FFCP PHASE1:Hg19::chr1:68151730..68151791,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1647|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4095|TSSclassifier=W|UniProt=|association_with_transcript=371bp_to_ENST00000484245_5end|description=CAGE_peak_2_at_GADD45A_5end|id=chr1:68151730..68151791,+|ontology_enrichment_celltype=CL:0000003!1.34e-15!722;CL:0000012!1.31e-14!682;CL:0000144!5.41e-14!625;CL:0000548!1.64e-13!679;CL:0000004!1.64e-13!679;CL:0000255!1.64e-13!679;CL:0002371!9.49e-12!591;CL:0000063!2.11e-11!578;CL:0000048!3.53e-09!430;CL:0000723!7.58e-09!436;CL:0000034!8.07e-09!444;CL:0000134!2.55e-07!358|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000048,2.41e-11,427;CL:0000034,5.73e-11,441;CL:0000723,6.57e-11,433;CL:0000134,2.31e-10,354;CL:0002320,2.58e-09,361;CL:0000219,3.96e-08,386;CL:0000766,2.25e-07,72|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.78e-08,371|phase1_expression=1.09007027562334,1.2846031433459,1.12763523276777,2.00146596706261,0.446961094427288,0.872338524100369,0,1.89515962028049,0.522371256399677,0.491467873003018,1.39560233594486,2.18441372130172,1.58260186937072,0.618831764800233,0.662794751455832,2.6893005858071,1.20538905604795,2.19093027116212,1.46379839637152,0,0.408001382488506,0.313454721478088,0,0.136874425072884,0,0.534893840235659,0.821005894499457,1.18066171970519,3.93364276848904,1.91914699048606,4.4896675761662,0,0.30120591877825,2.58827807116751,0.154934401160603,0.568676929949686,1.17440175733939,21.0518255242113,14.0381113229099,11.2845652772243,0.671746422719773,0,0,0.145398238779565,0.377875943688809,0.485168122375632,0.929716147622738,2.05583944010913,3.09706370895104,0.575384784644301,0.768482119587302,2.60130452877444,1.72372840368309,1.93645405075148,6.77132432971709,0.941211697713023,3.0019676506363,1.12361742222542,2.14258724659632,1.92557416245656,5.11469700639233,0,0.997318288108159,0.426224750532694,5.22376629531451,9.64554881974938,8.09668923694247,0,2.60741459210101,0.65156653411535,4.23779651843358,6.2607198117886,12.0255707227536,1.05627643155971,0.850417199860174,0.628975936525128,1.23561494261145,2.70318407114711,2.25015821375912,0.855038231223746,1.19350006319454,0.547992461293902,0,0,0,0,0,0,0,0,1.1384259382189,1.17447437874188,0.382273228125229,6.60856642895129,5.60508562981536,1.05353633910031,3.540775862049,1.57204305099666,2.2616164889946,6.01871383406441,0.32592226663359,1.4203434172042,0,5.9047542149142,6.18672405697158,3.1014745241707,2.70803863765016,7.04502258491213,7.93362020115257,1.15106533222573,1.10540007114339,1.44901542867526,0.444859689486181,0.535081656179426,1.04535523804977,1.92625882585863,1.53288197440768,0.68725489096526,1.01207876807801,0,0,0,0,0,0,0,0,2.82249440514625,2.67440195783507,1.59306844271079,0,0,0.639312809217652,1.0843174571537,0.50133791063589,1.44846518960824,2.3858578411533,0,0.756278537312543,0.221729397462564,0.87834785693126,0.392937226493138,1.82147644146271,1.11235332835329,1.9472843619281,1.56716763569341,2.12732736830184,0.715471872916026,1.71598473234038,0.371457501329565,0.39752481473341,1.72046919021225,1.04142150482278,1.13061588384802,1.25849830862972,1.10047216776027,0.417989933073621,1.8089173141853,0.35576626268671,0.66944122552934,0.805658634218294,0,1.22031028774085,0.367663080345869,0.81014194788176,0.892997282840798,0.22452937262617,0.563057402416611,0,0,0.732806975721629,7.9068250461638,11.6334079244498,1.74437620857014,0.993943903390637,0.633152558322899,4.8991396900891,0.573673241497627,0.354668382198357,1.68203280042692,0,0.98667019366864,1.24484414159907,0.942974704487816,0.163461903113459,0.454072282934794,0.576175924479999,6.7953215231801,0.312160076830321,0.570471821544449,0.448346041655403,1.996386476944,1.45685649931318,0.702254033511242,0,1.47401180774122,0.723280468230358,0,0.989067717114227,5.46096817162816,4.31170885089743,0.336672227908132,0.250237039743928,0.554128230968366,0.438977620880838,1.22595118319608,0.600952235626387,0.794025282120147,1.25572744982203,2.56268866582281,0.847727604638247,1.20036438433761,1.13357782162283,0.515281080091258,0.930584281657949,1.18143432568886,1.55899208257918,1.26216887122057,1.38074847963449,1.61646056818812,2.84007674013291,1.30977727695932,1.18692414617341,3.28543450377605,1.63647672354501,2.58124135850103,0.365921118388786,0,0.232387885739037,0.725627385107593,0.252320850875628,0.36497735907583,0,0.643240938192885,1.38134921352481,0.928735856063958,0,0.709840800239063,0.842923450390509,0.482022059766964,0.772057809126758,0.217879444092406,0.474541238222193,0.808987848960987,0.588664395376038,0.38474715694639,0.738155454624648,2.80483547606892,2.057870056657,0,1.26755034821831,0.982827216677626,0,0,0.122988438543114,0.514703430895577,0.548751427043128,3.37205259772859,0.502644862058154,0.833296006426766,4.88712457965487,3.119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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1647 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4095 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=371bp_to_ENST00000484245_5end | |||
|description=CAGE_peak_2_at_GADD45A_5end | |||
|id=chr1:68151730..68151791,+ | |||
|ontology_enrichment_celltype=CL:0000003!1.34e-15!722;CL:0000012!1.31e-14!682;CL:0000144!5.41e-14!625;CL:0000548!1.64e-13!679;CL:0000004!1.64e-13!679;CL:0000255!1.64e-13!679;CL:0002371!9.49e-12!591;CL:0000063!2.11e-11!578;CL:0000048!3.53e-09!430;CL:0000723!7.58e-09!436;CL:0000034!8.07e-09!444;CL:0000134!2.55e-07!358 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.41e-11,427;CL:0000034,5.73e-11,441;CL:0000723,6.57e-11,433;CL:0000134,2.31e-10,354;CL:0002320,2.58e-09,361;CL:0000219,3.96e-08,386;CL:0000766,2.25e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.78e-08,371 | |||
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| |||
|short_description=p2@GADD45A | |||
}} |
Revision as of 06:36, 12 September 2013
Short description: | p2@GADD45A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_GADD45A_5end |
Coexpression cluster: | NA |
Association with transcript: | 371bp_to_ENST00000484245_5end |
EntrezGene: | GADD45A |
HGNC: | 4095 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.41e-11 | 427 |
stem cell | 5.73e-11 | 441 |
somatic stem cell | 6.57e-11 | 433 |
mesenchymal cell | 2.31e-10 | 354 |
connective tissue cell | 2.58e-09 | 361 |
motile cell | 3.96e-08 | 386 |
myeloid leukocyte | 2.25e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.78e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.