FFCP PHASE1:Hg19::chr4:77958761..77958780,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:77958761..77958780,+|id=chr4:77958761..77958780,+|ontology_enrichment_celltype=CL:0000055!1.75e-19!180;CL:0000057!1.38e-15!75;CL:0002620!4.68e-11!23|ontology_enrichment_celltype_v019=CL:0002620;1.07e-12;23!CL:0000135;9.40e-10;3!CL:0000388;9.40e-10;3!CL:0002580;6.08e-09;3!CL:0002334;6.42e-08;12!CL:0000197;1.72e-07;6!CL:0000098;1.72e-07;6!CL:0002167;1.72e-07;6!CL:0000057;4.28e-07;73|ontology_enrichment_celltype_v019_2=CL:0000057,4.46e-18,76;CL:0002620,1.58e-12,23;CL:0000048,2.29e-10,427;CL:0000034,3.24e-10,441;CL:0000723,5.01e-10,433;CL:0000135,7.32e-10,3;CL:0000388,7.32e-10,3;CL:0002580,8.09e-09,3;CL:0002334,6.15e-08,12;CL:0000197,9.12e-08,6;CL:0000098,9.12e-08,6;CL:0002167,9.12e-08,6;CL:0000134,4.52e-07,354|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;2.02e-09;5!DOID:450;2.02e-09;5!DOID:66;2.02e-09;5!DOID:423;2.02e-09;5!DOID:0080000;2.02e-09;5!DOID:11722;2.02e-09;5|ontology_enrichment_disease_v019_2=DOID:17,2.69e-09,5;DOID:450,2.69e-09,5;DOID:66,2.69e-09,5;DOID:423,2.69e-09,5;DOID:0080000,2.69e-09,5;DOID:11722,2.69e-09,5|ontology_enrichment_uberon=UBERON:0002199!1.75e-09!45;UBERON:0002416!1.75e-09!45;UBERON:0002097!5.04e-09!40;UBERON:0003102!7.36e-08!95;UBERON:0000914!1.10e-07!83;UBERON:0002329!1.10e-07!83;UBERON:0003077!1.10e-07!83;UBERON:0003059!1.10e-07!83;UBERON:0007282!1.10e-07!83;UBERON:0009618!1.10e-07!83;UBERON:0007285!1.10e-07!83|ontology_enrichment_uberon_v019=UBERON:0004457;6.01e-11;9!UBERON:0000042;6.01e-11;9!UBERON:0007846;9.40e-10;3!UBERON:0000043;9.40e-10;3!UBERON:0007845;9.40e-10;3!UBERON:0003688;3.77e-08;6!UBERON:0002358;3.77e-08;6!UBERON:0003684;3.77e-08;6!UBERON:0001178;3.77e-08;6!UBERON:0002199;7.43e-08;46!UBERON:0002416;7.43e-08;46!UBERON:0002097;9.52e-08;41!UBERON:0003104;4.79e-07;7!UBERON:0009142;4.79e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.53e-10,46;UBERON:0002416,3.53e-10,46;UBERON:0002097,3.99e-10,41;UBERON:0007846,7.32e-10,3;UBERON:0000043,7.32e-10,3;UBERON:0007845,7.32e-10,3;UBERON:0003688,2.26e-08,6;UBERON:0002358,2.26e-08,6;UBERON:0003684,2.26e-08,6;UBERON:0001178,2.26e-08,6;UBERON:0004457,4.87e-08,12;UBERON:0000042,4.87e-08,12|phase1_expression=0.54503513781167,2.35510576280081,0.704772020479856,7.00513088471913,1.78784437770915,0,2.53299878168311,0,0,0,0,0,0,0.37129905888014,0.662794751455832,1.34465029290355,1.80808358407193,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0.572471974262113,0.958120975510189,0.502170558379211,0.152826811495903,0.0821005894499457,0,0,0,0,0.919421224478927,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.534880391567015,0,0,0.670700859703636,0.767175371061182,0.361439152384566,1.50401373190767,2.17269778441236,0,0,0.283604451492204,0.886917589850256,0.263504357079378,0.0654895377488563,0,0,0.649094787309367,0,0.531831842075461,0,0,0,0,0,0,0,0,0,0.208994966536811,0.516833518338658,0.35576626268671,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0.506522046658319,0.397227542439656,0.860509862246441,0.354668382198357,1.12135520028461,0,1.2333377420858,0,0.134710672069688,0.326923806226917,0.151357427644931,1.15235184896,0,0.624320153660641,0,0.597794722207204,0.352303495931295,0.809364721840658,1.12360645361799,0.204154171254893,0.368502951935304,0.103325781175765,0,3.70900393917835,0,0,0.505008341862199,0,0.277064115484183,0.877955241761676,2.14541457059314,0.751190294532984,0.340296549480063,1.25572744982203,3.84403299873421,1.48352330811693,2.10063767259082,0.92747276314595,1.54584324027377,2.97786970130544,0.506328996723799,0.584622030967192,2.01947019395292,2.48534726334208,0.484938170456436,2.84007674013291,0.604512589365842,1.01736355386293,0.386521706326594,0.545492241181669,0.286804595389004,0,0,0.116193942869518,0.10366105501537,0,0.72995471815166,0,2.57296375277154,0,0.464367928031979,1.44375896333917,0.354920400119532,0,0.241011029883482,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.463721619900307,0,0.433099343283221,0.462985512576611,0.190254152234598,0,0,0,0,0.445893486866185,0,0,0.283550194484773,0.268675568108545,0.290633938513962,0.383382679165211,0,0.088048434013226,0,0,0.12624243342638,0.190493682876507,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0,0,0.8800594298514,0.517086863031111,0,0,0.797814349754612,3.12022310734098,0.514414748524284,0,0,0.428933980974443,0,0.823240336780769,0.325736184293735,0.710783897485092,2.37585561880029,0.301439377059586,0,0.199945982364114,0,1.00451418286425,4.216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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:77958761..77958780,+ | |||
