FFCP PHASE1:Hg19::chrX:86772707..86772724,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56062|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6355|TSSclassifier=S|UniProt=A5PKX1,Q9C0H6|association_with_transcript=0bp_to_NM_019117,NM_057162,uc004efa.2,uc004efb.2_5end|description=CAGE_peak_3_at_KLHL4_5end|id=chrX:86772707..86772724,+|ontology_enrichment_celltype=CL:0000213!6.88e-07!57;CL:0000215!6.88e-07!57|ontology_enrichment_celltype_v019=CL:0002144;2.41e-08;3!CL:0000064;6.87e-08;3!CL:0000067;6.87e-08;3!CL:0005012;6.87e-08;3!CL:0002304;6.87e-08;3|ontology_enrichment_celltype_v019_2=CL:0002144,2.63e-08,3;CL:0000064,4.97e-08,3;CL:0000067,4.97e-08,3;CL:0005012,4.97e-08,3;CL:0002304,4.97e-08,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.18e-21!82;UBERON:0005743!2.54e-20!86;UBERON:0000955!1.23e-18!69;UBERON:0006238!1.23e-18!69;UBERON:0003075!3.68e-18!86;UBERON:0007284!3.68e-18!86;UBERON:0000073!5.40e-18!94;UBERON:0001016!5.40e-18!94;UBERON:0002616!9.78e-18!59;UBERON:0002346!5.92e-17!90;UBERON:0001049!1.13e-14!57;UBERON:0005068!1.13e-14!57;UBERON:0006241!1.13e-14!57;UBERON:0007135!1.13e-14!57;UBERON:0003056!1.14e-14!61;UBERON:0007023!3.39e-14!115;UBERON:0000153!4.28e-14!129;UBERON:0007811!4.28e-14!129;UBERON:0003080!4.91e-14!42;UBERON:0004121!8.91e-14!169;UBERON:0002780!1.48e-13!41;UBERON:0001890!1.48e-13!41;UBERON:0006240!1.48e-13!41;UBERON:0000477!2.46e-13!286;UBERON:0000924!3.40e-13!173;UBERON:0006601!3.40e-13!173;UBERON:0001893!3.98e-13!34;UBERON:0002020!4.41e-13!34;UBERON:0003528!4.41e-13!34;UBERON:0000033!5.90e-13!123;UBERON:0002791!1.80e-12!33;UBERON:0001869!1.96e-12!32;UBERON:0000119!2.22e-11!312;UBERON:0000483!7.16e-11!309;UBERON:0004111!7.43e-10!241;UBERON:0001950!1.98e-09!20;UBERON:0000025!2.48e-09!194;UBERON:0000956!3.68e-09!25;UBERON:0000203!3.68e-09!25;UBERON:0002619!4.37e-09!22;UBERON:0000481!2.28e-07!347|ontology_enrichment_uberon_v019=UBERON:0006876;9.67e-13;11!UBERON:0001950;2.05e-10;20!UBERON:0000488;3.30e-10;4!UBERON:0007625;9.88e-10;11!UBERON:0002619;2.68e-09;22!UBERON:0010523;2.41e-08;3!UBERON:0001915;2.41e-08;3!UBERON:0001982;2.41e-08;3!UBERON:0000956;5.98e-08;25!UBERON:0000203;5.98e-08;25!UBERON:0001778;6.87e-08;3!UBERON:0001775;6.87e-08;3!UBERON:0005284;1.09e-07;5!UBERON:0001801;2.19e-07;14!UBERON:0002203;9.28e-07;6!UBERON:0001768;9.28e-07;6!UBERON:0002200;9.28e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0006876,7.55e-13,11;UBERON:0003056,1.65e-10,61;UBERON:0000488,2.40e-10,4;UBERON:0001950,3.83e-10,20;UBERON:0001017,5.27e-10,81;UBERON:0007625,9.07e-10,11;UBERON:0002619,4.70e-09,22;UBERON:0001016,2.01e-08,89;UBERON:0010523,2.63e-08,3;UBERON:0001915,2.63e-08,3;UBERON:0001982,2.63e-08,3;UBERON:0001778,4.97e-08,3;UBERON:0001775,4.97e-08,3;UBERON:0000956,9.67e-08,25;UBERON:0000203,9.67e-08,25;UBERON:0005284,1.06e-07,5;UBERON:0000955,1.51e-07,68;UBERON:0006238,1.51e-07,68;UBERON:0001801,2.05e-07,14;UBERON:0002780,4.91e-07,41;UBERON:0001890,4.91e-07,41;UBERON:0003080,4.91e-07,41;UBERON:0006240,4.91e-07,41;UBERON:0002203,7.55e-07,6;UBERON:0001768,7.55e-07,6;UBERON:0002200,7.55e-07,6;UBERON:0001869,8.83e-07,32|