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MCL coexpression mm9:880: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0.0673261272347292,0.310251814782377,0.373830726051733,0.372219639634769,0.477639625998089,0.275816095046897,0.243824161201591,0.840670257101249,0.625007919317286,0.593641272231686,0.149124601465161,0.142931294094064,0.715477906957088,0.757449304850062,0,0,0,0.190346765729239,0.124366004569349,0.280645949882982,0.0354470656487682,0.0771724009446794,0.100783889465809,0,0.0896964873768703,0.306861404896124,0.372395385528992,0.214410414211906,0,0,0,0.284781749193993,0.139907918585775,0,0.453029194799194,0.28159809358022,0.482134874802894,0.490331918007296,0.329719243347044,0.292296750326136,0.977193866563649,0.583191281241452,0.29469118667486,0,0,0,0,0,0,0,0,0,0.548061491327638,0.783727468163968,0.60572665120215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00223240530765178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00363705266881902,0,0,0,0.898510454779608,0.0665239223853835,0,0,0,0,0,0,0,0,0.105143777524182,0,0,0,0.0403905917578492,0,0,0,0.0747376408528189,0,0,0,0,0,0,0,0.0189499370330392,0,0,0,0,0,0,0,0,0,0.264512262907024,0.464004330576861,0.290478251366889,0,0,0,0,0,0,0,0,0,0,0,0.00129570394400734,0,0,0.0609639314262262,0,0.00090977903449941,0.0194494484574599,0,0,0,0,0,0,0,0.0065682988860032,0,0.115506975370087,0.307365864513145,0.231596303990951,0,0,0,0,0,0,0,0,0.0203083170630638,0,0,0,0,0,0,0,0.0153726394341331,0,0,0,0,0,0,0,0.0142764942886584,0,0,0,0,0,0,0,0,0.0139991848137575,0.0134468592219902,0,0.0352595375909913,0,0.0294389011296462,0,0,0,0,0,0,0.00371192033663112,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0,0,0.00836294688799935,0,0,0,0,0,0,0,0.0601896789967473,0,0,0,0,0,0,0,0,0,0,0.0847275925579778,0,0.0873549591356574,0,0.0485422419177016,0,0,0,0,0,0.0327687501780757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0106855845036315,0.0264159477773836,0.0169029586277225,0,0.0712812415377886,0.0661577744756082,0.181270460542485,0.0457757482999958,0,0,0.0662835200988411,0.0325029563895826,0.0254340553719351,0.0244872863598586,0.0660055475634404,0,0,0.0342545026818701,0,0,0,0.0063402596309745,0,0.246216693243129,0.392432890643082,0.278076890983579,0,0.006619118465097,0,0,0,0,0.00220531450792572,0,0,0,0,0,0.0121846610289483,0,0.0416380340107183,0.0292089615703474,0,0,0.0249890465554776,0,0,0,0.119259559192106,0,0,0,0,0.0726545746805335,0.0714261876104137,0.0598244186619439,0.0554505633970432,0.0616083799021044,0,0.0621253626317597,0.115084598615781,0.0480053095083702,0,0,0.0517244831421462,0,0,0,0,0.0513693042436108,0,0,0,0,0,0.088043925158804,0,0,0,0,0,0.0428854115575944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00925390767473115,0,0,0,0,0,0,0,0,0,0,0.017637724668944,0,0,0,0,0,0,0,0,0,0,0,0,0.012741782508947,0.0110775109727481,0
|gostat_on_MCL_coexpression=
}}