|id=chr4:77958761..77958780,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.75e-19!180;CL:0000057!1.38e-15!75;CL:0002620!4.68e-11!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.07e-12;23!CL:0000135;9.40e-10;3!CL:0000388;9.40e-10;3!CL:0002580;6.08e-09;3!CL:0002334;6.42e-08;12!CL:0000197;1.72e-07;6!CL:0000098;1.72e-07;6!CL:0002167;1.72e-07;6!CL:0000057;4.28e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.46e-18,76;CL:0002620,1.58e-12,23;CL:0000048,2.29e-10,427;CL:0000034,3.24e-10,441;CL:0000723,5.01e-10,433;CL:0000135,7.32e-10,3;CL:0000388,7.32e-10,3;CL:0002580,8.09e-09,3;CL:0002334,6.15e-08,12;CL:0000197,9.12e-08,6;CL:0000098,9.12e-08,6;CL:0002167,9.12e-08,6;CL:0000134,4.52e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.02e-09;5!DOID:450;2.02e-09;5!DOID:66;2.02e-09;5!DOID:423;2.02e-09;5!DOID:0080000;2.02e-09;5!DOID:11722;2.02e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.69e-09,5;DOID:450,2.69e-09,5;DOID:66,2.69e-09,5;DOID:423,2.69e-09,5;DOID:0080000,2.69e-09,5;DOID:11722,2.69e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.75e-09!45;UBERON:0002416!1.75e-09!45;UBERON:0002097!5.04e-09!40;UBERON:0003102!7.36e-08!95;UBERON:0000914!1.10e-07!83;UBERON:0002329!1.10e-07!83;UBERON:0003077!1.10e-07!83;UBERON:0003059!1.10e-07!83;UBERON:0007282!1.10e-07!83;UBERON:0009618!1.10e-07!83;UBERON:0007285!1.10e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;6.01e-11;9!UBERON:0000042;6.01e-11;9!UBERON:0007846;9.40e-10;3!UBERON:0000043;9.40e-10;3!UBERON:0007845;9.40e-10;3!UBERON:0003688;3.77e-08;6!UBERON:0002358;3.77e-08;6!UBERON:0003684;3.77e-08;6!UBERON:0001178;3.77e-08;6!UBERON:0002199;7.43e-08;46!UBERON:0002416;7.43e-08;46!UBERON:0002097;9.52e-08;41!UBERON:0003104;4.79e-07;7!UBERON:0009142;4.79e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,3.53e-10,46;UBERON:0002416,3.53e-10,46;UBERON:0002097,3.99e-10,41;UBERON:0007846,7.32e-10,3;UBERON:0000043,7.32e-10,3;UBERON:0007845,7.32e-10,3;UBERON:0003688,2.26e-08,6;UBERON:0002358,2.26e-08,6;UBERON:0003684,2.26e-08,6;UBERON:0001178,2.26e-08,6;UBERON:0004457,4.87e-08,12;UBERON:0000042,4.87e-08,12 | |||
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| |||
|short_description=p@chr4:77958761..77958780,+ | |||
}} |
Revision as of 11:49, 13 September 2013
Short description: | p@chr4:77958761..77958780, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:77958761..77958780, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.46e-18 | 76 |
skin fibroblast | 1.58e-12 | 23 |
multi fate stem cell | 2.29e-10 | 427 |
stem cell | 3.24e-10 | 441 |
somatic stem cell | 5.01e-10 | 433 |
fibrocyte | 7.32e-10 | 3 |
tendon cell | 7.32e-10 | 3 |
preadipocyte of the breast | 8.09e-09 | 3 |
preadipocyte | 6.15e-08 | 12 |
receptor cell | 9.12e-08 | 6 |
sensory epithelial cell | 9.12e-08 | 6 |
olfactory epithelial cell | 9.12e-08 | 6 |
mesenchymal cell | 4.52e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
integument | 3.53e-10 | 46 |
integumental system | 3.53e-10 | 46 |
skin of body | 3.99e-10 | 41 |
dense regular connective tissue | 7.32e-10 | 3 |
tendon | 7.32e-10 | 3 |
regular connective tissue | 7.32e-10 | 3 |
omentum | 2.26e-08 | 6 |
peritoneum | 2.26e-08 | 6 |
abdominal cavity | 2.26e-08 | 6 |
visceral peritoneum | 2.26e-08 | 6 |
cavity lining | 4.87e-08 | 12 |
serous membrane | 4.87e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.69e-09 | 5 |
myotonic disease | 2.69e-09 | 5 |
muscle tissue disease | 2.69e-09 | 5 |
myopathy | 2.69e-09 | 5 |
muscular disease | 2.69e-09 | 5 |
myotonic dystrophy | 2.69e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.