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0.492484232307152,0.612002073732759,0.313454721478088,0.286235987131057,0.821246550437305,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0.201606743224732,0,0,4.87613732627923,0,0.383587685530591,0,0,0,0,0,3.11964896641424,4.87804674417641,1.66886092816939,0.851363990735132,0,0,0,0,0,0,0,0,0.79504962946682,0,1.04142150482278,0,0,0.550236083880135,0,0.258416759169329,0.35576626268671,5.02080919147005,2.01414658554573,8.36299316290364,3.90499292077071,0,0,1.42879565254528,0.898117490504679,0.788280363383256,0,0.949265659568129,0.183201743930407,0,0,0,0,0,1.19168262731897,0.573673241497627,0,0.560677600142307,0,0.24666754841716,0.622422070799533,0.67355336034844,0.163461903113459,1.05950199351452,4.60940739583999,0,0,0,0,0.117434498643765,0.323745888736263,0,0,0.122834317311768,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.340296549480063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.795178609928912,0.232387885739037,0.621966330092223,0.504641701751257,1.82488679537915,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.220587945464788,0.435758888184812,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,5.31860211925429,0,0,0,0.0925884451585296,0.651616610620649,0,1.44331342025273,1.15930404975077,7.27933904262094,1.73239737313289,1.38895653772983,3.61482889245737,0,0,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.784917590417525,0,2.3468251462704,0.387815147273333,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56062 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6355 | |||
|TSSclassifier=S | |||
|UniProt=A5PKX1,Q9C0H6 | |||
|association_with_transcript=0bp_to_NM_019117,NM_057162,uc004efa.2,uc004efb.2_5end | |||
|description=CAGE_peak_3_at_KLHL4_5end | |||
|id=chrX:86772707..86772724,+ | |||
|ontology_enrichment_celltype=CL:0000213!6.88e-07!57;CL:0000215!6.88e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002144;2.41e-08;3!CL:0000064;6.87e-08;3!CL:0000067;6.87e-08;3!CL:0005012;6.87e-08;3!CL:0002304;6.87e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,2.63e-08,3;CL:0000064,4.97e-08,3;CL:0000067,4.97e-08,3;CL:0005012,4.97e-08,3;CL:0002304,4.97e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.18e-21!82;UBERON:0005743!2.54e-20!86;UBERON:0000955!1.23e-18!69;UBERON:0006238!1.23e-18!69;UBERON:0003075!3.68e-18!86;UBERON:0007284!3.68e-18!86;UBERON:0000073!5.40e-18!94;UBERON:0001016!5.40e-18!94;UBERON:0002616!9.78e-18!59;UBERON:0002346!5.92e-17!90;UBERON:0001049!1.13e-14!57;UBERON:0005068!1.13e-14!57;UBERON:0006241!1.13e-14!57;UBERON:0007135!1.13e-14!57;UBERON:0003056!1.14e-14!61;UBERON:0007023!3.39e-14!115;UBERON:0000153!4.28e-14!129;UBERON:0007811!4.28e-14!129;UBERON:0003080!4.91e-14!42;UBERON:0004121!8.91e-14!169;UBERON:0002780!1.48e-13!41;UBERON:0001890!1.48e-13!41;UBERON:0006240!1.48e-13!41;UBERON:0000477!2.46e-13!286;UBERON:0000924!3.40e-13!173;UBERON:0006601!3.40e-13!173;UBERON:0001893!3.98e-13!34;UBERON:0002020!4.41e-13!34;UBERON:0003528!4.41e-13!34;UBERON:0000033!5.90e-13!123;UBERON:0002791!1.80e-12!33;UBERON:0001869!1.96e-12!32;UBERON:0000119!2.22e-11!312;UBERON