FFCP PHASE1:Hg19::chr3:16552074..16552079,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C763|description=CAGE_peak_at_chr3:16552074..16552079,+|id=chr3:16552074..16552079,+|ontology_enrichment_celltype=CL:0000738!1.09e-25!140;CL:0000988!1.59e-23!182;CL:0000080!4.09e-22!6;CL:0002031!2.42e-21!124;CL:0002087!2.44e-20!119;CL:0000037!8.14e-20!172;CL:0000566!8.14e-20!172;CL:0002057!8.27e-19!42;CL:0002032!1.10e-17!165;CL:0000837!1.10e-17!165;CL:0000557!1.36e-17!71;CL:0000860!2.25e-17!45;CL:0002009!3.47e-17!65;CL:0000453!3.88e-17!5;CL:0000990!2.15e-14!8;CL:0000839!1.42e-13!70;CL:0002194!2.49e-13!63;CL:0000576!2.49e-13!63;CL:0000040!2.49e-13!63;CL:0000559!2.49e-13!63;CL:0000763!1.05e-12!112;CL:0000049!1.05e-12!112;CL:0000766!2.85e-12!76;CL:0001014!6.49e-12!2;CL:0001016!6.49e-12!2;CL:0000451!9.69e-12!10;CL:0000134!1.21e-09!358;CL:0002320!2.49e-09!365;CL:0000840!1.54e-08!5;CL:0001029!1.54e-08!5;CL:0000219!3.15e-08!390;CL:0000842!1.17e-07!3;CL:0000048!6.56e-07!430|ontology_enrichment_celltype_v019=CL:0000860;2.31e-12;33!CL:0002057;2.31e-12;33!CL:0000473;1.59e-08;39!CL:0000234;1.59e-08;39!CL:0001014;1.87e-07;2!CL:0001016;1.87e-07;2!CL:0002087;1.91e-07;104|ontology_enrichment_celltype_v019_2=CL:0002031,2.58e-13,120;CL:0000988,5.03e-12,177;CL:0002087,1.26e-11,115;CL:0000738,1.40e-11,136;CL:0000860,3.32e-10,42;CL:0002057,3.32e-10,42;CL:0002032,1.49e-09,161;CL:0000837,1.49e-09,161;CL:0002009,3.89e-09,61;CL:0000037,4.32e-09,168;CL:0000473,6.90e-09,48;CL:0000234,6.90e-09,48;CL:0000557,2.81e-08,67;CL:0001014,1.64e-07,2;CL:0001016,1.64e-07,2;CL:0002194,4.89e-07,59;CL:0000576,4.89e-07,59;CL:0000040,4.89e-07,59;CL:0000559,4.89e-07,59|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0060060!5.43e-07!1;DOID:0060061!5.43e-07!1;DOID:8691!5.43e-07!1|ontology_enrichment_disease_v019=DOID:0060060;6.23e-14;1!DOID:0060061;6.23e-14;1!DOID:8691;6.23e-14;1|ontology_enrichment_disease_v019_2=DOID:0060060,5.85e-14,1;DOID:0060061,5.85e-14,1;DOID:8691,5.85e-14,1|ontology_enrichment_uberon=UBERON:0002390!2.61e-24!102;UBERON:0003061!2.61e-24!102;UBERON:0002193!1.08e-21!112;UBERON:0002371!3.17e-15!80;UBERON:0001474!6.39e-14!86;UBERON:0002405!3.23e-12!115;UBERON:0004765!2.45e-11!101;UBERON:0001434!2.45e-11!101;UBERON:0002384!6.64e-09!375;UBERON:0003081!8.01e-09!216;UBERON:0000178!1.03e-08!15;UBERON:0000179!1.03e-08!15;UBERON:0000463!1.03e-08!15;UBERON:0002106!1.59e-07!3;UBERON:0004854!1.59e-07!3;UBERON:0009034!1.59e-07!3;UBERON:0002095!1.59e-07!3;UBERON:0004782!1.59e-07!3;UBERON:0003281!1.59e-07!3;UBERON:0009664!1.59e-07!3;UBERON:0002296!1.59e-07!3;UBERON:0005602!1.59e-07!3;UBERON:0001179!1.59e-07!3;UBERON:0006293!1.59e-07!3|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.49e-09,98;UBERON:0003061,4.49e-09,98;UBERON:0002193,3.81e-08,108;UBERON:0002371,3.08e-07,76|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42535180810454,5.00813595644669,4.25038219093868,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.434021741431704,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0.689491361473237,0,1.35426486594342,0,0,0,1.53041946185451,0.320929027076094,3.19668562899521,0,0,0,0.870627715885752,0,1.24564449799115,0,0,0,1.21079900526674,0,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.74433805888995,0.988511511572023,1.67075119208729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10309883423452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.799791132412,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0.544017803369474,0.5013797880454,1.53172788381731,1.96723578425883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0,0,2.79982354196902,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C763 | |||
|description=CAGE_peak_at_chr3:16552074..16552079,+ | |||
