FFCP PHASE1:Hg19::chr19:47220200..47220229,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25865 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17293 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BZL6 | |||
|association_with_transcript=154bp_to_ENST00000291281,ENST00000433867,NM_001079880,NM_001079881,NM_016457,uc002pfh.2,uc002pfi.2,uc002pfj.2,uc002pfk.2,uc010xye.1_5end | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_3_at_PRKD2_5end | |||
|id=chr19:47220200..47220229,- | |||
|ontology_enrichment_celltype=CL:0002139!1.29e-17!24;CL:0000115!2.75e-16!35;CL:0002078!1.30e-14!44;CL:0000071!1.11e-13!18;CL:0002546!1.11e-13!18;CL:0000213!7.28e-12!57;CL:0000215!7.28e-12!57;CL:1000413!1.45e-07!9;CL:0000076!2.12e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.34e-30;24!CL:0000115;1.48e-26;36!CL:0000071;2.79e-23;18!CL:0002078;2.68e-16;45!CL:1000413;2.62e-12;9!CL:0000213;6.20e-12;58!CL:0000215;6.20e-12;58!CL:0002543;5.76e-09;6!CL:0002544;9.23e-09;6!CL:0002138;1.30e-08;6!CL:0002188;2.33e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.21e-31,36;CL:0002139,2.67e-30,24;CL:0002078,6.97e-26,45;CL:0000071,3.07e-23,18;CL:0002546,3.07e-23,18;CL:0000213,1.01e-18,58;CL:0000215,1.01e-18,58;CL:1000413,2.66e-12,9;CL:0002543,5.93e-09,6;CL:0002544,9.09e-09,6;CL:0005020,1.35e-08,6;CL:0002138,1.35e-08,6;CL:0005022,1.35e-08,6;CL:0002188,2.14e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002546;2.79e-23;18!CL:0005022;1.30e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.11e-13!18;UBERON:0004638!1.11e-13!18;UBERON:0004852!1.11e-13!18;UBERON:0004111!2.66e-11!241;UBERON:0000487!7.06e-11!22;UBERON:0007023!1.10e-09!115;UBERON:0006914!8.15e-09!25;UBERON:0000055!2.10e-08!69;UBERON:0000025!2.19e-08!194;UBERON:0000477!5.52e-08!286;UBERON:0003914!1.19e-07!118;UBERON:0003915!1.45e-07!9;UBERON:0004700!1.45e-07!9;UBERON:0001917!1.45e-07!9;UBERON:0003103!1.90e-07!69;UBERON:0001008!2.93e-07!45;UBERON:0006554!7.94e-07!44;UBERON:0001981!8.61e-07!60;UBERON:0007500!8.61e-07!60;UBERON:0004537!8.61e-07!60;UBERON:0006965!8.61e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.79e-23;18!UBERON:0001986;2.79e-23;18!UBERON:0004852;2.79e-23;18!UBERON:0000487;9.49e-18;22!UBERON:0006914;8.53e-15;25!UBERON:0003915;2.62e-12;9!UBERON:0004700;2.62e-12;9!UBERON:0001917;2.62e-12;9!UBERON:0000490;5.02e-12;33!UBERON:0000922;6.82e-08;49!UBERON:0002465;1.43e-07;10!UBERON:0000055;2.07e-07;65!UBERON:0001638;2.16e-07;9!UBERON:0003920;2.16e-07;9!UBERON:0004582;2.16e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,3.07e-23,18;UBERON:0001986,3.07e-23,18;UBERON:0004852,3.07e-23,18;UBERON:0000487,1.02e-17,22;UBERON:0006914,9.05e-15,25;UBERON:0000055,2.79e-14,68;UBERON:0003914,2.17e-12,117;UBERON:0003915,2.66e-12,9;UBERON:0004700,2.66e-12,9;UBERON:0001917,2.66e-12,9;UBERON:0004872,6.40e-12,83;UBERON:0002049,5.72e-11,78;UBERON:0007798,5.72e-11,78;UBERON:0007500,7.38e-11,59;UBERON:0001981,7.38e-11,59;UBERON:0004537,7.38e-11,59;UBERON:0006965,7.38e-11,59;UBERON:0004535,2.91e-10,109;UBERON:0001009,3.29e-10,112;UBERON:0003103,3.71e-08,68;UBERON:0004111,5.49e-08,240;UBERON:0002465,1.28e-07,10;UBERON:0001638,2.26e-07,9;UBERON:0003920,2.26e-07,9;UBERON:0004582,2.26e-07,9;UBERON:0003887,2.30e-07,12;UBERON:0005172,4.92e-07,54;UBERON:0005173,4.92e-07,54;UBERON:0000025,5.25e-07,192 