FFCP PHASE1:Hg19::chr1:45140081..45140169,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79639|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26186|TSSclassifier=S|UniProt=Q5TDE2,Q5TDE5,Q5TDE6,Q5TDE4,Q6P2H8|association_with_transcript=0bp_to_ENST00000372235,ENST00000372242,ENST00000372243,ENST00000372244,ENST00000468117,ENST00000476724,ENST00000495630,NM_024587,uc001cmb.1,uc001cmc.2,uc001cmd.2_5end|description=CAGE_peak_1_at_TMEM53_5end|id=chr1:45140081..45140169,-|ontology_enrichment_celltype=CL:0000325!9.47e-08!39;CL:0000066!2.40e-07!254|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,3.56e-07,253|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!5.81e-14!365;UBERON:0000481!6.48e-13!347;UBERON:0000466!4.17e-12!126;UBERON:0005177!5.92e-12!107;UBERON:0000119!1.19e-11!312;UBERON:0000483!3.86e-11!309;UBERON:0009569!3.52e-10!113;UBERON:0002100!7.85e-10!216;UBERON:0000062!1.64e-09!511;UBERON:0000064!2.37e-09!219;UBERON:0002417!2.45e-09!61;UBERON:0000916!2.45e-09!61;UBERON:0005172!4.70e-09!55;UBERON:0005173!4.70e-09!55;UBERON:0000922!1.02e-08!612;UBERON:0000923!2.14e-08!604;UBERON:0005291!2.14e-08!604;UBERON:0006598!2.14e-08!604;UBERON:0002532!2.14e-08!604;UBERON:0002050!2.72e-08!605;UBERON:0005423!2.72e-08!605;UBERON:0005256!2.98e-08!143;UBERON:0000464!3.77e-08!104;UBERON:0000468!7.07e-08!659;UBERON:0000480!2.89e-07!626;UBERON:0000467!2.94e-07!625;UBERON:0004121!4.89e-07!169|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000119,4.88e-12,309;UBERON:0000483,1.62e-11,306;UBERON:0005177,3.51e-11,101;UBERON:0009569,7.51e-10,112;UBERON:0002417,4.52e-09,60;UBERON:0000916,4.52e-09,60;UBERON:0005172,8.72e-09,54;UBERON:0005173,8.72e-09,54;UBERON:0002100,1.17e-08,199;UBERON:0000922,5.97e-08,592;UBERON:0005423,6.14e-08,581;UBERON:0003104,9.03e-08,160;UBERON:0009142,9.03e-08,160;UBERON:0004121,7.94e-07,171;UBERON:0000924,7.94e-07,171;UBERON:0006601,7.94e-07,171|phase1_expression=9.81063248061006,20.7677508174254,11.9811243481575,9.00659685178174,15.1966772105278,2.61701557230111,53.1929744153452,19.5833160762318,50.147640614369,6.88055022204225,25.1208420470074,19.6597234917155,24.0027950187893,15.965859531846,10.6047160232933,2.01697543935533,1.20538905604795,5.84248072309899,3.90346239032406,9.72656358806625,11.4240387096782,9.09018692286455,15.4567433050771,12.5924471067053,13.9352329950231,8.09982100928283,8.12795835554463,6.13944094246698,1.96682138424452,1.53531759238885,1.23852898652861,11.0330546937471,9.638589400904,10.7228662948368,4.8029664359787,5.54460006700944,6.45920966536664,0.553995408531877,3.20871115952227,1.30206522429511,15.6740831967947,17.8141516310439,15.196958490417,1.01778767145695,0,0.970336244751265,1.39457422143411,0.411167888021826,0.929119112685311,2.01384674625505,1.7931249457037,2.60130452877444,1.37898272294647,0,0,0.941211697713023,0,0.674170453335254,0.306083892370903,0.320929027076094,0.639337125799041,3.62836430205388,2.19410023383795,2.13112375266347,0.290209238628584,0.56738522469114,0.622822248995575,1.50749199154046,2.08593167368081,1.52032191293582,0.605399502633369,0,0,4.64761629886272,4.67729459923096,5.45112478321777,2.69588714751588,2.70318407114711,1.44653028027372,7.12531859353121,7.16100037916724,6.94123784305609,3.51992488922645,3.82297027883492,0,2.56038133539904,5.60554381850417,1.72425731986345,1.32208974556972,0.954053754535364,3.98449078376614,4.11066032559657,4.20500550937752,2.64342657158052,1.12101712596307,4.74091352595139,1.37696839079683,0.786021525498329,1.43921049299656,3.34372990781356,3.58514493296949,3.31413464014313,3.89653456815823,3.7879555340959,2.06224135232386,2.43687284041983,2.16643091012012,3.84273959177025,4.03183977435623,3.28875809207352,2.21080014228679,2.89803085735052,1.92772532110679,1.60524496853828,3.1360657141493,2.60611488204402,3.44898444241729,2.40539211837841,1.77113784413652,2.22995790026868,0.651083453856419,0.950452044448374,2.25862678616659,2.68771883424279,4.99722906209383,3.31488152861624,3.28451198768419,1.00803371612366,2.40696176205157,1.30341963494519