FFCP PHASE1:Hg19::chr4:41540197..41540212,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22998 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=6bp_to_ENST00000511496,uc003gvz.3,uc003gwa.3_5end | |||
|coexpression_cluster_id=C2792 | |||
|description=CAGE_peak_10_at_LIMCH1_5end | |||
|id=chr4:41540197..41540212,+ | |||
|ontology_enrichment_celltype=CL:0000077!2.43e-10!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;8.64e-12;19!CL:0000136;2.98e-08;13!CL:0002334;6.19e-07;12!CL:0002580;6.91e-07;3!CL:0002615;9.62e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,8.07e-12,19;CL:0002334,4.80e-07,12;CL:0000136,5.78e-07,15;CL:0002580,7.35e-07,3;CL:0002615,8.76e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.51e-12;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.36e-32!115;UBERON:0001049!1.13e-11!57;UBERON:0005068!1.13e-11!57;UBERON:0006241!1.13e-11!57;UBERON:0007135!1.13e-11!57;UBERON:0000064!1.22e-10!219;UBERON:0001737!4.22e-10!9;UBERON:0003075!1.05e-09!86;UBERON:0007284!1.05e-09!86;UBERON:0002346!1.03e-08!90;UBERON:0001017!1.46e-08!82;UBERON:0005743!2.83e-08!86;UBERON:0001557!3.19e-08!19;UBERON:0000955!3.42e-08!69;UBERON:0006238!3.42e-08!69;UBERON:0002616!3.55e-08!59;UBERON:0004457!1.35e-07!12;UBERON:0000042!1.35e-07!12;UBERON:0002780!2.41e-07!41;UBERON:0001890!2.41e-07!41;UBERON:0006240!2.41e-07!41;UBERON:0000062!3.80e-07!511;UBERON:0003688!4.13e-07!6;UBERON:0002358!4.13e-07!6;UBERON:0003684!4.13e-07!6;UBERON:0001178!4.13e-07!6;UBERON:0000477!4.91e-07!286;UBERON:0003080!5.19e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.56e-17;9!UBERON:0001557;6.56e-17;9!UBERON:0002298;2.03e-11;6!UBERON:0003688;2.16e-11;6!UBERON:0002358;2.16e-11;6!UBERON:0003684;2.16e-11;6!UBERON:0001178;2.16e-11;6!UBERON:0004457;2.70e-07;9!UBERON:0000042;2.70e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.89e-17,9;UBERON:0001557,2.06e-12,19;UBERON:0003688,1.25e-11,6;UBERON:0002358,1.25e-11,6;UBERON:0003684,1.25e-11,6;UBERON:0001178,1.25e-11,6;UBERON:0002298,2.08e-11,6;UBERON:0007023,1.83e-10,114;UBERON:0004457,8.06e-10,12;UBERON:0000042,8.06e-10,12;UBERON:0003076,5.85e-09,15;UBERON:0003057,5.85e-09,15;UBERON:0008947,2.86e-08,38;UBERON:0003258,2.86e-08,38;UBERON:0000065,2.96e-07,54 | |||
|phase1_expression=3.45188920614058,2.5692062866918,2.81908808191942,9.00659685178174,3.12872766099101,5.23403114460221,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.973269740605272,0.0945348171640679,0,0,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0.33472061276467,0.402829317109147,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0.423863802319124,0,0,0.515281080091258,0.37223371266318,1.0126579934476,3.89748020644795,0.504867548488229,0.184099797284599,0,0,0.302256294682921,0,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,4.37735160147422,4.55178663210875,7.23033089650446,5.5146986366197,2.39667388501647,4.98268300133303,3.7752766284846,3.72820783738158,2.30848294167834,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0.26593811658487,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0.144781306667579,0,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,6.20269519546942,6.90578879796281,2.24528075546459,2.81906128362542,7.67560873600055,1.93024705372329,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.863663664408557,0,0,0,0,0,0,0,0,0,0,0,4.73988653579522,0.183138929636687,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0.145016693914229,0,3.11612124763581,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0.405820753925408,0.30982349809975,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,4.23647103495506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0.890894042497916,0.921482106297696,0,0.703347082052564,0.667852230137435,0,0,1.39473591775749,0.276283915531148,0,0.306806047506464,0,0,0.269605053441981,0,0,0.690503839458535,0,