FFCP PHASE1:Hg19::chr7:44113679..44113690,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27434|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9185|TSSclassifier=S|UniProt=|association_with_transcript=26bp_to_ENST00000467607_5end|coexpression_cluster_id=C2897|description=CAGE_peak_7_at_POLM_5end|id=chr7:44113679..44113690,-|ontology_enrichment_celltype=CL:0000766!1.39e-12!76;CL:0002057!1.98e-11!42;CL:0000860!3.35e-10!45;CL:0000094!1.16e-08!8;CL:0002202!4.22e-08!9;CL:0002632!4.22e-08!9;CL:0000839!1.08e-07!70;CL:0000557!1.75e-07!71;CL:0000071!2.97e-07!18;CL:0002546!2.97e-07!18;CL:0002194!3.10e-07!63;CL:0000576!3.10e-07!63;CL:0000040!3.10e-07!63;CL:0000559!3.10e-07!63;CL:0002009!8.26e-07!65|ontology_enrichment_celltype_v019=CL:0002202;6.45e-23;9!CL:0002632;6.45e-23;9!CL:0002328;3.54e-18;3!CL:0002368;1.05e-15;13!CL:0000771;3.48e-13;2!CL:0000094;3.81e-12;8!CL:0000071;7.93e-11;18!CL:0002621;4.31e-09;3!CL:0000307;5.68e-09;3!CL:0000081;7.40e-09;11!CL:0000775;9.08e-09;3!CL:0002144;9.62e-09;3!CL:0002139;5.55e-08;24!CL:0002076;7.10e-08;42!CL:0000115;8.30e-08;36!CL:0002078;1.31e-07;45!CL:0000228;6.48e-07;1!CL:0002372;6.48e-07;1|ontology_enrichment_celltype_v019_2=CL:0002202,6.23e-23,9;CL:0002632,6.23e-23,9;CL:0002328,1.98e-18,3;CL:0002368,1.03e-15,13;CL:0000771,3.28e-13,2;CL:0000094,3.31e-12,8;CL:0000071,5.79e-11,18;CL:0002546,5.79e-11,18;CL:0002076,8.11e-10,42;CL:0002621,4.86e-09,3;CL:0000068,5.69e-09,3;CL:0000069,5.69e-09,3;CL:0000307,5.69e-09,3;CL:0000377,5.69e-09,3;CL:0000115,6.40e-09,36;CL:0000081,6.69e-09,11;CL:0000775,7.78e-09,3;CL:0002078,8.84e-09,45;CL:0002144,1.06e-08,3;CL:0000066,3.80e-08,253;CL:0002139,4.41e-08,24;CL:0002321,2.85e-07,250;CL:0000228,6.88e-07,1;CL:0002372,6.88e-07,1|ontology_enrichment_development_v019=CL:0002546;7.93e-11;18!CL:0000377;5.68e-09;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3112;6.48e-07;1|ontology_enrichment_disease_v019_2=DOID:3112,8.18e-07,1|ontology_enrichment_uberon=UBERON:0001986!2.97e-07!18;UBERON:0004638!2.97e-07!18;UBERON:0004852!2.97e-07!18|ontology_enrichment_uberon_v019=UBERON:0004815;3.54e-18;3!UBERON:0002031;3.54e-18;3!UBERON:0000490;3.03e-15;33!UBERON:0007196;1.55e-13;15!UBERON:0001558;1.55e-13;15!UBERON:0000487;9.46e-12;22!UBERON:0002185;4.07e-11;5!UBERON:0004638;7.93e-11;18!UBERON:0001986;7.93e-11;18!UBERON:0004852;7.93e-11;18!UBERON:0006914;3.08e-10;25!UBERON:0004807;4.31e-09;22!UBERON:0001949;4.31e-09;3!UBERON:0010523;9.62e-09;3!UBERON:0001915;9.62e-09;3!UBERON:0001982;9.62e-09;3!UBERON:0000485;4.53e-08;7|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.98e-18,3;UBERON:0002031,1.98e-18,3;UBERON:0007196,1.52e-13,15;UBERON:0001558,1.52e-13,15;UBERON:0000487,8.20e-12,22;UBERON:0002185,2.88e-11,5;UBERON:0004638,5.79e-11,18;UBERON:0001986,5.79e-11,18;UBERON:0004852,5.79e-11,18;UBERON:0006914,2.72e-10,25;UBERON:0001949,4.86e-09,3;UBERON:0010523,1.06e-08,3;UBERON:0001915,1.06e-08,3;UBERON:0001982,1.06e-08,3;UBERON:0004807,5.25e-07,28|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.619264493264304,3.67768489791571,3.91567694411725,1.84877005083394,0,0,0,0.553995408531877,0.401088894940283,2.17010870715852,0,0,0,0.290796477559129,0.755751887377619,0.242584061187816,0.232429036905685,0.822335776043652,0.