|id=chr3:16552074..16552079,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.09e-25!140;CL:0000988!1.59e-23!182;CL:0000080!4.09e-22!6;CL:0002031!2.42e-21!124;CL:0002087!2.44e-20!119;CL:0000037!8.14e-20!172;CL:0000566!8.14e-20!172;CL:0002057!8.27e-19!42;CL:0002032!1.10e-17!165;CL:0000837!1.10e-17!165;CL:0000557!1.36e-17!71;CL:0000860!2.25e-17!45;CL:0002009!3.47e-17!65;CL:0000453!3.88e-17!5;CL:0000990!2.15e-14!8;CL:0000839!1.42e-13!70;CL:0002194!2.49e-13!63;CL:0000576!2.49e-13!63;CL:0000040!2.49e-13!63;CL:0000559!2.49e-13!63;CL:0000763!1.05e-12!112;CL:0000049!1.05e-12!112;CL:0000766!2.85e-12!76;CL:0001014!6.49e-12!2;CL:0001016!6.49e-12!2;CL:0000451!9.69e-12!10;CL:0000134!1.21e-09!358;CL:0002320!2.49e-09!365;CL:0000840!1.54e-08!5;CL:0001029!1.54e-08!5;CL:0000219!3.15e-08!390;CL:0000842!1.17e-07!3;CL:0000048!6.56e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.31e-12;33!CL:0002057;2.31e-12;33!CL:0000473;1.59e-08;39!CL:0000234;1.59e-08;39!CL:0001014;1.87e-07;2!CL:0001016;1.87e-07;2!CL:0002087;1.91e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,2.58e-13,120;CL:0000988,5.03e-12,177;CL:0002087,1.26e-11,115;CL:0000738,1.40e-11,136;CL:0000860,3.32e-10,42;CL:0002057,3.32e-10,42;CL:0002032,1.49e-09,161;CL:0000837,1.49e-09,161;CL:0002009,3.89e-09,61;CL:0000037,4.32e-09,168;CL:0000473,6.90e-09,48;CL:0000234,6.90e-09,48;CL:0000557,2.81e-08,67;CL:0001014,1.64e-07,2;CL:0001016,1.64e-07,2;CL:0002194,4.89e-07,59;CL:0000576,4.89e-07,59;CL:0000040,4.89e-07,59;CL:0000559,4.89e-07,59 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060060!5.43e-07!1;DOID:0060061!5.43e-07!1;DOID:8691!5.43e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060060;6.23e-14;1!DOID:0060061;6.23e-14;1!DOID:8691;6.23e-14;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,5.85e-14,1;DOID:0060061,5.85e-14,1;DOID:8691,5.85e-14,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.61e-24!102;UBERON:0003061!2.61e-24!102;UBERON:0002193!1.08e-21!112;UBERON:0002371!3.17e-15!80;UBERON:0001474!6.39e-14!86;UBERON:0002405!3.23e-12!115;UBERON:0004765!2.45e-11!101;UBERON:0001434!2.45e-11!101;UBERON:0002384!6.64e-09!375;UBERON:0003081!8.01e-09!216;UBERON:0000178!1.03e-08!15;UBERON:0000179!1.03e-08!15;UBERON:0000463!1.03e-08!15;UBERON:0002106!1.59e-07!3;UBERON:0004854!1.59e-07!3;UBERON:0009034!1.59e-07!3;UBERON:0002095!1.59e-07!3;UBERON:0004782!1.59e-07!3;UBERON:0003281!1.59e-07!3;UBERON:0009664!1.59e-07!3;UBERON:0002296!1.59e-07!3;UBERON:0005602!1.59e-07!3;UBERON:0001179!1.59e-07!3;UBERON:0006293!1.59e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.49e-09,98;UBERON:0003061,4.49e-09,98;UBERON:0002193,3.81e-08,108;UBERON:0002371,3.08e-07,76 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.42535180810454,5.00813595644669,4.25038219093868,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.434021741431704,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0.689491361473237,0,1.35426486594342,0,0,0,1.53041946185451,0.320929027076094,3.19668562899521,0,0,0,0.870627715885752,0,1.24564449799115,0,0,0,1.21079900526674,0,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.74433805888995,0.988511511572023,1.67075119208729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10309883423452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.799791132412,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0.544017803369474,0.5013797880454,1.53172788381731,1.96723578425883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0,0,2.79982354196902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:16552074..16552079,+ | |||
}} |
Revision as of 22:34, 12 September 2013
Short description: | p@chr3:16552074..16552079, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:16552074..16552079, + |
Coexpression cluster: | C763_cord_B_splenic_xeroderma_b_hairy_mycosis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 2.58e-13 | 120 |
hematopoietic cell | 5.03e-12 | 177 |
nongranular leukocyte | 1.26e-11 | 115 |
leukocyte | 1.40e-11 | 136 |
classical monocyte | 3.32e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.32e-10 | 42 |
hematopoietic oligopotent progenitor cell | 1.49e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.49e-09 | 161 |
macrophage dendritic cell progenitor | 3.89e-09 | 61 |
hematopoietic stem cell | 4.32e-09 | 168 |
defensive cell | 6.90e-09 | 48 |
phagocyte | 6.90e-09 | 48 |
granulocyte monocyte progenitor cell | 2.81e-08 | 67 |
CD1a-positive Langerhans cell | 1.64e-07 | 2 |
immature CD1a-positive Langerhans cell | 1.64e-07 | 2 |
monopoietic cell | 4.89e-07 | 59 |
monocyte | 4.89e-07 | 59 |
monoblast | 4.89e-07 | 59 |
promonocyte | 4.89e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.49e-09 | 98 |
blood island | 4.49e-09 | 98 |
hemolymphoid system | 3.81e-08 | 108 |
bone marrow | 3.08e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 5.85e-14 | 1 |
cutaneous T cell lymphoma | 5.85e-14 | 1 |
mycosis fungoides | 5.85e-14 | 1 |
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