FFCP PHASE1:Hg19::chr7:140341251..140341265,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27147|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=22212|TSSclassifier=S|UniProt=C9IY76|association_with_transcript=19bp_to_ENST00000491728_5end|description=CAGE_peak_3_at_DENND2A_5end|id=chr7:140341251..140341265,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000708;2.74e-34;3!CL:0000346;2.44e-33;3!CL:1000428;2.44e-33;3!CL:0002559;2.68e-20;5!CL:0002541;4.29e-16;3!CL:0000327;2.54e-07;15!CL:0000039;3.45e-07;7!CL:0000586;3.45e-07;7!CL:0002575;8.76e-07;2|ontology_enrichment_celltype_v019_2=CL:0000708,2.45e-34,3;CL:0000346,1.32e-33,3;CL:1000428,1.32e-33,3;CL:0002559,1.86e-20,5;CL:0002541,3.69e-16,3;CL:0000327,2.48e-07,15;CL:0000039,3.91e-07,7;CL:0000586,3.91e-07,7;CL:0002575,6.42e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.64e-11!115;UBERON:0000033!2.71e-10!123;UBERON:0002616!4.04e-10!59;UBERON:0005743!6.46e-10!86;UBERON:0003075!1.64e-09!86;UBERON:0007284!1.64e-09!86;UBERON:0000153!2.66e-09!129;UBERON:0007811!2.66e-09!129;UBERON:0001017!3.33e-09!82;UBERON:0000481!4.18e-09!347;UBERON:0000955!7.57e-09!69;UBERON:0006238!7.57e-09!69;UBERON:0002346!1.04e-08!90;UBERON:0001049!1.55e-08!57;UBERON:0005068!1.55e-08!57;UBERON:0006241!1.55e-08!57;UBERON:0007135!1.55e-08!57;UBERON:0004121!2.97e-08!169;UBERON:0000073!3.60e-08!94;UBERON:0001016!3.60e-08!94;UBERON:0000064!4.55e-08!219;UBERON:0000477!5.32e-08!286;UBERON:0000119!7.69e-08!312;UBERON:0000924!8.69e-08!173;UBERON:0006601!8.69e-08!173|ontology_enrichment_uberon_v019=UBERON:0003210;2.74e-34;3!UBERON:0000412;2.44e-33;3!UBERON:0001992;2.44e-33;3!UBERON:0002073;2.68e-20;5!UBERON:0003124;4.29e-16;3!UBERON:0000920;4.29e-16;3!UBERON:0002134;1.05e-12;1!UBERON:0005208;1.05e-12;1!UBERON:0004145;1.05e-12;1!UBERON:0005946;1.05e-12;1!UBERON:0005965;1.05e-12;1!UBERON:0002078;1.05e-12;1!UBERON:0002067;1.49e-11;9!UBERON:0001003;3.86e-07;15!UBERON:0007376;3.86e-07;15!UBERON:0002081;5.57e-07;2!UBERON:0002133;5.57e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0003210,2.45e-34,3;UBERON:0000412,1.32e-33,3;UBERON:0001992,1.32e-33,3;UBERON:0002073,1.86e-20,5;UBERON:0005086,1.86e-20,5;UBERON:0000920,3.69e-16,3;UBERON:0002134,1.11e-12,1;UBERON:0005208,1.11e-12,1;UBERON:0005946,1.11e-12,1;UBERON:0005965,1.11e-12,1;UBERON:0002078,1.11e-12,1;UBERON:0002067,1.22e-11,9;UBERON:0004016,1.22e-11,9;UBERON:0010083,1.22e-11,9;UBERON:0004923,1.19e-07,66;UBERON:0003124,1.96e-07,7;UBERON:0001003,3.43e-07,15;UBERON:0007376,3.43e-07,15;UBERON:0007383,3.43e-07,15;UBERON:0002081,5.73e-07,2;UBERON:0002133,5.73e-07,2;UBERON:0010227,5.73e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.246242116153576,0.612002073732759,0.940364164434263,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0.756787138224657,0,0,0,0,0,0,0.323745888736263,0.421352420106746,0.204154171254893,0.245668634623536,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0.272746120590835,0,0.121973706129595,0.132529768321485,0.116193942869518,0.310983165046111,0.504641701751257,0,1.56449532329816,1.92972281457866,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0.185176890317059,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0.253991577168676,0.381988425558278,0,0,0,0.901029173531752,0,8.40983132590205,1.74384027533312,2.0534720029866,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173767228936166,1.95801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0,0,0,0,0.182091168006717,0.131124414959424,0.451199612907412,0.462092022626489,0.784349769176855,0,0.211103257785751,1.13733384070897,0,0,0,0.270946437543853,0,0.764628819135115,0,1.34324852833307,0,0,0,0,0.325378394664303,0.309123034943167,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6970372701606,0.616067160352178,0,0,0.18532421910392,0,3.34942532423701,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0.221158519862449,0,0,0,0,0.0769502585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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27147 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22212 | |||
|TSSclassifier=S | |||