309706370895104,0.28769239232215,0,0.236482229888585,0.344745680736619,0,0,0.376484679085209,1.09162460023138,0,0.918251677112708,0.962787081228281,0.639337125799041,0.659702600373432,0,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0.211255286311942,0,0,0.898629049171961,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0.348259474598534,0,0.238490624305342,0,0,0.596287222100115,1.72046919021225,1.73570250803797,0,1.25849830862972,0.275118041940067,0.208994966536811,0,0,0,1.20848795132744,4.56163263431108,0,0,0,0,0,0.112611480483322,0,1.89853131913626,0.549605231791222,9.22462922052443,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0.554128230968366,0,0,0,0.113432183160021,0,0,0,0,0,0,0.18611685633159,0,0.194874010322397,0,0,0,0,0.10075209822764,0,10.8226077771446,3.00020732649918,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,3.74935335947108,0.16798212819886,0,0,0,0,0.492663237895943,0.088048434013226,0,0,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0,0,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0.716243852959582,0,0.197030760201927,0,0.385029108839245,0,0,0,0,0,7.49007023947182,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0.391602314925481,0,0.413536052245775,1.07857100409308,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410635780069046,0.519254429183621,0.1162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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27434 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9185 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=26bp_to_ENST00000467607_5end | |||
|coexpression_cluster_id=C2897 | |||
|description=CAGE_peak_7_at_POLM_5end | |||
|id=chr7:44113679..44113690,- | |||
|ontology_enrichment_celltype=CL:0000766!1.39e-12!76;CL:0002057!1.98e-11!42;CL:0000860!3.35e-10!45;CL:0000094!1.16e-08!8;CL:0002202!4.22e-08!9;CL:0002632!4.22e-08!9;CL:0000839!1.08e-07!70;CL:0000557!1.75e-07!71;CL:0000071!2.97e-07!18;CL:0002546!2.97e-07!18;CL:0002194!3.10e-07!63;CL:0000576!3.10e-07!63;CL:0000040!3.10e-07!63;CL:0000559!3.10e-07!63;CL:0002009!8.26e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0002202;6.45e-23;9!CL:0002632;6.45e-23;9!CL:0002328;3.54e-18;3!CL:0002368;1.05e-15;13!CL:0000771;3.48e-13;2!CL:0000094;3.81e-12;8!CL:0000071;7.93e-11;18!CL:0002621;4.31e-09;3!CL:0000307;5.68e-09;3!CL:0000081;7.40e-09;11!CL:0000775;9.08e-09;3!CL:0002144;9.62e-09;3!CL:0002139;5.55e-08;24!CL:0002076;7.10e-08;42!CL:0000115;8.30e-08;36!CL:0002078;1.31e-07;45!CL:0000228;6.48e-07;1!CL:0002372;6.48e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,6.23e-23,9;CL:0002632,6.23e-23,9;CL:0002328,1.98e-18,3;CL:0002368,1.03e-15,13;CL:0000771,3.28e-13,2;CL:0000094,3.31e-12,8;CL:0000071,5.79e-11,18;CL:0002546,5.79e-11,18;CL:0002076,8.11e-10,42;CL:0002621,4.86e-09,3;CL:0000068,5.69e-09,3;CL:0000069,5.69e-09,3;CL:0000307,5.69e-09,3;CL:0000377,5.69e-09,3;CL:0000115,6.40e-09,36;CL:0000081,6.69e-09,11;CL:0000775,7.78e-09,3;CL:0002078,8.84e-09,45;CL:0002144,1.06e-08,3;CL:0000066,3.80e-08,253;CL:0002139,4.41e-08,24;CL:0002321,2.85e-07,250;CL:0000228,6.88e-07,1;CL:0002372,6.88e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002546;7.93e-11;18!CL:0000377;5.68e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