FFCP PHASE1:Hg19::chr2:128408404..128408428,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16084|TSSclassifier=W|UniProt=Q7Z4I2,F8WEF3|association_with_transcript=-291bp_to_ENST00000409254,ENST00000413578_5end|coexpression_cluster_id=C80|description=CAGE_peak_34_at_LIMS2_5end|id=chr2:128408404..128408428,-|ontology_enrichment_celltype=CL:0001014!1.01e-16!2;CL:0001016!1.01e-16!2;CL:0002195!2.95e-16!2;CL:0002571!2.95e-16!2;CL:0002580!3.27e-11!3;CL:0002615!4.66e-11!3;CL:0000453!3.34e-07!5|ontology_enrichment_celltype_v019=CL:0001014;4.61e-131;2!CL:0001016;4.61e-131;2!CL:0000453;2.19e-53;5!CL:0000840;9.76e-45;5!CL:0000990;2.66e-30;8!CL:0000451;4.86e-25;10!CL:0002615;4.09e-23;3|ontology_enrichment_celltype_v019_2=CL:0001014,4.61e-131,2;CL:0001016,4.61e-131,2;CL:0000453,2.19e-53,5;CL:0000840,9.76e-45,5;CL:0001029,9.76e-45,5;CL:0000990,2.66e-30,8;CL:0000451,4.86e-25,10;CL:0002615,4.09e-23,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3369!5.28e-09!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003688!6.11e-12!6;UBERON:0002358!6.11e-12!6;UBERON:0003684!6.11e-12!6;UBERON:0001178!6.11e-12!6;UBERON:0001301!3.87e-09!1;UBERON:0002336!1.22e-08!1;UBERON:0001018!1.22e-08!1;UBERON:0002473!1.22e-08!1;UBERON:0005340!1.22e-08!1;UBERON:0002316!1.22e-08!1;UBERON:0003544!1.22e-08!1;UBERON:0001020!1.22e-08!1;UBERON:0005970!1.22e-08!1;UBERON:0002437!1.22e-08!1;UBERON:0002363!1.32e-08!1;UBERON:0007647!1.32e-08!1;UBERON:0010115!1.32e-08!1;UBERON:0006834!1.42e-08!1;UBERON:0002372!1.91e-08!1;UBERON:0001961!1.91e-08!1;UBERON:0001744!1.91e-08!1;UBERON:0001735!1.91e-08!1;UBERON:0002022!2.22e-08!1;UBERON:0007023!5.61e-07!115|ontology_enrichment_uberon_v019=UBERON:0003688;2.74e-12;6!UBERON:0002358;2.74e-12;6!UBERON:0003684;2.74e-12;6!UBERON:0001178;2.74e-12;6!UBERON:0004457;1.21e-08;9!UBERON:0000042;1.21e-08;9|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.74e-12,6;UBERON:0002358,2.74e-12,6;UBERON:0003684,2.74e-12,6;UBERON:0001178,2.74e-12,6;UBERON:0004457,8.38e-07,12;UBERON:0000042,8.38e-07,12|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57191197463259,0.542621605391443,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.61384789315225,0,0,0,0.482561763430822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.2218408777316,30.952078182318,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p34@LIMS2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=55679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |||
|TSSclassifier=W | |||
|UniProt=Q7Z4I2,F8WEF3 | |||
|association_with_transcript=-291bp_to_ENST00000409254,ENST00000413578_5end | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_34_at_LIMS2_5end | |||
|id=chr2:128408404..128408428,- | |||
|ontology_enrichment_celltype=CL:0001014!1.01e-16!2;CL:0001016!1.01e-16!2;CL:0002195!2.95e-16!2;CL:0002571!2.95e-16!2;CL:0002580!3.27e-11!3;CL:0002615!4.66e-11!3;CL:0000453!3.34e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0001014;4.61e-131;2!CL:0001016;4.61e-131;2!CL:0000453;2.19e-53;5!CL:0000840;9.76e-45;5!CL:0000990;2.66e-30;8!CL:0000451;4.86e-25;10!CL:0002615;4.09e-23;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,4.61e-131,2;CL:0001016,4.61e-131,2;CL:0000453,2.19e-53,5;CL:0000840,9.76e-45,5;CL:0001029,9.76e-45,5;CL:0000990,2.66e-30,8;CL:0000451,4.86e-25,10;CL:0002615,4.09e-23,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3369!5.28e-09!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!6.11e-12!6;UBERON:0002358!6.11e-12!6;UBERON:0003684!6.11e-12!6;UBERON:0001178!6.11e-12!6;UBERON:0001301!3.87e-09!1;UBERON:0002336!1.22e-08!1;UBERON:0001018!1.22e-08!1;UBERON:0002473!1.22e-08!1;UBERON:0005340!1.22e-08!1;UBERON:0002316!1.22e-08!1;UBERON:0003544!1.22e-08!1;UBERON:0001020!1.22e-08!1;UBERON:0005970!1.22e-08!1;UBERON:0002437!1.22e-08!1;UBERON:0002363!1.32e-08!1;UBERON:0007647!1.32e-08!1;UBERON:0010115!1.32e-08!1;UBERON:0006834!1.42e-08!1;UBERON:0002372!1.91e-08!1;UBERON:0001961!1.91e-08!1;UBERON:0001744!1.91e-08!1;UBERON:0001735!1.91e-08!1;UBERON:0002022!2.22e-08!1;UBERON:0007023!5.61e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.74e-12;6!UBERON:0002358;2.74e-12;6!UBERON:0003684;2.74e-12;6!UBERON:0001178;2.74e-12;6!UBERON:0004457;1.21e-08;9!UBERON:0000042;1.21e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.74e-12,6;UBERON:0002358,2.74e-12,6;UBERON:0003684,2.74e-12,6;UBERON:0001178,2.74e-12,6;UBERON:0004457,8.38e-07,12;UBERON:0000042,8.38e-07,12 | |||
|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57191197463259,0.542621605391443,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.61384789315225,0,0,0,0.482561763430822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.2218408777316,30.952078182318,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p34@LIMS2 | |||
}} |
Revision as of 13:25, 12 September 2013
Short description: | p34@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_34_at_LIMS2_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | -291bp_to_ENST00000409254, ENST00000413578_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q7Z4I2F8WEF3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 4.61e-131 | 2 |
immature CD1a-positive Langerhans cell | 4.61e-131 | 2 |
Langerhans cell | 2.19e-53 | 5 |
immature conventional dendritic cell | 9.76e-45 | 5 |
common dendritic progenitor | 9.76e-45 | 5 |
conventional dendritic cell | 2.66e-30 | 8 |
dendritic cell | 4.86e-25 | 10 |
adipocyte of omentum tissue | 4.09e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.74e-12 | 6 |
peritoneum | 2.74e-12 | 6 |
abdominal cavity | 2.74e-12 | 6 |
visceral peritoneum | 2.74e-12 | 6 |
cavity lining | 8.38e-07 | 12 |
serous membrane | 8.38e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.