FFCP PHASE1:Hg19::chr13:37446984..37446995,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4093 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=6774 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-142bp_to_AK311686_5end | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_13_at_SMAD9_5end | |||
|id=chr13:37446984..37446995,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006298;1.84e-34;1!UBERON:0008801;3.61e-34;1!UBERON:0007297;1.07e-17;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.55e-33!115;UBERON:0001049!9.27e-19!57;UBERON:0005068!9.27e-19!57;UBERON:0006241!9.27e-19!57;UBERON:0007135!9.27e-19!57;UBERON:0005743!1.21e-18!86;UBERON:0002346!6.38e-18!90;UBERON:0000073!2.42e-17!94;UBERON:0001016!2.42e-17!94;UBERON:0001017!4.27e-17!82;UBERON:0003075!3.79e-16!86;UBERON:0007284!3.79e-16!86;UBERON:0002780!3.31e-15!41;UBERON:0001890!3.31e-15!41;UBERON:0006240!3.31e-15!41;UBERON:0003080!9.79e-15!42;UBERON:0000033!1.07e-14!123;UBERON:0000153!1.21e-14!129;UBERON:0007811!1.21e-14!129;UBERON:0002616!1.43e-14!59;UBERON:0000924!1.75e-14!173;UBERON:0006601!1.75e-14!173;UBERON:0000955!8.01e-14!69;UBERON:0006238!8.01e-14!69;UBERON:0004121!4.34e-13!169;UBERON:0003056!2.83e-12!61;UBERON:0002619!8.99e-12!22;UBERON:0002020!1.78e-11!34;UBERON:0003528!1.78e-11!34;UBERON:0001893!4.40e-11!34;UBERON:0001950!9.51e-11!20;UBERON:0000956!4.25e-10!25;UBERON:0000203!4.25e-10!25;UBERON:0002791!5.39e-10!33;UBERON:0000200!4.91e-09!6;UBERON:0006947!9.21e-09!3;UBERON:0004054!9.21e-09!3;UBERON:0001869!1.05e-08!32;UBERON:0006331!1.68e-08!3;UBERON:0000988!1.81e-08!3;UBERON:0001872!9.16e-08!5;UBERON:0002771!1.48e-07!3;UBERON:0002298!1.73e-07!8;UBERON:0001044!2.10e-07!6;UBERON:0003293!2.10e-07!6;UBERON:0003294!2.10e-07!6;UBERON:0010047!2.10e-07!6;UBERON:0000167!2.10e-07!6;UBERON:0001871!7.51e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.04e-66;2!UBERON:0001044;3.84e-50;6!UBERON:0003293;3.84e-50;6!UBERON:0003294;3.84e-50;6!UBERON:0010047;3.84e-50;6!UBERON:0003408;3.84e-50;6!UBERON:0000167;3.84e-50;6!UBERON:0001736;1.84e-34;1!UBERON:0001831;3.61e-34;1!UBERON:0001567;3.61e-34;1!UBERON:0001301;7.06e-34;1!UBERON:0001041;4.67e-22;14!UBERON:0004089;7.67e-18;2!UBERON:0000007;1.07e-17;2!UBERON:0001954;1.07e-17;2!UBERON:0003022;1.07e-17;2!UBERON:0002421;1.07e-17;2!UBERON:0002600;1.07e-17;2!UBERON:0000161;1.75e-16;19!UBERON:0000166;1.75e-16;19!UBERON:0006947;2.89e-12;3!UBERON:0004054;2.89e-12;3!UBERON:0000165;1.92e-11;28!UBERON:0002365;3.38e-10;31!UBERON:0002330;3.38e-10;31!UBERON:0003296;1.57e-09;4!UBERON:0010133;1.57e-09;4!UBERON:0005904;1.57e-09;4!UBERON:0004921;1.36e-08;33!UBERON:0000349;7.01e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.04e-66,2;UBERON:0001044,3.84e-50,6;UBERON:0003293,3.84e-50,6;UBERON:0003294,3.84e-50,6;UBERON:0010047,3.84e-50,6;UBERON:0000167,3.84e-50,6;UBERON:0001736,1.84e-34,1;UBERON:0006298,1.84e-34,1;UBERON:0001831,3.61e-34,1;UBERON:0001567,3.61e-34,1;UBERON:0008801,3.61e-34,1;UBERON:0001301,5.05e-34,1;UBERON:0003408,1.68e-30,10;UBERON:0004089,7.67e-18,2;UBERON:0001954,1.07e-17,2;UBERON:0003022,1.07e-17,2;UBERON:0002421,1.07e-17,2;UBERON:0002600,1.07e-17,2;UBERON:0000007,1.27e-17,2;UBERON:0000166,2.38e-14,22;UBERON:0006947,2.59e-12,3;UBERON:0004054,2.59e-12,3;UBERON:0000165,4.48e-11,29;UBERON:0000930,4.48e-11,29;UBERON:0007023,7.60e-11,114;UBERON:0002365,2.08e-10,31;UBERON:0002330,2.08e-10,31;UBERON:0005904,1.44e-09,4;UBERON:0002530,1.52e-09,59;UBERON:0003296,1.70e-09,4;UBERON:0010133,1.70e-09,4;UBERON:0002553,2.88e-09,61;UBERON:0000161,4.60e-09,36;UBERON:0000349,7.01e-08,5;UBERON:0001444,7.75e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0.173624994933292,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0.394584402849391,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,1.7472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0.0674035438541849,0,0,1.59045937961861,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0.425149840203366,0,0,0,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.0675375846183947,0.781078098613847,0.620060389503552,0.0634158101939068,0,3.83780436800028,0.496211178389294,0.703484977438482,0,0,0,0.606965604236632,1.13831095675649,0,0,0,0.271878931907327,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0.207216164163037,0,0,13.7672754822489,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0.233939463462106,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.392616934229891,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,25.6888398706543,0.286679166302903,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.103432995861895,0.213233981900981,0,0,0,0,0.190941474834495,0.202117188958219,0.217716747896961,0.342233301085281,0.0673520530145875,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |||
|short_description=p13@SMAD9 | |||
}} |
Revision as of 17:21, 11 January 2014
Short description: | p13@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SMAD9_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | -142bp_to_AK311686_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.04e-66 | 2 |
saliva-secreting gland | 3.84e-50 | 6 |
gland of oral region | 3.84e-50 | 6 |
gland of foregut | 3.84e-50 | 6 |
oral gland | 3.84e-50 | 6 |
oral cavity | 3.84e-50 | 6 |
submandibular gland | 1.84e-34 | 1 |
submandibular gland primordium | 1.84e-34 | 1 |
parotid gland | 3.61e-34 | 1 |
cheek | 3.61e-34 | 1 |
parotid gland primordium | 3.61e-34 | 1 |
epididymis | 5.05e-34 | 1 |
gland of gut | 1.68e-30 | 10 |
midface | 7.67e-18 | 2 |
Ammon's horn | 1.07e-17 | 2 |
lobe parts of cerebral cortex | 1.07e-17 | 2 |
hippocampal formation | 1.07e-17 | 2 |
limbic lobe | 1.07e-17 | 2 |
pituitary gland | 1.27e-17 | 2 |
oral opening | 2.38e-14 | 22 |
male genital duct | 2.59e-12 | 3 |
internal male genitalia | 2.59e-12 | 3 |
mouth | 4.48e-11 | 29 |
stomodeum | 4.48e-11 | 29 |
adult organism | 7.60e-11 | 114 |
exocrine gland | 2.08e-10 | 31 |
exocrine system | 2.08e-10 | 31 |
duct of male reproductive system | 1.44e-09 | 4 |
gland | 1.52e-09 | 59 |
gland of diencephalon | 1.70e-09 | 4 |
neuroendocrine gland | 1.70e-09 | 4 |
anatomical cavity | 2.88e-09 | 61 |
orifice | 4.60e-09 | 36 |
limbic system | 7.01e-08 | 5 |
subdivision of head | 7.75e-07 | 49 |