FFCP PHASE1:Hg19::chr16:89628797..89628803,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=6137 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10303 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=19bp_to_ENST00000472354_5end | |||
|coexpression_cluster_id=C193 | |||
|description=CAGE_peak_3_at_RPL13_5end | |||
|id=chr16:89628797..89628803,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.94e-16!679;CL:0000004!2.94e-16!679;CL:0000255!2.94e-16!679;CL:0000012!9.35e-16!682;CL:0000055!1.81e-14!180;CL:0002371!4.59e-13!591;CL:0000003!8.62e-13!722;CL:0000144!7.17e-11!625;CL:0000183!1.26e-08!59;CL:0000680!2.56e-08!57;CL:0000056!2.56e-08!57;CL:0000355!2.56e-08!57;CL:0000187!4.20e-08!54;CL:0000393!3.33e-07!60;CL:0000211!3.33e-07!60;CL:0000220!7.60e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002596;3.51e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002596,3.24e-08,2;CL:0000359,7.45e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.84e-10!83;UBERON:0002329!6.84e-10!83;UBERON:0003077!6.84e-10!83;UBERON:0003059!6.84e-10!83;UBERON:0007282!6.84e-10!83;UBERON:0009618!6.84e-10!83;UBERON:0007285!6.84e-10!83;UBERON:0004290!9.66e-09!70;UBERON:0000490!1.75e-07!138;UBERON:0000486!3.18e-07!82;UBERON:0005256!4.00e-07!143;UBERON:0001134!5.55e-07!61;UBERON:0002036!5.55e-07!61;UBERON:0003082!5.55e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0005396;3.51e-08;2!UBERON:0001637;6.34e-07;42!UBERON:0003509;6.34e-07;42!UBERON:0004572;6.34e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.02e-08,42;UBERON:0003509,1.02e-08,42;UBERON:0004572,1.02e-08,42;UBERON:0005396,3.24e-08,2;UBERON:0004535,4.04e-08,109;UBERON:0002049,4.35e-08,78;UBERON:0007798,4.35e-08,78;UBERON:0002329,5.54e-08,71;UBERON:0003059,5.54e-08,71;UBERON:0007282,5.54e-08,71;UBERON:0004290,5.54e-08,71;UBERON:0009618,5.54e-08,71;UBERON:0007503,6.18e-08,78;UBERON:0003077,8.03e-08,72;UBERON:0007285,8.03e-08,72;UBERON:0007500,8.96e-08,59;UBERON:0001981,8.96e-08,59;UBERON:0004537,8.96e-08,59;UBERON:0006965,8.96e-08,59;UBERON:0001009,8.99e-08,112;UBERON:0007524,1.15e-07,73;UBERON:0000055,1.88e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,0,0.655324116390517,0,0.74259811776028,0.331397375727916,0,0,0,0,3.20114750999649,0.204000691244253,0.626909442956176,2.0036519099174,0.273748850145768,0.125542639594803,0.229240217243854,0.164201178899891,0.0787107813136792,0,0,0,0,0.90361775633475,0,2.09161441566814,1.70603078984906,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0.473447805734733,0,0,0,0,0.270803863765016,0,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0.906474741580529,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0.670700859703636,0.255725123687061,1.0843174571537,1.50401373190767,0.434539556882471,0,0,1.13441780596881,0,0.087834785693126,0.327447688744282,1.09288586487763,0,0,0,0,0,0,0,0.79504962946682,0,2.08284300964557,0.56530794192401,0,0.275118041940067,1.8809546988313,0.258416759169329,0,0,2.01414658554573,0.760272105718513,0,1.10298924103761,0,0.803697554556718,0,0.225222960966644,0,3.79706263827252,0.183201743930407,0,0,1.3082821564276,0,0.633152558322899,0,0,0.354668382198357,0.560677600142307,4.2699598291882,0,0,0.134710672069688,0.163461903113459,0.454072282934794,0,0.70296429550139,0,1.1409436430889,0.149448680551801,1.17434498643765,0.323745888736263,0.280901613404497,1.22492502752936,0.368502951935304,0.103325781175765,0,0,2.73048408