|UniProt=C9IY76 | |||
|association_with_transcript=19bp_to_ENST00000491728_5end | |||
|description=CAGE_peak_3_at_DENND2A_5end | |||
|id=chr7:140341251..140341265,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000708;2.74e-34;3!CL:0000346;2.44e-33;3!CL:1000428;2.44e-33;3!CL:0002559;2.68e-20;5!CL:0002541;4.29e-16;3!CL:0000327;2.54e-07;15!CL:0000039;3.45e-07;7!CL:0000586;3.45e-07;7!CL:0002575;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000708,2.45e-34,3;CL:0000346,1.32e-33,3;CL:1000428,1.32e-33,3;CL:0002559,1.86e-20,5;CL:0002541,3.69e-16,3;CL:0000327,2.48e-07,15;CL:0000039,3.91e-07,7;CL:0000586,3.91e-07,7;CL:0002575,6.42e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.64e-11!115;UBERON:0000033!2.71e-10!123;UBERON:0002616!4.04e-10!59;UBERON:0005743!6.46e-10!86;UBERON:0003075!1.64e-09!86;UBERON:0007284!1.64e-09!86;UBERON:0000153!2.66e-09!129;UBERON:0007811!2.66e-09!129;UBERON:0001017!3.33e-09!82;UBERON:0000481!4.18e-09!347;UBERON:0000955!7.57e-09!69;UBERON:0006238!7.57e-09!69;UBERON:0002346!1.04e-08!90;UBERON:0001049!1.55e-08!57;UBERON:0005068!1.55e-08!57;UBERON:0006241!1.55e-08!57;UBERON:0007135!1.55e-08!57;UBERON:0004121!2.97e-08!169;UBERON:0000073!3.60e-08!94;UBERON:0001016!3.60e-08!94;UBERON:0000064!4.55e-08!219;UBERON:0000477!5.32e-08!286;UBERON:0000119!7.69e-08!312;UBERON:0000924!8.69e-08!173;UBERON:0006601!8.69e-08!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0003210;2.74e-34;3!UBERON:0000412;2.44e-33;3!UBERON:0001992;2.44e-33;3!UBERON:0002073;2.68e-20;5!UBERON:0003124;4.29e-16;3!UBERON:0000920;4.29e-16;3!UBERON:0002134;1.05e-12;1!UBERON:0005208;1.05e-12;1!UBERON:0004145;1.05e-12;1!UBERON:0005946;1.05e-12;1!UBERON:0005965;1.05e-12;1!UBERON:0002078;1.05e-12;1!UBERON:0002067;1.49e-11;9!UBERON:0001003;3.86e-07;15!UBERON:0007376;3.86e-07;15!UBERON:0002081;5.57e-07;2!UBERON:0002133;5.57e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,2.45e-34,3;UBERON:0000412,1.32e-33,3;UBERON:0001992,1.32e-33,3;UBERON:0002073,1.86e-20,5;UBERON:0005086,1.86e-20,5;UBERON:0000920,3.69e-16,3;UBERON:0002134,1.11e-12,1;UBERON:0005208,1.11e-12,1;UBERON:0005946,1.11e-12,1;UBERON:0005965,1.11e-12,1;UBERON:0002078,1.11e-12,1;UBERON:0002067,1.22e-11,9;UBERON:0004016,1.22e-11,9;UBERON:0010083,1.22e-11,9;UBERON:0004923,1.19e-07,66;UBERON:0003124,1.96e-07,7;UBERON:0001003,3.43e-07,15;UBERON:0007376,3.43e-07,15;UBERON:0007383,3.43e-07,15;UBERON:0002081,5.73e-07,2;UBERON:0002133,5.73e-07,2;UBERON:0010227,5.73e-07,2 | |||
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|short_description=p3@DENND2A | |||
}} |
Revision as of 23:34, 13 September 2013
Short description: | p3@DENND2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_DENND2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000491728_5end |
EntrezGene: | DENND2A |
HGNC: | 22212 |
UniProt: | C9IY76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leptomeningeal cell | 2.45e-34 | 3 |
hair follicle dermal papilla cell | 1.32e-33 | 3 |
stem cell of epidermis | 1.32e-33 | 3 |
hair follicle cell | 1.86e-20 | 5 |
chorionic membrane mesenchymal stem cell | 3.69e-16 | 3 |
extracellular matrix secreting cell | 2.48e-07 | 15 |
germ line cell | 3.91e-07 | 7 |
germ cell | 3.91e-07 | 7 |
central nervous system pericyte | 6.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 2.45e-34 | 3 |
dermal papilla | 1.32e-33 | 3 |
papillary layer of dermis | 1.32e-33 | 3 |
hair follicle | 1.86e-20 | 5 |
hair follicle placode | 1.86e-20 | 5 |
egg chorion | 3.69e-16 | 3 |
tricuspid valve | 1.11e-12 | 1 |
right atrium valve | 1.11e-12 | 1 |
outflow tract of atrium | 1.11e-12 | 1 |
outflow part of right atrium | 1.11e-12 | 1 |
right cardiac atrium | 1.11e-12 | 1 |
dermis | 1.22e-11 | 9 |
dermatome | 1.22e-11 | 9 |
future dermis | 1.22e-11 | 9 |
organ component layer | 1.19e-07 | 66 |
chorion | 1.96e-07 | 7 |
skin epidermis | 3.43e-07 | 15 |
outer epithelium | 3.43e-07 | 15 |
enveloping layer of ectoderm | 3.43e-07 | 15 |
cardiac atrium | 5.73e-07 | 2 |
atrioventricular valve | 5.73e-07 | 2 |
future cardiac atrium | 5.73e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.