FFCP PHASE1:Hg19::chr1:183212941..183212952,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_at_chr1:183212941..183212952,+ | |||
|id=chr1:183212941..183212952,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.73e-22!43;CL:0000066!5.25e-19!254;CL:0002368!3.49e-15!13;CL:0000223!4.83e-15!59;CL:0002621!6.60e-11!3;CL:0002251!1.44e-10!21;CL:0002159!6.45e-09!13;CL:0000244!1.34e-08!4;CL:0000731!1.34e-08!4;CL:0002327!4.02e-08!4;CL:0002536!2.37e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000244;2.02e-27;4!CL:0000731;2.02e-27;4!CL:0002159;7.76e-21;14!CL:0002166;1.17e-16;3!CL:0002621;1.55e-16;3!CL:0002368;1.24e-14;13!CL:0002076;2.32e-12;42!CL:0000362;2.76e-12;9!CL:0000312;3.58e-10;5!CL:0000240;1.26e-08;6!CL:0000311;1.26e-08;6!CL:0000079;1.26e-08;6!CL:0000237;1.26e-08;6!CL:0002077;1.63e-07;34!CL:0000317;2.50e-07;2!CL:1000448;2.50e-07;2!CL:0002308;2.50e-07;2!CL:0002140;2.50e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,2.21e-27,4;CL:0000731,2.21e-27,4;CL:0002159,7.00e-21,14;CL:0002166,1.00e-16,3;CL:0002621,1.08e-16,3;CL:0002368,1.33e-14,13;CL:0002076,4.27e-13,42;CL:0000362,2.71e-12,9;CL:0000066,2.11e-11,253;CL:0000312,3.59e-10,5;CL:0000223,2.59e-09,58;CL:0000240,1.26e-08,6;CL:0000311,1.26e-08,6;CL:0000079,1.26e-08,6;CL:0000237,1.26e-08,6;CL:0000036,1.26e-08,6;CL:0000357,1.26e-08,6;CL:0000114,1.26e-08,6;CL:0002077,1.43e-08,34;CL:0000317,2.43e-07,2;CL:1000448,2.43e-07,2;CL:0002308,2.43e-07,2;CL:0002140,2.43e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000357;1.26e-08;6!CL:0000114;1.26e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;4.55e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,4.98e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000365!5.70e-11!5;UBERON:0001949!6.60e-11!3;UBERON:0005910!3.87e-09!6;UBERON:0001911!4.02e-08!4;UBERON:0005333!4.02e-08!4;UBERON:0008425!4.02e-08!4;UBERON:0005311!4.02e-08!4;UBERON:0000161!4.71e-07!35;UBERON:0004119!5.90e-07!169;UBERON:0000925!5.90e-07!169;UBERON:0006595!5.90e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;1.49e-24;12!UBERON:0000365;4.42e-22;5!UBERON:0005910;1.63e-18;6!UBERON:0001949;1.55e-16;3!UBERON:0001708;9.75e-13;4!UBERON:0008895;9.75e-13;4!UBERON:0011159;2.25e-10;5!UBERON:0010371;4.96e-09;31!UBERON:0003929;1.31e-07;7!UBERON:0001003;1.38e-07;15!UBERON:0007376;1.38e-07;15!UBERON:0002419;2.50e-07;2!UBERON:0007771;2.50e-07;2!UBERON:0003297;2.50e-07;2!UBERON:0001821;2.50e-07;2!UBERON:0003487;2.50e-07;2!UBERON:0001820;2.50e-07;2!UBERON:0003350;9.25e-07;8!UBERON:0001828;9.25e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.76e-22,5;UBERON:0005910,1.73e-18,6;UBERON:0001949,1.08e-16,3;UBERON:0001708,8.67e-13,4;UBERON:0008895,8.67e-13,4;UBERON:0011159,2.04e-10,5;UBERON:0010188,7.93e-09,6;UBERON:0002539,7.93e-09,6;UBERON:0008816,7.93e-09,6;UBERON:0001003,1.37e-07,15;UBERON:0007376,1.37e-07,15;UBERON:0007383,1.37e-07,15;UBERON:0002419,2.43e-07,2;UBERON:0007771,2.43e-07,2;UBERON:0003297,2.43e-07,2;UBERON:0001821,2.43e-07,2;UBERON:0003487,2.43e-07,2;UBERON:0001820,2.43e-07,2;UBERON:0005089,2.43e-07,2;UBERON:0005088,2.43e-07,2;UBERON:0003350,8.12e-07,8;UBERON:0001828,8.12e-07,8;UBERON:0003102,9.40e-07,99 