005749,2.06e-07,7;UBERON:0004199,2.06e-07,7;UBERON:0004209,2.06e-07,7;UBERON:0004198,2.06e-07,7;UBERON:0001225,2.22e-07,12;UBERON:0008987,2.22e-07,12;UBERON:0002113,4.62e-07,26;UBERON:0003918,4.62e-07,26;UBERON:0011143,4.62e-07,26;UBERON:0005095,4.62e-07,26;UBERON:0007687,4.62e-07,26 | |||
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| |||
|short_description=p5@TRMT1 | |||
}} |
Revision as of 18:54, 11 September 2013
Short description: | p5@TRMT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_TRMT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 241bp_to_ENST00000221504, ENST00000437766, NM_001142554, NM_017722, uc002mwj.2, uc002mwk.2_5end |
EntrezGene: | TRMT1 |
HGNC: | 25980 |
UniProt: | Q9NXH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular cell | 2.06e-07 | 7 |
kidney corpuscule cell | 2.06e-07 | 7 |
kidney cortical cell | 2.22e-07 | 12 |
renal cortical epithelial cell | 2.22e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 7.66e-09 | 15 |
primitive nephron | 2.06e-07 | 7 |
renal glomerulus | 2.06e-07 | 7 |
renal corpuscle | 2.06e-07 | 7 |
glomerular capsule | 2.06e-07 | 7 |
metanephric mesenchyme | 2.06e-07 | 7 |
glomerular tuft | 2.06e-07 | 7 |
S-shaped body | 2.06e-07 | 7 |
renal vesicle | 2.06e-07 | 7 |
comma-shaped body | 2.06e-07 | 7 |
cortex of kidney | 2.22e-07 | 12 |
renal parenchyma | 2.22e-07 | 12 |
kidney | 4.62e-07 | 26 |
kidney mesenchyme | 4.62e-07 | 26 |
upper urinary tract | 4.62e-07 | 26 |
kidney rudiment | 4.62e-07 | 26 |
kidney field | 4.62e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.80e-08 | 3 |
leiomyoma | 3.80e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.