FFCP PHASE1:Hg19::chr13:54842617..54842628,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr13:54842617..54842628,+ | |||
|id=chr13:54842617..54842628,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.76e-66!5;CL:0000039!6.03e-30!7;CL:0000586!6.03e-30!7;CL:0000540!6.81e-21!6;CL:0000031!6.81e-21!6;CL:0000404!6.81e-21!6;CL:0000047!7.74e-16!8;CL:0000148!1.18e-12!10;CL:0000541!1.18e-12!10;CL:0000147!3.35e-09!14;CL:0002535!9.19e-08!2;CL:0000133!1.25e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;9.51e-82;5!CL:0002321;1.83e-27;15!CL:0000540;1.05e-25;6!CL:0000404;1.05e-25;6!CL:0000148;1.50e-15;10!CL:0000147;2.72e-11;14!CL:0000039;3.11e-10;7!CL:0000586;3.11e-10;7!CL:0000710;4.46e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.51e-82,5;CL:0000540,1.01e-25,6;CL:0000031,1.01e-25,6;CL:0000404,1.01e-25,6;CL:0000047,1.76e-19,8;CL:0000148,1.50e-15,10;CL:0000541,1.50e-15,10;CL:0000147,2.72e-11,14;CL:0000039,3.11e-10,7;CL:0000586,3.11e-10,7;CL:0000133,1.19e-09,59;CL:0000710,4.46e-08,20;CL:0000221,6.50e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.05e-25;6!UBERON:0009117;1.97e-07;10!UBERON:0005564;1.97e-07;10 | |||
|ontology_enrichment_disease=DOID:3095!6.44e-15!22;DOID:2994!6.44e-15!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.44e-07;22!DOID:2994;2.44e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.47e-07,22;DOID:2994,2.47e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.93e-26!8;UBERON:0003135!3.29e-19!11;UBERON:0000991!3.29e-10!21;UBERON:0009196!3.29e-10!21;UBERON:0009117!3.29e-10!21;UBERON:0005564!3.29e-10!21;UBERON:0004176!9.32e-10!22;UBERON:0003101!9.32e-10!22;UBERON:0000079!9.32e-10!22;UBERON:0006955!9.19e-08!2;UBERON:0004801!9.19e-08!2;UBERON:0003133!9.73e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;7.35e-10;49!UBERON:0000473;4.54e-09;8!UBERON:0003135;7.82e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.54e-09,8;UBERON:0003135,7.82e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.90408054746046,4.24095258628753,10.4574548582567,5.28671380578389,22.4565557279309,15.3290490811849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6640176195266,24.7570985875021,19.5256958873717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.038425832013,0,1.52983244612973,0.534434810531121,3.76769088092864,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:54842617..54842628,+ | |||
}} |
Revision as of 17:55, 11 January 2014
Short description: | p@chr13:54842617..54842628, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:54842617..54842628, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.51e-82 | 5 |
neuron | 1.01e-25 | 6 |
neuroblast | 1.01e-25 | 6 |
electrically signaling cell | 1.01e-25 | 6 |
neuronal stem cell | 1.76e-19 | 8 |
melanocyte | 1.50e-15 | 10 |
melanoblast | 1.50e-15 | 10 |
pigment cell | 2.72e-11 | 14 |
germ line cell | 3.11e-10 | 7 |
germ cell | 3.11e-10 | 7 |
neurectodermal cell | 1.19e-09 | 59 |
neurecto-epithelial cell | 4.46e-08 | 20 |
ectodermal cell | 6.50e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
testis | 4.54e-09 | 8 |
male reproductive organ | 7.82e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.47e-07 | 22 |
germ cell cancer | 2.47e-07 | 22 |