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.873765488520689,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0.252433774244115,0,0,0,0,0,2.70565194428616,1.90922284413584,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31700342490351,0,1.3068766413512,0.648119116109707,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,3.19166043577833,1.41775097242386,0.806026704325635,1.16253575405585,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21063587636898,0.920809889358963,0,0,0,0.902399225814824,0.462092022626489,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,3.90036147621913,0,0,0,0,0,0,0,0,0,2.97512847649761,1.34533047155574,2.04180339991335,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,0,1.08890984861323,0,2.15252686335615,0,2.21715076768338,5.05391480455311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0,0,0.0897576444097721,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391969589657511,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0.414706207840855,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0,0,0.591424344868181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:183212941..183212952,+ | |||
}} |
Revision as of 22:40, 10 January 2014
Short description: | p@chr1:183212941..183212952, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:183212941..183212952, + |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 2.21e-27 | 4 |
urothelial cell | 2.21e-27 | 4 |
general ecto-epithelial cell | 7.00e-21 | 14 |
epithelial cell of Malassez | 1.00e-16 | 3 |
gingival epithelial cell | 1.08e-16 | 3 |
respiratory epithelial cell | 1.33e-14 | 13 |
endo-epithelial cell | 4.27e-13 | 42 |
epidermal cell | 2.71e-12 | 9 |
epithelial cell | 2.11e-11 | 253 |
keratinocyte | 3.59e-10 | 5 |
endodermal cell | 2.59e-09 | 58 |
stratified squamous epithelial cell | 1.26e-08 | 6 |
keratin accumulating cell | 1.26e-08 | 6 |
stratified epithelial cell | 1.26e-08 | 6 |
keratinizing barrier epithelial cell | 1.26e-08 | 6 |
epithelial fate stem cell | 1.26e-08 | 6 |
stratified epithelial stem cell | 1.26e-08 | 6 |
surface ectodermal cell | 1.26e-08 | 6 |
ecto-epithelial cell | 1.43e-08 | 34 |
sebum secreting cell | 2.43e-07 | 2 |
epithelial cell of sweat gland | 2.43e-07 | 2 |
epithelial cell of skin gland | 2.43e-07 | 2 |
acinar cell of sebaceous gland | 2.43e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
urothelium | 4.76e-22 | 5 |
transitional epithelium | 1.73e-18 | 6 |
gingival epithelium | 1.08e-16 | 3 |
jaw skeleton | 8.67e-13 | 4 |
splanchnocranium | 8.67e-13 | 4 |
primary subdivision of cranial skeletal system | 2.04e-10 | 5 |
protuberance | 7.93e-09 | 6 |
pharyngeal arch | 7.93e-09 | 6 |
embryonic head | 7.93e-09 | 6 |
skin epidermis | 1.37e-07 | 15 |
outer epithelium | 1.37e-07 | 15 |
enveloping layer of ectoderm | 1.37e-07 | 15 |
skin gland | 2.43e-07 | 2 |
epidermis gland | 2.43e-07 | 2 |
gland of integumental system | 2.43e-07 | 2 |
sebaceous gland | 2.43e-07 | 2 |
skin sebaceous gland | 2.43e-07 | 2 |
sweat gland | 2.43e-07 | 2 |
sweat gland placode | 2.43e-07 | 2 |
sebaceous gland placode | 2.43e-07 | 2 |
epithelium of mucosa | 8.12e-07 | 8 |
gingiva | 8.12e-07 | 8 |
surface structure | 9.40e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 4.98e-07 | 2 |