FFCP PHASE1:Hg19::chr3:165178268..165178277,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4301|description=CAGE_peak_at_chr3:165178268..165178277,+|id=chr3:165178268..165178277,+|ontology_enrichment_celltype=CL:0000066!2.21e-23!254;CL:0000244!1.37e-10!4;CL:0000731!1.37e-10!4;CL:0002541!2.02e-08!3;CL:0002076!1.04e-07!43;CL:0002231!1.44e-07!3|ontology_enrichment_celltype_v019=CL:0002536;2.98e-16;2!CL:0000349;2.22e-14;19!CL:0002541;1.98e-11;3!CL:0000244;1.40e-08;4!CL:0000731;1.40e-08;4!CL:0002537;2.31e-07;5|ontology_enrichment_celltype_v019_2=CL:0002536,4.08e-16,2;CL:0000349,3.07e-14,19;CL:0002541,3.09e-11,3;CL:0000066,1.15e-09,253;CL:0000244,1.07e-08,4;CL:0000731,1.07e-08,4;CL:0002537,2.39e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.33e-13!106;DOID:0050687!1.37e-09!143;DOID:1749!4.71e-08!14|ontology_enrichment_disease_v019=DOID:4468;2.98e-16;2!DOID:4929;2.98e-16;2!DOID:1749;4.67e-09;14!DOID:299;1.75e-07;25|ontology_enrichment_disease_v019_2=DOID:4468,2.03e-16,2;DOID:4929,2.19e-16,2;DOID:1749,4.78e-09,14;DOID:305,2.26e-08,106;DOID:299,1.69e-07,25|ontology_enrichment_uberon=UBERON:0001737!4.22e-19!9;UBERON:0005631!3.61e-13!14;UBERON:0000158!3.61e-13!14;UBERON:0004119!2.65e-09!169;UBERON:0000925!2.65e-09!169;UBERON:0006595!2.65e-09!169;UBERON:0006554!5.63e-09!44;UBERON:0001008!1.07e-08!45;UBERON:0003124!1.79e-08!7;UBERON:0000365!1.88e-08!5;UBERON:0000476!2.02e-08!3;UBERON:0000920!2.02e-08!3;UBERON:0001557!4.01e-08!19;UBERON:0000065!1.80e-07!53;UBERON:0008947!2.37e-07!38;UBERON:0003258!2.37e-07!38;UBERON:0005910!5.03e-07!6;UBERON:0001004!5.04e-07!72;UBERON:0000478!6.77e-07!24|ontology_enrichment_uberon_v019=UBERON:0005631;1.04e-27;10!UBERON:0000158;1.04e-27;10!UBERON:0000305;3.82e-18;7!UBERON:0003124;1.98e-11;3!UBERON:0000920;1.98e-11;3!UBERON:0000478;2.78e-11;24!UBERON:0004913;5.51e-09;1!UBERON:0003703;5.51e-09;1!UBERON:0001174;5.51e-09;1!UBERON:0004914;5.51e-09;1!UBERON:0002394;1.40e-08;4!UBERON:0003928;1.40e-08;4!UBERON:0000058;1.43e-07;10!UBERON:0000365;4.99e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.75e-19,14;UBERON:0000158,1.75e-19,14;UBERON:0000305,4.78e-18,7;UBERON:0004871,8.07e-16,8;UBERON:0000920,3.09e-11,3;UBERON:0000478,3.58e-11,24;UBERON:0004913,7.85e-09,1;UBERON:0003703,7.85e-09,1;UBERON:0001174,7.85e-09,1;UBERON:0004914,7.85e-09,1;UBERON:0000365,4.04e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.31064823278103,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.0787107813136792,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.505754070234305,0.482022059766964,0.55146986366197,0.217879444092406,0.237270619111097,0.134831308160164,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,1.10581869652794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.802025881213139,0.368323955743585,0,0,0,0.902399225814824,0.924184045252977,0,0,2.95544560900052,0,0,0,0,0,0,0.764628819135115,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,1.4875642382488,0.576570202095319,1.27612712494584,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,0,0,0,0.43050537267123,1.68471475667626,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,7.38753981696674,4.29740072527842,0,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,1.43789361835723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19001159731919,1.09917112082235,0.533034776018635,0,0,0,0,0,0,0,0,1.47698645169619,1.46909527343233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0,0.783939179315021,0.522355239482415,0,0,0,0.0730893170861856,0,0,0,0,0,0,0.0633107959558787,0,0.480952921509202,0,0,0,0,0,0.14405479798815,0.621262677827163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46838880439127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4301 | |||
|description=CAGE_peak_at_chr3:165178268..165178277,+ | |||
|id=chr3:165178268..165178277,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.21e-23!254;CL:0000244!1.37e-10!4;CL:0000731!1.37e-10!4;CL:0002541!2.02e-08!3;CL:0002076!1.04e-07!43;CL:0002231!1.44e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002536;2.98e-16;2!CL:0000349;2.22e-14;19!CL:0002541;1.98e-11;3!CL:0000244;1.40e-08;4!CL:0000731;1.40e-08;4!CL:0002537;2.31e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002536,4.08e-16,2;CL:0000349,3.07e-14,19;CL:0002541,3.09e-11,3;CL:0000066,1.15e-09,253;CL:0000244,1.07e-08,4;CL:0000731,1.07e-08,4;CL:0002537,2.39e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.33e-13!106;DOID:0050687!1.37e-09!143;DOID:1749!4.71e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:4468;2.98e-16;2!DOID:4929;2.98e-16;2!DOID:1749;4.67e-09;14!DOID:299;1.75e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.03e-16,2;DOID:4929,2.