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MCL coexpression mm9:220: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!2.23e-11!333;UBERON:0000073!4.42e-07!54;UBERON:0010314!5.75e-07!92;UBERON:0001049!8.08e-07!52;UBERON:0005068!8.08e-07!52;UBERON:0006241!8.08e-07!52;UBERON:0007135!8.08e-07!52
}}

Latest revision as of 14:54, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr12:110783017..110783048,+p@chr12:110783017..110783048
+
Mm9::chr12:110783142..110783150,+p15@Meg3
Mm9::chr12:110783406..110783429,+p9@Meg3
Mm9::chr12:110783600..110783653,+p1@Meg3
Mm9::chr12:110783721..110783736,+p5@Meg3
Mm9::chr12:110783784..110783816,+p3@Meg3
Mm9::chr12:110783946..110783969,+p2@Meg3
Mm9::chr12:110783992..110784005,+p7@Meg3
Mm9::chr12:110784019..110784028,-p@chr12:110784019..110784028
-
Mm9::chr12:110784108..110784116,-p@chr12:110784108..110784116
-
Mm9::chr12:110784152..110784166,+p12@Meg3
Mm9::chr12:110784282..110784301,+p10@Meg3
Mm9::chr12:110784543..110784608,+p8@Meg3
Mm9::chr12:110785268..110785296,+p@chr12:110785268..110785296
+
Mm9::chr12:110785322..110785333,+p@chr12:110785322..110785333
+
Mm9::chr12:110785653..110785665,+p@chr12:110785653..110785665
+
Mm9::chr12:110786047..110786060,+p@chr12:110786047..110786060
+
Mm9::chr12:110787490..110787511,+p2@ENSMUST00000150851
Mm9::chr12:110809885..110809912,+p1@Mir673
Mm9::chr12:110819723..110819742,+p@chr12:110819723..110819742
+
Mm9::chr12:110819923..110819945,+p@chr12:110819923..110819945
+
Mm9::chr12:110829110..110829128,+p@chr12:110829110..110829128
+
Mm9::chr12:110833597..110833601,+p1@Mir136
Mm9::chr12:110835696..110835706,+p@chr12:110835696..110835706
+
Mm9::chr12:110842125..110842130,+p1@Rian
Mm9::chr12:110847906..110847910,+p@chr12:110847906..110847910
+
Mm9::chr12:110867282..110867293,+p@chr12:110867282..110867293
+
Mm9::chr12:110868303..110868316,+p@chr12:110868303..110868316
+
Mm9::chr12:110874707..110874739,+p@chr12:110874707..110874739
+
Mm9::chr12:110881561..110881567,+p@chr12:110881561..110881567
+
Mm9::chr12:110884131..110884145,+p4@Rian
Mm9::chr12:110884325..110884344,+p1@ENSMUST00000122742
Mm9::chr12:110888366..110888371,+p@chr12:110888366..110888371
+
Mm9::chr12:110888871..110888885,+p1@AF357359
Mm9::chr12:110889187..110889207,+p@chr12:110889187..110889207
+
Mm9::chr12:110945007..110945022,+p@chr12:110945007..110945022
+
Mm9::chr12:110957029..110957032,+p@chr12:110957029..110957032
+
Mm9::chr12:110973179..110973183,+p1@Mirg
Mm9::chr12:110981997..110981999,+p1@Mir410
Mm9::chr4:154528534..154528547,-p@chr4:154528534..154528547
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.17.43491e-06
MA0004.10.175855
MA0006.10.13339
MA0007.10.658457
MA0009.13.96548
MA0014.19.66333e-06
MA0017.10.166299
MA0019.10.497064
MA0024.10.256408
MA0025.10.472823
MA0027.11.82121
MA0028.10.0536096
MA0029.11.25715
MA0030.10.245792
MA0031.10.221516
MA0038.10.105238
MA0040.10.29711
MA0041.18.76297
MA0042.16.21606
MA0043.10.361422
MA0046.10.314603
MA0048.10.00157088
MA0050.10.816849
MA0051.10.109661
MA0052.10.303096
MA0055.10.000904837
MA0056.10
MA0057.10.0401771
MA0058.10.0213244
MA0059.10.251616
MA0060.10.248105
MA0061.10.178752
MA0063.10
MA0066.10.673569
MA0067.10.568484
MA0068.10.720463
MA0069.10.303349
MA0070.10.29615
MA0071.10.470038
MA0072.10.289901
MA0073.19.78271
MA0074.10.283849
MA0076.10.0161593
MA0077.11.3795
MA0078.13.25311
MA0081.10.12094
MA0083.10.360799
MA0084.10.868194
MA0087.10.873394
MA0088.10.39035
MA0089.10
MA0090.10.143477
MA0091.10.0506469
MA0092.10.14376
MA0093.10.156192
MA0095.10
MA0098.10
MA0100.10.0784991
MA0101.10.109484
MA0103.10.35556
MA0105.10.100614
MA0106.10.130893
MA0107.10.341533
MA0108.20.179719
MA0109.10
MA0111.10.0401376
MA0113.10.371139
MA0114.10.17479
MA0115.10.363622
MA0116.10.133148
MA0117.10.33849
MA0119.10.109947
MA0122.10.353887
MA0124.10.522168
MA0125.11.16201
MA0130.10
MA0131.10.163115
MA0132.10
MA0133.10
MA0135.11.79145
MA0136.10.0924202
MA0139.10.0103686
MA0140.10.569543
MA0141.10.0181668
MA0142.10.608203
MA0143.10.393238
MA0144.10.32677
MA0145.10.0176945
MA0146.10.00140485
MA0147.10.201588
MA0148.10.0516927
MA0149.10.0271745
MA0062.20.018869
MA0035.20.275446
MA0039.20.0357918
MA0138.20.158423
MA0002.20.183966
MA0137.20.394957
MA0104.20.013958
MA0047.20.104862
MA0112.20.318815
MA0065.20.0784483
MA0150.10.0416264
MA0151.10
MA0152.10.696832
MA0153.10.403751
MA0154.10.0491733
MA0155.10.276209
MA0156.10.372842
MA0157.10.191171
MA0158.10
MA0159.10.220195
MA0160.10.758101
MA0161.10
MA0162.17.53189e-05
MA0163.10.610563
MA0164.10.308781
MA0080.20.0659289
MA0018.20.0971053
MA0099.20.469638
MA0079.20.141515
MA0102.20.917775
MA0258.10.683745
MA0259.10.0275381
MA0442.10
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