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0.737201809504527,2.79120467188971,0,0.263766978228454,0.123766352960047,0,0,1.20538905604795,2.19093027116212,0.487932798790507,0.492484232307152,0.612002073732759,0,0.572471974262113,0.684372125364421,0.502170558379211,0.534893840235659,0.410502947249729,0.865818594450472,0,0,0.154816123316076,1.83884244895785,1.204823675113,0.369754010166788,0.774672005803016,0.853015394924529,1.46800219667424,0,0.200544447470142,0,0,0,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0.639337125799041,0,0,0,0,1.13477044938228,0,0,0,0,0,0.368277635987565,0.316462387440884,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,1.09227722252426,0.889509253863555,1.28019066769952,0.400395987036012,0,0.661044872784862,1.90810750907073,1.70763890732835,1.76171156811282,1.91136614062614,2.64342657158052,1.68152568894461,0.263384084775077,0.196709770113833,0,0.205601498999509,0.668745981562712,0.32592226663359,0,0,0.111410456885174,0,0.221533894583621,0,0.640456598628376,0.130059347559878,0.657751618414705,0.552700035571697,0.579606171470105,0,0.802622484269139,1.04535523804977,0.679856056185397,0,0,0,0.318565414324097,0.651083453856419,0.950452044448374,0.602300476311091,0.511946444617674,0,0.710331756132051,0.821127996921047,0.201606743224732,0.534880391567015,0,0,0,1.53435074212236,0,0,0.289693037921647,0,0,0.472674085820339,0.443458794925128,0.614843499851882,1.24430121722827,0.364295288292542,1.11235332835329,0,0,0.132957960518865,0,0,0,9.54059555360184,9.46258054616737,19.0927275884177,11.8714667804042,12.5849830862972,10.1793675517825,10.2407533603037,35.9199295245367,27.03823596419,32.8026200509377,21.7527831238939,6.0821768457481,37.8296189199663,8.08858776760911,22.6839745406893,15.3595532648617,18.4114085553459,14.1890465408986,13.7984973719295,20.8838445104988,13.7401307947805,0,0,0.872188104285069,0.496971951695318,1.01304409331664,0.132409180813219,0.573673241497627,0.354668382198357,1.68203280042692,0,0,0,1.75123873690594,1.9615428373615,0,0,0,0,2.85235910772225,0.149448680551801,0,0,0,0.204154171254893,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.453728732640084,0.358779271377724,0,0,0,0,0,0,0.168776332241266,0.194874010322397,0.252433774244115,0,0.323292113637624,0,0.10075209822764,0.339121184620975,0.57978255948989,0,0.286804595389004,5.2448693635726,2.91565490307268,4.88014560051977,5.28671380578389,4.03713361401005,2.91981887260664,0,0,0,0,0.721879481669586,0.118306800039844,0,0,0,0,0,0,0.196221465125346,0,50.9327263691007,46.2797853551371,0.8231480226628,1.47008711385542,1.26755034821831,0,0,0.882926198829301,0.245976877086227,0,0.329250856225877,1.1240175325762,0.100528972411631,0.370353780634118,0.651616610620649,1.03993478527958,0,0,0.587043471179108,6.35212370148725,6.94478268864916,4.18559134916116,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0.179117045405697,0.290633938513962,0.383382679165211,5.91195885475132,0,0.414656231081544,0.288239906833923,0.75745460055828,0,0.381988425558278,0,0,0,0,0,0.224262168690721,0.43596006883328,0.36669142910475,0.258543431515556,0,4.22651376278,0,1.04007436911366,0,2.83698264046557,0.266422179016099,0.142977993658148,0.542621605391443,0,1.95441710576241,0,0,0.301439377059586,0,0.499864955910285,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0.224170287987055,0,0,0.513372145118994,1.52456774533478,1.30139853857622,0.773288812777695,0.167516265334349,0,1.49801404789436,5.9832291840805,2.48649308061621,0,0,0,0.207970861530807,0,0,0.117141414992713,0.601892199455438,0,0,0,0.184369168541703,0,0,0,0.82707210449155,0,0.426910231213777,0.303127571446259,0,0,0,0,0,0.128139149255701,0