Latest revision as of 16:02, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:84647881..84647906,+p@chr10:84647881..84647906
+
Mm9::chr14:76234760..76234774,+p@chr14:76234760..76234774
+
Mm9::chr16:91647874..91647895,-p@chr16:91647874..91647895
-
Mm9::chr2:60048576..60048591,-p@chr2:60048576..60048591
-
Mm9::chr3:135100948..135100970,-p1@ENSMUST00000169027
Mm9::chr6:145288802..145288816,+p@chr6:145288802..145288816
+
Mm9::chr8:73222233..73222263,-p@chr8:73222233..73222263
-
Mm9::chr8:87504086..87504096,+p@chr8:87504086..87504096
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell1.81e-1232
hematopoietic oligopotent progenitor cell1.81e-1232
hematopoietic stem cell1.81e-1232
angioblastic mesenchymal cell1.81e-1232
hematopoietic multipotent progenitor cell1.81e-1232
lymphoid lineage restricted progenitor cell3.30e-1212
nucleate cell2.53e-1116
T cell3.16e-1111
pro-T cell3.16e-1111
lymphocyte6.39e-1113
common lymphoid progenitor6.39e-1113
mature alpha-beta T cell4.62e-109
alpha-beta T cell4.62e-109
immature T cell4.62e-109
mature T cell4.62e-109
immature alpha-beta T cell4.62e-109
intestinal epithelial cell2.66e-099
epithelial cell of alimentary canal2.66e-099
CD4-positive, alpha-beta T cell4.69e-098
hematopoietic lineage restricted progenitor cell8.64e-0925
connective tissue cell5.37e-0846
mesenchymal cell5.37e-0846
leukocyte2.39e-0717
nongranular leukocyte2.39e-0717
columnar/cuboidal epithelial cell2.98e-077
somatic cell3.34e-07118
epithelial cell3.72e-0725
thymocyte5.89e-076
double negative thymocyte5.89e-076
naive T cell5.89e-076
double-positive, alpha-beta thymocyte5.89e-076
CD4-positive, alpha-beta thymocyte5.89e-076
naive thymus-derived CD4-positive, alpha-beta T cell5.89e-076
DN4 thymocyte5.89e-076
DN1 thymic pro-T cell5.89e-076
DN2 thymocyte5.89e-076
DN3 thymocyte5.89e-076
immature single positive thymocyte5.89e-076
early T lineage precursor5.89e-076
mature CD4 single-positive thymocyte5.89e-076
resting double-positive thymocyte5.89e-076
double-positive blast5.89e-076
CD69-positive double-positive thymocyte5.89e-076
CD69-positive, CD4-positive single-positive thymocyte5.89e-076
CD4-positive, CD8-intermediate double-positive thymocyte5.89e-076
CD24-positive, CD4 single-positive thymocyte5.89e-076

Uber Anatomy
Ontology termp-valuen
simple columnar epithelium1.92e-1011
epithelium of mucosa2.66e-099
gastrointestinal system epithelium2.66e-099
intestinal epithelium2.66e-099
connective tissue5.37e-0846


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.602903
MA0004.10.434673
MA0006.10.747445
MA0007.10.419994
MA0009.10.870101
MA0014.10.548455
MA0017.10.296816
MA0019.10.688051
MA0024.10.826339
MA0025.11.10341
MA0027.12.51754
MA0028.10.281528
MA0029.10.804619
MA0030.10.811181
MA0031.10.775627
MA0038.10.577528
MA0040.10.882616
MA0041.10.360875
MA0042.10.348174
MA0043.10.966833
MA0046.10.906029
MA0048.10.102483
MA0050.10.472794
MA0051.10.586414
MA0052.10.890676
MA0055.10.0283571
MA0056.10
MA0057.11.58436
MA0058.10.90507
MA0059.10.353484
MA0060.12.42557
MA0061.11.19505
MA0063.10
MA0066.10.566617
MA0067.11.21448
MA0068.10.0965831
MA0069.10.891016
MA0070.10.881319
MA0071.10.471969
MA0072.10.872842
MA0073.10.082812
MA0074.10.531046
MA0076.10.315013
MA0077.10.851175
MA0078.10.61926
MA0081.10.375851
MA0083.12.21686
MA0084.11.54225
MA0087.10.922929
MA0088.10.49616
MA0089.10
MA0090.10.401197
MA0091.10.447561
MA0092.10.401504
MA0093.10.787675
MA0095.10
MA0098.10
MA0100.11.29122
MA0101.10.950493
MA0103.10.307078
MA0105.11.33477
MA0106.10.626997
MA0107.12.2558
MA0108.20.710846
MA0109.10
MA0111.10.415012
MA0113.10.598933
MA0114.10.222763
MA0115.10.969632
MA0116.10.747001
MA0117.10.937363
MA0119.10.362692
MA0122.10.957212
MA0124.11.16127
MA0125.11.0872
MA0130.10
MA0131.10.683521
MA0132.10
MA0133.10
MA0135.11.00325
MA0136.10.550755
MA0139.10.169849
MA0140.10.519484
MA0141.10.325895
MA0142.10.761136
MA0143.10.615203
MA0144.10.640537
MA0145.10.527241
MA0146.10.636109
MA0147.10.666991
MA0148.10.450593
MA0149.10.367458
MA0062.20.426733
MA0035.20.524137
MA0039.21.6915
MA0138.20.675599
MA0002.20.172399
MA0137.20.32312
MA0104.21.03907
MA0047.20.576767
MA0112.20.2464
MA0065.20.0704227
MA0150.10.419883
MA0151.10
MA0152.10.576873
MA0153.11.01988
MA0154.10.677425
MA0155.10.275377
MA0156.10.314185
MA0157.10.729116
MA0158.10
MA0159.10.688775
MA0160.10.453546
MA0161.10
MA0162.10.439322
MA0163.10.212034
MA0164.10.551114
MA0080.20.302064
MA0018.20.560731
MA0099.20.669311
MA0079.22.0883
MA0102.21.59466
MA0258.10.210437
MA0259.10.643936
MA0442.10
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