FFCP PHASE1:Hg19::chr20:30153874..30153891,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=81502|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16435|TSSclassifier=S|UniProt=|association_with_transcript=14bp_to_ENST00000493364_5end|description=CAGE_peak_8_at_HM13_5end|id=chr20:30153874..30153891,+|ontology_enrichment_celltype=CL:0002076!3.84e-25!43;CL:0000066!1.40e-23!254;CL:0000223!2.25e-20!59;CL:0002368!3.10e-19!13;CL:0002251!5.44e-11!21;CL:0002202!1.19e-10!9;CL:0002632!1.19e-10!9;CL:0000076!1.46e-09!62;CL:0002328!5.43e-09!3;CL:0002621!1.84e-08!3|ontology_enrichment_celltype_v019=CL:0002231;7.86e-11;3!CL:0002076;1.01e-10;42!CL:0002368;6.64e-09;13!CL:0000244;4.30e-08;4!CL:0000731;4.30e-08;4!CL:0002202;1.19e-07;9!CL:0002632;1.19e-07;9|ontology_enrichment_celltype_v019_2=CL:0002076,1.59e-15,42;CL:0000076,9.61e-12,63;CL:0002231,6.79e-11,3;CL:0000066,8.53e-11,253;CL:0000223,8.77e-11,58;CL:0002368,5.80e-09,13;CL:0000244,4.23e-08,4;CL:0000731,4.23e-08,4;CL:0002202,1.21e-07,9;CL:0002632,1.21e-07,9|ontology_enrichment_development_v019=UBERON:0008814;5.70e-15;2!UBERON:0010056;5.70e-15;2!UBERON:0000358;1.14e-08;1!CL:0000223;2.39e-08;58!UBERON:0009143;2.46e-08;1|ontology_enrichment_disease=DOID:1749!3.74e-22!14;DOID:305!1.16e-14!106;DOID:0050687!1.55e-10!143|ontology_enrichment_disease_v019=DOID:1749;3.06e-40;14!DOID:3151;1.14e-08;1!DOID:3149;1.14e-08;1!DOID:4362;9.70e-07;5|ontology_enrichment_disease_v019_2=DOID:1749,6.43e-40,14;DOID:305,5.73e-09,106;DOID:3151,1.37e-08,1;DOID:3149,1.37e-08,1|ontology_enrichment_uberon_v019=UBERON:0003343;4.73e-17;4!UBERON:0004785;4.73e-17;4!UBERON:0000974;1.50e-11;6!UBERON:0001723;2.74e-10;3!UBERON:0001033;2.74e-10;3!UBERON:0000997;6.50e-09;1!UBERON:0005056;6.50e-09;1!UBERON:0004176;6.50e-09;1|ontology_enrichment_uberon_v019_2=UBERON:0003343,4.74e-17,4;UBERON:0004785,4.74e-17,4;UBERON:0001723,2.49e-10,3;UBERON:0001033,2.49e-10,3;UBERON:0010056,2.49e-10,3;UBERON:0000997,6.50e-09,1;UBERON:0005056,6.50e-09,1;UBERON:0004119,3.63e-07,160;UBERON:0000925,3.63e-07,160;UBERON:0006595,3.63e-07,160;UBERON:0000974,4.10e-07,10;UBERON:0000161,8.49e-07,36|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.301586917234893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,1.79117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40607764363942,3.95948252424354,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98341898433174,0.960950336825531,0.127612712494584,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,2.68120910214315,0,0,0,1.68471475667626,2.21715076768338,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0.895105873378046,0,0.0986434056369336,0,0,0,0,0,0,0,0,1.2517279311405,1.01701460117107,0.236387681767936,0,0,0,0,0,0,0,0,0,0,5.15867853830832,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0.971121518136371,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21367308881824,1.21882889212564,0,0,0.0967563312890851,0,0,1.35784623083787,0,0,0,0,0,0.195551382734803,0.240476460754601,0.213452994739353,0.799238438328521,0,0,0,0,0,3.06402245001834,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0126081255956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11444506695002,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23520578864389,0,0,0,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4351701475359,0.11796972334774,3.11828617486854,1.38630799380406,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,1.91643641459393,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,7.85637329864893,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0,0.852935927603924,0,0,0.0620747142958579,0,0,0,1.74173398317569,0,0.404112318087525,0.430333232356058,0,0.89543595472072,0,0,0,2.34640942403454,0,0.406896178315738,0,0,0|short_description=p8@HM13}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=81502 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16435 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=14bp_to_ENST00000493364_5end | |||
|description=CAGE_peak_8_at_HM13_5end | |||
|id=chr20:30153874..30153891,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.84e-25!43;CL:0000066!1.40e-23!254;CL:0000223!2.25e-20!59;CL:0002368!3.10e-19!13;CL:0002251!5.44e-11!21;CL:0002202!1.19e-10!9;CL:0002632!1.19e-10!9;CL:0000076!1.46e-09!62;CL:0002328!5.43e-09!3;CL:0002621!1.84e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002231;7.86e-11;3!CL:0002076;1.01e-10;42!CL:0002368;6.64e-09;13!CL:0000244;4.30e-08;4!CL:0000731;4.30e-08;4!CL:0002202;1.19e-07;9!CL:0002632;1.19e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.59e-15,42;CL:0000076,9.61e-12,63;CL:0002231,6.79e-11,3;CL:0000066,8.53e-11,253;CL:0000223,8.77e-11,58;CL:0002368,5.80e-09,13;CL:0000244,4.23e-08,4;CL:0000731,4.23e-08,4;CL:0002202,1.21e-07,9;CL:0002632,1.21e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008814;5.70e-15;2!UBERON:0010056;5.70e-15;2!UBERON:0000358;1.14e-08;1!CL:0000223;2.39e-08;58!UBERON:0009143;2.46e-08;1 | |||