581408,0,2.18836948140286,0.125118519871964,0.831192346452549,0,0.612975591598039,0.150238058906597,0.794025282120147,0,0.213557388818567,0.211931901159562,0,0.721367704669072,0,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.368199594569197,0.484938170456436,0,0.604512589365842,1.01736355386293,0.386521706326594,0,0,0,0,0,0.10366105501537,0.504641701751257,0.36497735907583,0,1.28648187638577,6.90674606762403,0,0,0.591534000199219,0.337169380156203,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0.404493924480493,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,0.514703430895577,0.109750285408626,0,0.100528972411631,0.462942225792648,0.325808305310325,0,0,0.34779121492523,0,0.144366447761074,0,0.761016608938393,0.790204397959275,0.858486162094873,0.246217006087397,0,0,0,0,0.141775097242386,0.358234090811393,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,1.17217447210047,1.71072446022705,0,0,0,0.448524337381443,0.43596006883328,0.7333828582095,0,10.7296933755565,0,0,0,3.85811061393213,0,0.532844358032199,0.714889968290738,0,0.823240336780769,1.30294473717494,0,0.791951872933429,0,0,0,0,0,2.10833939483032,0,0,0,0.289562613335158,0,0.537182889719687,0.224170287987055,0.197030760201927,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0.36807447515742,0,0.271265023699736,0,0.356857977594324,0.157702415033935,0.117141414992713,0,0,0,1.32845119707087,0.368738337083406,0.695068915744663,0.979005787313703,0,0,0,0,0.303127571446259,1.66435439510497,0,0,0,0,0,0,0,0,0.925258162815933,0.177561725313127,2.54594183642808,1.03850885836724,0.697262270759755,0.362578348774867,0,0.0920809889358963,0.803701137152247,0.546273504020151,0,0,0.616122696835318,3.92174884588428,0,0.105551628892876,0,0,0,0,1.08378575017541,0.501689773854853,0.764628819135115,0,0.447749509444357,0.877039506583738,1.0457418040996,1.28225062558195,0.328014645699706,0.325378394664303,0,0,0,0,0,0,1.35339005608971,0.308097234229289,0.460511024178389,0.551346289938122,1.18162269355101,0.290033387828457,0.255679882248303,0.979352392114111,0,0.192190067365106,0,0.10115778085555,0,0,2.7881490806424,1.84820148105653,1.06461206063404,0.869932992075073,0.18532421910392,0,0.744316738719335,0.632758849437452,0.190630193923825,0.511795582622668,0,4.45484547096312,3.92474320099615,0.899362287916574,0,0.706874414074119,2.83055474202642,0,0,0.975267478179181,0,0,0.818999468447914,0.707027159768564,0,4.41092274836899,0,0,0,0,0.608731130888112,1.54911749049875,1.69017361519345,0.860468113224309,0.196498082026242,0.35667105148125,4.61189383291777,0,0.658589785919804,2.27683904259429,0,1.15466535270614,2.68120910214315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0.245040215981032,0.743212700502875,0.721346064882224,0.284567373393656,0.318852545457645,0,0.191505370132367,0.211673582723883,0,0,0,0.156679895773023,0,0,0.481764225311099,0.605399121573143,0,0,0,0.223676107892416,0,0.390776190804081,0,0,0,0,0,0,0,0.36408156524854,0.111443384277478,0.284136146806413,0,0.296964680832639,0,0,0,0.111308705022906,0.494411622680279,0.211125408127993,0,0,0,0.102268682502155,0.123084805461069,0,0.359473404589307,0.179021174675609,0.511572370226872,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183195186803725,0,1.02193298195737,0.156980256395025,0.166211681900156,0,0,0.167821586975843,0.189753732724185,0.158936578980379,0.421996129056054,0.652931232636591,0.989471500037586,0.216388639742091,0