FFCP PHASE1:Hg19::chr5:114515936..114515944,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55521|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16280|TSSclassifier=S|UniProt=Q9NQ86|association_with_transcript=-80bp_to_ENST00000282369_5end|coexpression_cluster_id=C1|description=CAGE_peak_11_at_TRIM36_5end|id=chr5:114515936..114515944,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0009117;2.00e-40;10!UBERON:0005564;2.00e-40;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!4.72e-26!86;UBERON:0001049!1.62e-25!57;UBERON:0005068!1.62e-25!57;UBERON:0006241!1.62e-25!57;UBERON:0007135!1.62e-25!57;UBERON:0001017!1.19e-23!82;UBERON:0000073!1.87e-23!94;UBERON:0001016!1.87e-23!94;UBERON:0002616!1.51e-20!59;UBERON:0000955!1.69e-20!69;UBERON:0006238!1.69e-20!69;UBERON:0007023!1.60e-19!115;UBERON:0003075!1.60e-19!86;UBERON:0007284!1.60e-19!86;UBERON:0001893!3.61e-19!34;UBERON:0002346!1.38e-18!90;UBERON:0002619!7.88e-17!22;UBERON:0002780!7.75e-16!41;UBERON:0001890!7.75e-16!41;UBERON:0006240!7.75e-16!41;UBERON:0001869!1.07e-15!32;UBERON:0003080!1.89e-15!42;UBERON:0001896!2.05e-15!3;UBERON:0005290!2.05e-15!3;UBERON:0010096!2.05e-15!3;UBERON:0002791!3.67e-15!33;UBERON:0000956!7.49e-15!25;UBERON:0000203!7.49e-15!25;UBERON:0002020!9.29e-15!34;UBERON:0003528!9.29e-15!34;UBERON:0003056!2.87e-13!61;UBERON:0000033!5.30e-13!123;UBERON:0001950!5.57e-13!20;UBERON:0002298!7.01e-13!8;UBERON:0007190!1.75e-12!1;UBERON:0002022!2.20e-12!1;UBERON:0004121!2.47e-12!169;UBERON:0000153!2.54e-12!129;UBERON:0007811!2.54e-12!129;UBERON:0002902!3.08e-12!1;UBERON:0009899!3.08e-12!1;UBERON:0002336!3.45e-12!1;UBERON:0001018!3.45e-12!1;UBERON:0002473!3.45e-12!1;UBERON:0005340!3.45e-12!1;UBERON:0002316!3.45e-12!1;UBERON:0003544!3.45e-12!1;UBERON:0001020!3.45e-12!1;UBERON:0005970!3.45e-12!1;UBERON:0002437!3.45e-12!1;UBERON:0002581!3.85e-12!1;UBERON:0000924!5.26e-12!173;UBERON:0006601!5.26e-12!173;UBERON:0003076!5.44e-12!15;UBERON:0003057!5.44e-12!15;UBERON:0002021!7.44e-10!5;UBERON:0004733!9.01e-09!12;UBERON:0002028!9.01e-09!12;UBERON:0007277!9.01e-09!12;UBERON:0000200!3.02e-08!6;UBERON:0004732!3.89e-08!13;UBERON:0001954!6.80e-07!2;UBERON:0003022!6.80e-07!2;UBERON:0002421!6.80e-07!2;UBERON:0002600!6.80e-07!2;UBERON:0002148!7.61e-07!2;UBERON:0009662!7.61e-07!2|ontology_enrichment_uberon_v019=UBERON:0000473;3.99e-50;8!UBERON:0003135;6.80e-37;11!UBERON:0000991;4.86e-20;21!UBERON:0003101;3.41e-19;22!UBERON:0000079;3.41e-19;22!UBERON:0003133;3.55e-08;44!UBERON:0002323;3.42e-07;45|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.99e-50,8;UBERON:0003135,6.80e-37,11;UBERON:0000991,4.86e-20,21;UBERON:0009196,4.86e-20,21;UBERON:0009117,4.86e-20,21;UBERON:0005564,4.86e-20,21;UBERON:0004176,3.41e-19,22;UBERON:0003101,3.41e-19,22;UBERON:0000079,3.41e-19,22;UBERON:0002323,7.07e-10,46;UBERON:0003133,1.62e-09,48;UBERON:0004458,2.38e-09,49;UBERON:0003886,1.34e-08,54;UBERON:0005156,5.66e-08,59;UBERON:0000990,5.66e-08,59;UBERON:0002553,9.44e-08,61|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55521 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16280 | |||
|TSSclassifier=S | |||
|UniProt=Q9NQ86 | |||
|association_with_transcript=-80bp_to_ENST00000282369_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_11_at_TRIM36_5end | |||
|id=chr5:114515936..114515944,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.00e-40;10!UBERON:0005564;2.00e-40;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000473;3.99e-50;8!UBERON:0003135;6.80e-37;11!UBERON:0000991;4.86e-20;21!UBERON:0003101;3.41e-19;22!UBERON:0000079;3.41e-19;22!UBERON:0003133;3.55e-08;44!UBERON:0002323;3.42e-07;45 | |||
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|short_description=p11@TRIM36 | |||
}} |
Revision as of 12:43, 13 September 2013
Short description: | p11@TRIM36 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_TRIM36_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -80bp_to_ENST00000282369_5end |
EntrezGene: | TRIM36 |
HGNC: | 16280 |
UniProt: | Q9NQ86 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 3.99e-50 | 8 |
male reproductive organ | 6.80e-37 | 11 |
gonad | 4.86e-20 | 21 |
indifferent external genitalia | 4.86e-20 | 21 |
indifferent gonad | 4.86e-20 | 21 |
gonad primordium | 4.86e-20 | 21 |
external genitalia | 3.41e-19 | 22 |
male organism | 3.41e-19 | 22 |
male reproductive system | 3.41e-19 | 22 |
body cavity | 7.07e-10 | 46 |
reproductive organ | 1.62e-09 | 48 |
body cavity or lining | 2.38e-09 | 49 |
body cavity precursor | 1.34e-08 | 54 |
reproductive structure | 5.66e-08 | 59 |
reproductive system | 5.66e-08 | 59 |
anatomical cavity | 9.44e-08 | 61 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.