:0000483!7.16e-11!309;UBERON:0004111!7.43e-10!241;UBERON:0001950!1.98e-09!20;UBERON:0000025!2.48e-09!194;UBERON:0000956!3.68e-09!25;UBERON:0000203!3.68e-09!25;UBERON:0002619!4.37e-09!22;UBERON:0000481!2.28e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;9.67e-13;11!UBERON:0001950;2.05e-10;20!UBERON:0000488;3.30e-10;4!UBERON:0007625;9.88e-10;11!UBERON:0002619;2.68e-09;22!UBERON:0010523;2.41e-08;3!UBERON:0001915;2.41e-08;3!UBERON:0001982;2.41e-08;3!UBERON:0000956;5.98e-08;25!UBERON:0000203;5.98e-08;25!UBERON:0001778;6.87e-08;3!UBERON:0001775;6.87e-08;3!UBERON:0005284;1.09e-07;5!UBERON:0001801;2.19e-07;14!UBERON:0002203;9.28e-07;6!UBERON:0001768;9.28e-07;6!UBERON:0002200;9.28e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,7.55e-13,11;UBERON:0003056,1.65e-10,61;UBERON:0000488,2.40e-10,4;UBERON:0001950,3.83e-10,20;UBERON:0001017,5.27e-10,81;UBERON:0007625,9.07e-10,11;UBERON:0002619,4.70e-09,22;UBERON:0001016,2.01e-08,89;UBERON:0010523,2.63e-08,3;UBERON:0001915,2.63e-08,3;UBERON:0001982,2.63e-08,3;UBERON:0001778,4.97e-08,3;UBERON:0001775,4.97e-08,3;UBERON:0000956,9.67e-08,25;UBERON:0000203,9.67e-08,25;UBERON:0005284,1.06e-07,5;UBERON:0000955,1.51e-07,68;UBERON:0006238,1.51e-07,68;UBERON:0001801,2.05e-07,14;UBERON:0002780,4.91e-07,41;UBERON:0001890,4.91e-07,41;UBERON:0003080,4.91e-07,41;UBERON:0006240,4.91e-07,41;UBERON:0002203,7.55e-07,6;UBERON:0001768,7.55e-07,6;UBERON:0002200,7.55e-07,6;UBERON:0001869,8.83e-07,32 | |||
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| |||
|short_description=p3@KLHL4 | |||
}} |
Revision as of 12:38, 14 September 2013
Short description: | p3@KLHL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_KLHL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_019117, NM_057162, uc004efa.2, uc004efb.2_5end |
EntrezGene: | KLHL4 |
HGNC: | 6355 |
UniProt: | A5PKX1Q9C0H6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 2.63e-08 | 3 |
ciliated cell | 4.97e-08 | 3 |
ciliated epithelial cell | 4.97e-08 | 3 |
multi-ciliated epithelial cell | 4.97e-08 | 3 |
non-pigmented ciliary epithelial cell | 4.97e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 7.55e-13 | 11 |
pre-chordal neural plate | 1.65e-10 | 61 |
atypical epithelium | 2.40e-10 | 4 |
neocortex | 3.83e-10 | 20 |
central nervous system | 5.27e-10 | 81 |
pigment epithelium of eye | 9.07e-10 | 11 |
regional part of cerebral cortex | 4.70e-09 | 22 |
nervous system | 2.01e-08 | 89 |
microcirculatory vessel | 2.63e-08 | 3 |
endothelium of capillary | 2.63e-08 | 3 |
capillary | 2.63e-08 | 3 |
ciliary epithelium | 4.97e-08 | 3 |
ciliary body | 4.97e-08 | 3 |
cerebral cortex | 9.67e-08 | 25 |
pallium | 9.67e-08 | 25 |
brain vasculature | 1.06e-07 | 5 |
brain | 1.51e-07 | 68 |
future brain | 1.51e-07 | 68 |
anterior segment of eyeball | 2.05e-07 | 14 |
regional part of forebrain | 4.91e-07 | 41 |
forebrain | 4.91e-07 | 41 |
anterior neural tube | 4.91e-07 | 41 |
future forebrain | 4.91e-07 | 41 |
vasculature of eye | 7.55e-07 | 6 |
uvea | 7.55e-07 | 6 |
vasculature of head | 7.55e-07 | 6 |
cerebral hemisphere | 8.83e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.