,0,0,0.462629081407967,0.177561725313127,0,0,0.116210378459959,0.846016147141356,2.6065841139427,0.276242966807689,0.459257792658427,0,0.262248829918848,0,0.0770153371044148,1.56869953835371,1.46139224653261,0,29.5706798584331,18.7103075804167,9.06846847628985,57.0640834954071,0.812839312631559,0.501689773854853,0.254876273045038,0.831076008928724,1.34324852833307,0,0,0,0.656029291399411,0.325378394664303,1.854738209659,0.0915694648183434,0.082509499920588,1.14853107599234,2.60024098414608,0,0.386682873168488,0.154048617114644,0.15350367472613,0,0.322260734604821,0,0.170453254832202,0.534192213880424,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0.62962469366128,0,1.84820148105653,0.532306030317022,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0.78494864019923,0,0,0.117812402345686,0.404364963146632,0,0.421258456238981,0.48763373908959,3.65570234446927,0,0.136499911407986,0.565621727814851,0,0,0,0,0,0.655894752046633,0,0.92947049429925,0.281695602532241,0,0,0,0,0,0,0,0,0.0962221127255121,0,1.08890984861323,2.7301702225266,2.15252686335615,1.68471475667626,0.886860307073351,0,1.01489521846434,0.764637207142375,0.569647187174163,0.238231775457789,0,1.29694662238543,1.08006287447623,0,2.13648142254946,0.962479855263359,0.980160863924127,0,0.43280763892933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| |||
|short_description=p3@PRKD2 | |||
}} |
Revision as of 00:05, 21 January 2014
Short description: | p3@PRKD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRKD2_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 154bp_to_ENST00000291281, ENST00000433867, NM_001079880, NM_001079881, NM_016457, uc002pfh.2, uc002pfi.2, uc002pfj.2, uc002pfk.2, uc010xye.1_5end |
EntrezGene: | PRKD2 |
HGNC: | 17293 |
UniProt: | Q9BZL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.21e-31 | 36 |
endothelial cell of vascular tree | 2.67e-30 | 24 |
meso-epithelial cell | 6.97e-26 | 45 |
blood vessel endothelial cell | 3.07e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.07e-23 | 18 |
lining cell | 1.01e-18 | 58 |
barrier cell | 1.01e-18 | 58 |
endothelial cell of artery | 2.66e-12 | 9 |
vein endothelial cell | 5.93e-09 | 6 |
aortic endothelial cell | 9.09e-09 | 6 |
lymphangioblast | 1.35e-08 | 6 |
endothelial cell of lymphatic vessel | 1.35e-08 | 6 |
vascular lymphangioblast | 1.35e-08 | 6 |
glomerular endothelial cell | 2.14e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 3.07e-23 | 18 |
endothelium | 3.07e-23 | 18 |
cardiovascular system endothelium | 3.07e-23 | 18 |
simple squamous epithelium | 1.02e-17 | 22 |
squamous epithelium | 9.05e-15 | 25 |
vessel | 2.79e-14 | 68 |
epithelial tube | 2.17e-12 | 117 |
endothelial tube | 2.66e-12 | 9 |
arterial system endothelium | 2.66e-12 | 9 |
endothelium of artery | 2.66e-12 | 9 |
splanchnic layer of lateral plate mesoderm | 6.40e-12 | 83 |
vasculature | 5.72e-11 | 78 |
vascular system | 5.72e-11 | 78 |
epithelial tube open at both ends | 7.38e-11 | 59 |
blood vessel | 7.38e-11 | 59 |
blood vasculature | 7.38e-11 | 59 |
vascular cord | 7.38e-11 | 59 |
cardiovascular system | 2.91e-10 | 109 |
circulatory system | 3.29e-10 | 112 |
compound organ | 3.71e-08 | 68 |
anatomical conduit | 5.49e-08 | 240 |
lymphoid system | 1.28e-07 | 10 |
vein | 2.26e-07 | 9 |
venous blood vessel | 2.26e-07 | 9 |
venous system | 2.26e-07 | 9 |
intraembryonic coelom | 2.30e-07 | 12 |
abdomen element | 4.92e-07 | 54 |
abdominal segment element | 4.92e-07 | 54 |
tube | 5.25e-07 | 192 |