,14.6284119788377,11.4019146149618,7.1603034632377,3.97583067623023,4.51204119572301,5.21447468258965,8.74814541756209,6.8128881842369,12.9512699514773,10.6430110782031,13.0873830682758,16.6343425882095,17.486173838042,6.3033355273353,9.7364218096405,10.9701734498538,12.0991744072167,14.0709468340152,15.4438625910635,9.28643753323912,3.18019851786728,3.4409383804245,3.81854551768354,2.82653970962005,5.45349267072878,6.87795104850169,5.43386912995707,6.46041897923322,9.24992282985447,4.35136796594071,5.63961043952806,6.84244895146661,9.27435818683044,1.83831540172934,6.48113558305408,4.55428614248807,4.04152870727106,6.19363142658272,4.5994991239765,4.74632829784064,3.29763139074733,0,0,20.9325145028416,4.47274756525787,2.65924074495618,3.83986624358335,7.45775213946916,6.73869926176878,3.36406560085384,4.26995982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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79639 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26186 | |||
|TSSclassifier=S | |||
|UniProt=Q5TDE2,Q5TDE5,Q5TDE6,Q5TDE4,Q6P2H8 | |||
|association_with_transcript=0bp_to_ENST00000372235,ENST00000372242,ENST00000372243,ENST00000372244,ENST00000468117,ENST00000476724,ENST00000495630,NM_024587,uc001cmb.1,uc001cmc.2,uc001cmd.2_5end | |||
|description=CAGE_peak_1_at_TMEM53_5end | |||
|id=chr1:45140081..45140169,- | |||
|ontology_enrichment_celltype=CL:0000325!9.47e-08!39;CL:0000066!2.40e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.56e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.81e-14!365;UBERON:0000481!6.48e-13!347;UBERON:0000466!4.17e-12!126;UBERON:0005177!5.92e-12!107;UBERON:0000119!1.19e-11!312;UBERON:0000483!3.86e-11!309;UBERON:0009569!3.52e-10!113;UBERON:0002100!7.85e-10!216;UBERON:0000062!1.64e-09!511;UBERON:0000064!2.37e-09!219;UBERON:0002417!2.45e-09!61;UBERON:0000916!2.45e-09!61;UBERON:0005172!4.70e-09!55;UBERON:0005173!4.70e-09!55;UBERON:0000922!1.02e-08!612;UBERON:0000923!2.14e-08!604;UBERON:0005291!2.14e-08!604;UBERON:0006598!2.14e-08!604;UBERON:0002532!2.14e-08!604;UBERON:0002050!2.72e-08!605;UBERON:0005423!2.72e-08!605;UBERON:0005256!2.98e-08!143;UBERON:0000464!3.77e-08!104;UBERON:0000468!7.07e-08!659;UBERON:0000480!2.89e-07!626;UBERON:0000467!2.94e-07!625;UBERON:0004121!4.89e-07!169 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,4.88e-12,309;UBERON:0000483,1.62e-11,306;UBERON:0005177,3.51e-11,101;UBERON:0009569,7.51e-10,112;UBERON:0002417,4.52e-09,60;UBERON:0000916,4.52e-09,60;UBERON:0005172,8.72e-09,54;UBERON:0005173,8.72e-09,54;UBERON:0002100,1.17e-08,199;UBERON:0000922,5.97e-08,592;UBERON:0005423,6.14e-08,581;UBERON:0003104,9.03e-08,160;UBERON:0009142,9.03e-08,160;UBERON:0004121,7.94e-07,171;UBERON:0000924,7.94e-07,171;UBERON:0006601,7.94e-07,171 | |||
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| |||
|short_description=p1@TMEM53 | |||
}} |
Revision as of 05:53, 12 September 2013
Short description: | p1@TMEM53 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMEM53_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372235, ENST00000372242, ENST00000372243, ENST00000372244, ENST00000468117, ENST00000476724, ENST00000495630, NM_024587, uc001cmb.1, uc001cmc.2, uc001cmd.2_5end |
EntrezGene: | TMEM53 |
HGNC: | 26186 |
UniProt: | Q5TDE2Q5TDE5Q5TDE6Q5TDE4Q6P2H8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.56e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
cell layer | 4.88e-12 | 309 |
epithelium | 1.62e-11 | 306 |
trunk region element | 3.51e-11 | 101 |
subdivision of trunk | 7.51e-10 | 112 |
abdominal segment of trunk | 4.52e-09 | 60 |
abdomen | 4.52e-09 | 60 |
abdomen element | 8.72e-09 | 54 |
abdominal segment element | 8.72e-09 | 54 |
trunk | 1.17e-08 | 199 |
embryo | 5.97e-08 | 592 |
developing anatomical structure | 6.14e-08 | 581 |
mesenchyme | 9.03e-08 | 160 |
entire embryonic mesenchyme | 9.03e-08 | 160 |
ectoderm-derived structure | 7.94e-07 | 171 |
ectoderm | 7.94e-07 | 171 |
presumptive ectoderm | 7.94e-07 | 171 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.