19e-16,2;DOID:1749,4.78e-09,14;DOID:305,2.26e-08,106;DOID:299,1.69e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.22e-19!9;UBERON:0005631!3.61e-13!14;UBERON:0000158!3.61e-13!14;UBERON:0004119!2.65e-09!169;UBERON:0000925!2.65e-09!169;UBERON:0006595!2.65e-09!169;UBERON:0006554!5.63e-09!44;UBERON:0001008!1.07e-08!45;UBERON:0003124!1.79e-08!7;UBERON:0000365!1.88e-08!5;UBERON:0000476!2.02e-08!3;UBERON:0000920!2.02e-08!3;UBERON:0001557!4.01e-08!19;UBERON:0000065!1.80e-07!53;UBERON:0008947!2.37e-07!38;UBERON:0003258!2.37e-07!38;UBERON:0005910!5.03e-07!6;UBERON:0001004!5.04e-07!72;UBERON:0000478!6.77e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.04e-27;10!UBERON:0000158;1.04e-27;10!UBERON:0000305;3.82e-18;7!UBERON:0003124;1.98e-11;3!UBERON:0000920;1.98e-11;3!UBERON:0000478;2.78e-11;24!UBERON:0004913;5.51e-09;1!UBERON:0003703;5.51e-09;1!UBERON:0001174;5.51e-09;1!UBERON:0004914;5.51e-09;1!UBERON:0002394;1.40e-08;4!UBERON:0003928;1.40e-08;4!UBERON:0000058;1.43e-07;10!UBERON:0000365;4.99e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.75e-19,14;UBERON:0000158,1.75e-19,14;UBERON:0000305,4.78e-18,7;UBERON:0004871,8.07e-16,8;UBERON:0000920,3.09e-11,3;UBERON:0000478,3.58e-11,24;UBERON:0004913,7.85e-09,1;UBERON:0003703,7.85e-09,1;UBERON:0001174,7.85e-09,1;UBERON:0004914,7.85e-09,1;UBERON:0000365,4.04e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.31064823278103,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.0787107813136792,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.505754070234305,0.482022059766964,0.55146986366197,0.217879444092406,0.237270619111097,0.134831308160164,0.588664395376038,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,1.10581869652794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.283550194484773,0.0895585227028483,0.581267877027924,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.802025881213139,0.368323955743585,0,0,0,0.902399225814824,0.924184045252977,0,0,2.95544560900052,0,0,0,0,0,0,0.764628819135115,0,0.671624264166535,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,1.4875642382488,0.576570202095319,1.27612712494584,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,0,0,0,0.43050537267123,1.68471475667626,0.886860307073351,1.37834040124176,0,0,0,0,0,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,7.38753981696674,4.29740072527842,0,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,1.43789361835723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19001159731919,1.09917112082235,0.533034776018635,0,0,0,0,0,0,0,0,1.47698645169619,1.46909527343233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0,0.783939179315021,0.522355239482415,0,0,0,0.0730893170861856,0,0,0,0,0,0,0.0633107959558787,0,0.480952921509202,0,0,0,0,0,0.14405479798815,0.621262677827163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46838880439127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706756583783524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0,1.65085738669511,0,0.381382095467167,0,0,0,0,0,0,0.327543835020193,1.18284868973636,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0.709163045303809,0,0,0,1.68163297988273,0,1.72742072974897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672791175483681,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.70667884002515,0,0,0,0,0,0 | |||
|short_description=p@chr3:165178268..165178277,+ | |||
}} |
Revision as of 22:33, 12 September 2013
Short description: | p@chr3:165178268..165178277, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:165178268..165178277, + |
Coexpression cluster: | C4301_alveolar_malignant_amniotic_squamous_Renal_oral_acantholytic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amniotic epithelial cell | 4.08e-16 | 2 |
extraembryonic cell | 3.07e-14 | 19 |
chorionic membrane mesenchymal stem cell | 3.09e-11 | 3 |
epithelial cell | 1.15e-09 | 253 |
transitional epithelial cell | 1.07e-08 | 4 |
urothelial cell | 1.07e-08 | 4 |
amnion mesenchymal stem cell | 2.39e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.75e-19 | 14 |
membranous layer | 1.75e-19 | 14 |
amnion | 4.78e-18 | 7 |
somatic layer of lateral plate mesoderm | 8.07e-16 | 8 |
egg chorion | 3.09e-11 | 3 |
extraembryonic structure | 3.58e-11 | 24 |
hepatopancreatic ampulla | 7.85e-09 | 1 |
extrahepatic bile duct | 7.85e-09 | 1 |
common bile duct | 7.85e-09 | 1 |
duodenal papilla | 7.85e-09 | 1 |
urothelium | 4.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.03e-16 | 2 |
tubular adenocarcinoma | 2.19e-16 | 2 |
squamous cell carcinoma | 4.78e-09 | 14 |
carcinoma | 2.26e-08 | 106 |
adenocarcinoma | 1.69e-07 | 25 |
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