|ontology_enrichment_disease=DOID:1749!3.74e-22!14;DOID:305!1.16e-14!106;DOID:0050687!1.55e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.06e-40;14!DOID:3151;1.14e-08;1!DOID:3149;1.14e-08;1!DOID:4362;9.70e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.43e-40,14;DOID:305,5.73e-09,106;DOID:3151,1.37e-08,1;DOID:3149,1.37e-08,1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;4.73e-17;4!UBERON:0004785;4.73e-17;4!UBERON:0000974;1.50e-11;6!UBERON:0001723;2.74e-10;3!UBERON:0001033;2.74e-10;3!UBERON:0000997;6.50e-09;1!UBERON:0005056;6.50e-09;1!UBERON:0004176;6.50e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,4.74e-17,4;UBERON:0004785,4.74e-17,4;UBERON:0001723,2.49e-10,3;UBERON:0001033,2.49e-10,3;UBERON:0010056,2.49e-10,3;UBERON:0000997,6.50e-09,1;UBERON:0005056,6.50e-09,1;UBERON:0004119,3.63e-07,160;UBERON:0000925,3.63e-07,160;UBERON:0006595,3.63e-07,160;UBERON:0000974,4.10e-07,10;UBERON:0000161,8.49e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.6024118375565,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.272746120590835,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.301586917234893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283550194484773,1.79117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40607764363942,3.95948252424354,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98341898433174,0.960950336825531,0.127612712494584,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,2.68120910214315,0,0,0,1.68471475667626,2.21715076768338,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0.895105873378046,0,0.0986434056369336,0,0,0,0,0,0,0,0,1.2517279311405,1.01701460117107,0.236387681767936,0,0,0,0,0,0,0,0,0,0,5.15867853830832,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0.978323094660449,0.971121518136371,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21367308881824,1.21882889212564,0,0,0.0967563312890851,0,0,1.35784623083787,0,0,0,0,0,0.195551382734803,0.240476460754601,0.213452994739353,0.799238438328521,0,0,0,0,0,3.06402245001834,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0126081255956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11444506695002,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23520578864389,0,0,0,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4351701475359,0.11796972334774,3.11828617486854,1.38630799380406,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,1.91643641459393,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,7.85637329864893,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,0,0,0,0,0.852935927603924,0,0,0.0620747142958579,0,0,0,1.74173398317569,0,0.404112318087525,0.430333232356058,0,0.89543595472072,0,0,0,2.34640942403454,0,0.406896178315738,0,0,0 | |||
|short_description=p8@HM13 | |||
}} |
Revision as of 07:56, 12 September 2013
Short description: | p8@HM13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_HM13_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_ENST00000493364_5end |
EntrezGene: | HM13 |
HGNC: | 16435 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.59e-15 | 42 |
squamous epithelial cell | 9.61e-12 | 63 |
epithelial cell of prostate | 6.79e-11 | 3 |
epithelial cell | 8.53e-11 | 253 |
endodermal cell | 8.77e-11 | 58 |
respiratory epithelial cell | 5.80e-09 | 13 |
transitional epithelial cell | 4.23e-08 | 4 |
urothelial cell | 4.23e-08 | 4 |
epithelial cell of tracheobronchial tree | 1.21e-07 | 9 |
epithelial cell of lower respiratory tract | 1.21e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 4.74e-17 | 4 |
respiratory system mucosa | 4.74e-17 | 4 |
tongue | 2.49e-10 | 3 |
gustatory system | 2.49e-10 | 3 |
future tongue | 2.49e-10 | 3 |
mammalian vulva | 6.50e-09 | 1 |
external female genitalia | 6.50e-09 | 1 |
endoderm-derived structure | 3.63e-07 | 160 |
endoderm | 3.63e-07 | 160 |
presumptive endoderm | 3.63e-07 | 160 |
neck | 4.10e-07 | 10 |
orifice | 8.49e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.43e-40 | 14 |
carcinoma | 5.73e-09 | 106 |
skin squamous cell carcinoma | 1.37e-08 | 1 |
keratoacanthoma | 1.37e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.