;6.48e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,8.18e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001986!2.97e-07!18;UBERON:0004638!2.97e-07!18;UBERON:0004852!2.97e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;3.54e-18;3!UBERON:0002031;3.54e-18;3!UBERON:0000490;3.03e-15;33!UBERON:0007196;1.55e-13;15!UBERON:0001558;1.55e-13;15!UBERON:0000487;9.46e-12;22!UBERON:0002185;4.07e-11;5!UBERON:0004638;7.93e-11;18!UBERON:0001986;7.93e-11;18!UBERON:0004852;7.93e-11;18!UBERON:0006914;3.08e-10;25!UBERON:0004807;4.31e-09;22!UBERON:0001949;4.31e-09;3!UBERON:0010523;9.62e-09;3!UBERON:0001915;9.62e-09;3!UBERON:0001982;9.62e-09;3!UBERON:0000485;4.53e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.98e-18,3;UBERON:0002031,1.98e-18,3;UBERON:0007196,1.52e-13,15;UBERON:0001558,1.52e-13,15;UBERON:0000487,8.20e-12,22;UBERON:0002185,2.88e-11,5;UBERON:0004638,5.79e-11,18;UBERON:0001986,5.79e-11,18;UBERON:0004852,5.79e-11,18;UBERON:0006914,2.72e-10,25;UBERON:0001949,4.86e-09,3;UBERON:0010523,1.06e-08,3;UBERON:0001915,1.06e-08,3;UBERON:0001982,1.06e-08,3;UBERON:0004807,5.25e-07,28 | |||
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|short_description=p7@POLM | |||
}} |
Revision as of 01:18, 14 September 2013
Short description: | p7@POLM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_POLM_5end |
Coexpression cluster: | C2897_Gingival_Eosinophils_Tracheal_squamous_papillary_signet_Endothelial |
Association with transcript: | 26bp_to_ENST00000467607_5end |
EntrezGene: | POLM |
HGNC: | 9185 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 6.23e-23 | 9 |
epithelial cell of lower respiratory tract | 6.23e-23 | 9 |
bronchial epithelial cell | 1.98e-18 | 3 |
respiratory epithelial cell | 1.03e-15 | 13 |
eosinophil | 3.28e-13 | 2 |
granulocyte | 3.31e-12 | 8 |
blood vessel endothelial cell | 5.79e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.79e-11 | 18 |
endo-epithelial cell | 8.11e-10 | 42 |
gingival epithelial cell | 4.86e-09 | 3 |
duct epithelial cell | 5.69e-09 | 3 |
branched duct epithelial cell | 5.69e-09 | 3 |
tracheal epithelial cell | 5.69e-09 | 3 |
tracheoblast | 5.69e-09 | 3 |
endothelial cell | 6.40e-09 | 36 |
blood cell | 6.69e-09 | 11 |
neutrophil | 7.78e-09 | 3 |
meso-epithelial cell | 8.84e-09 | 45 |
capillary endothelial cell | 1.06e-08 | 3 |
epithelial cell | 3.80e-08 | 253 |
endothelial cell of vascular tree | 4.41e-08 | 24 |
embryonic cell | 2.85e-07 | 250 |
multinucleate cell | 6.88e-07 | 1 |
myotube | 6.88e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.98e-18 | 3 |
epithelium of bronchus | 1.98e-18 | 3 |
tracheobronchial tree | 1.52e-13 | 15 |
lower respiratory tract | 1.52e-13 | 15 |
simple squamous epithelium | 8.20e-12 | 22 |
bronchus | 2.88e-11 | 5 |
blood vessel endothelium | 5.79e-11 | 18 |
endothelium | 5.79e-11 | 18 |
cardiovascular system endothelium | 5.79e-11 | 18 |
squamous epithelium | 2.72e-10 | 25 |
gingival epithelium | 4.86e-09 | 3 |
microcirculatory vessel | 1.06e-08 | 3 |
endothelium of capillary | 1.06e-08 | 3 |
capillary | 1.06e-08 | 3 |
respiratory system epithelium | 5.25e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 8.18e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.