,0,0,2.6686901581256,1.60633120630454,2.50612678813093,0,0,0,0.182454789215666,0.19566461893209,1.21390189767046,0,0,0,0,0.300646838828985,0.414752765588989,0,0.330991955875499,0,0,0,0.554698692052555,0,0.293977192243133,1.21882889212564,0,0.171986032471617,0.774050650312681,0.511625219603299,0.410577285266046,0,0.0882561266915003,0,0.137041924646751,0.397429223405979,0,0.586654148204409,0,0,0,0,0.343609788497747,0,0,0,0,0.271808412147228,0.209205692624666,1.01998217636322,0.577901179803038,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0.236349546921671,0,0.202210631562555,0.196854963029498,0.338693328263138,0,0,0,0.275078873194468,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0.246277562248017,0.511164065356265,0.339936274560377,0,0,0,0,1.19760786519031,0,0,0,0,0,0.197611631897944,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0.28984205722165,0.597019211547496,0,0.554805861502613,0,0,0,0,0,0.310874401165561,0,0,0,0,0.829412415681711,0,0,0,0,0,0.181848659202559,0,0,0,0.400027764663154,0.343395705182793,0.336749488765919,0,0,0,0.521988583930423,0.226705925512272,0.694567422971502,0,0,0,0,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0.422624246717254,0.19998739585493,0.640150378164845,0.172214979660816,0,0.184105950251841,0.279759015438889,0.622077260032973,0,0,0.157265941855896,0,0,0,0.123935764259002,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.183428598521679,0.115525666150338,0.381382095467167,2.0710797781803,0.397832444232549,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0.230467975111559,0,0,0,1.18193840883968,0.778619813244484,0,0,0,0,0,0,0,0.158013611732727,0.464965701472501,0.521574816907738,0,0,0,0,0,0.354996002191696,0.170426809518315,0,0,0,0,0.223710863595585,0.294450700845729,0,0,0,0,0,0,0.397901550322736,0,0.45178432815584,0,0,0,0,0,0,0.235676547101626,0,0,0,0.169927114687817,0,0.128915775947154,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0.606229585745915,1.07185652062471,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0.213454691755431,0,0,0,0,0,0,0,0 | |||
|short_description=p3@RPL13 | |||
}} |
Revision as of 12:49, 20 January 2014
Short description: | p3@RPL13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RPL13_5end |
Coexpression cluster: | C193_Mesenchymal_Adipocyte_mature_Cardiac_heart_CD14CD16_CD14 |
Association with transcript: | 19bp_to_ENST00000472354_5end |
EntrezGene: | RPL13 |
HGNC: | 10303 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the carotid artery | 3.24e-08 | 2 |
vascular associated smooth muscle cell | 7.45e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
artery | 1.02e-08 | 42 |
arterial blood vessel | 1.02e-08 | 42 |
arterial system | 1.02e-08 | 42 |
carotid artery segment | 3.24e-08 | 2 |
cardiovascular system | 4.04e-08 | 109 |
vasculature | 4.35e-08 | 78 |
vascular system | 4.35e-08 | 78 |
somite | 5.54e-08 | 71 |
presomitic mesoderm | 5.54e-08 | 71 |
presumptive segmental plate | 5.54e-08 | 71 |
dermomyotome | 5.54e-08 | 71 |
trunk paraxial mesoderm | 5.54e-08 | 71 |
epithelial vesicle | 6.18e-08 | 78 |
paraxial mesoderm | 8.03e-08 | 72 |
presumptive paraxial mesoderm | 8.03e-08 | 72 |
epithelial tube open at both ends | 8.96e-08 | 59 |
blood vessel | 8.96e-08 | 59 |
blood vasculature | 8.96e-08 | 59 |
vascular cord | 8.96e-08 | 59 |
circulatory system | 8.99e-08 | 112 |
dense mesenchyme tissue | 1.15e-07 | 73 |
vessel | 1.88e-07 | 68 |