2.22273980289274,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.723578631752448,0,0.331737779793674,0.295547618953547,1.09692698576986,6.6452462746584,0.41827123283581,0.615602068030377,1.36730467016401,0,0,0,1.91400695839152,0.732780747214898,6.39641731222362,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.606610196826093,9.63093176758547,0.234264445725339,0,0.19566461893209,0,0,0,0,2.14834370736859,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.872901148395775,0,1.35588444468319,0,0,0.253243183823515,0.195551382734803,0.0801588202515337,0.426905989478705,0.39961921916426,0,0,0,0,7.82790974062225,1.17847017308398,3.12579673969312,0.313808538937,0,0,1.80126086612937,1.9166753044879,0,4.72741985561953,0,2.51354161145029,4.12488763221031,2.87149209830726,1.39775300349294,4.29226048136571,4.24025769139558,2.08268764708851,1.08089965062721,0,0,0,0,0,0,0,0.544813624446302,0,0,0,0,0,0.607495566580247,0,0.472834243795189,0.681909645754975,0,0.35857467866569,3.45447355175002,2.1440859791201,9.26928758511604,0,0.542999601753713,0,0,0,0,0,0,1.02586563574658,0,3.61992277812342,4.36367585750877,0,0,7.79548111744171,37.2574203086208,6.62782488555513,0,0,0,0,1.08803560673895,0.7520696820681,0.612691153526923,0.327872630709804,0,0,0.488105059607853,1.3771002377715,3.44045517414043,2.5513681853476,4.65723022060376,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0.50313580350515,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,1.60011105865261,0,0,1.26184898228651,1.54095864325843,1.07220795687463,1.30497145982606,1.81364740409818,0.463044948647668,8.3210479532199,2.68633261622231,7.72003617902431,4.60496504115285,0.176689145945881,3.08662461233464,3.7167336943676,0.512483037175893,3.10887307558079,5.1656192550155,0.691292180758654,0,0,0,0,8.8478247151339,0,0,0,0,2.83757976783418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963438376446893,0,0.638535436228605,1.64093091392604,0,0.414943514785307,0.645902582527404,0,0,0,0.733714394086716,1.03973099535304,0,0,0,1.65462722368366,0,0,0,2.45657876265145,0,0.675375846183947,0,0.620060389503552,0.443910671357348,0,0,1.48863353516788,0,0,0.535701835878287,2.01770233331294,0,0.227662191351298,0.975726071789027,0,1.54339208493677,2.03909198930495,0.328863867814245,0,0,0.706437835654626,0.157115589916002,2.5224494698241,0,0,0,1.42953088353313,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0.111855431797792,0,0,9.71143255781842,3.59319823996865,0,0.971421986118279,0,0.596852325484105,0,0,0,0,0.308696632431779,0.437119121007915,0,0.980593287015622,0,5.30032861210352,5.34683520588755,1.2679671827502,0.679708458751268,12.8757967632399,14.8897721218963,0,0,2.11736923029415,0,0.7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| |||
|short_description=p10@LIMCH1 | |||
}} |
Revision as of 00:51, 22 January 2014
Short description: | p10@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LIMCH1_5end |
Coexpression cluster: | C2792_lung_Preadipocyte_Adipocyte_mesothelioma_spleen_mucinous_skeletal |
Association with transcript: | 6bp_to_ENST00000511496, uc003gvz.3, uc003gwa.3_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 8.07e-12 | 19 |
preadipocyte | 4.80e-07 | 12 |
fat cell | 5.78e-07 | 15 |
preadipocyte of the breast | 7.35e-07 | 3 |
adipocyte of omentum tissue | 8.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.89e-17 | 9 |
upper respiratory tract | 2.06e-12 | 19 |
omentum | 1.25e-11 | 6 |
peritoneum | 1.25e-11 | 6 |
abdominal cavity | 1.25e-11 | 6 |
visceral peritoneum | 1.25e-11 | 6 |
brainstem | 2.08e-11 | 6 |
adult organism | 1.83e-10 | 114 |
cavity lining | 8.06e-10 | 12 |
serous membrane | 8.06e-10 | 12 |
posterior neural tube | 5.85e-09 | 15 |
chordal neural plate | 5.85e-09 | 15 |
respiratory primordium | 2.86e-08 | 38 |
endoderm of foregut | 2.86e-08 | 38 |
respiratory tract | 2.96e-07 | 54 |