FFCP PHASE1:Hg19::chr8:10588174..10588200,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83595 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18196 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BT81 | |||
|association_with_transcript=-152bp_to_ENST00000304501,NM_031439,uc003wtf.2_5end | |||
|description=CAGE_peak_3_at_SOX7_5end | |||
|id=chr8:10588174..10588200,- | |||
|ontology_enrichment_celltype=CL:0000066!8.07e-26!254;CL:0000076!1.42e-15!62;CL:0002139!2.89e-14!24;CL:0002076!5.46e-12!43;CL:0000223!5.87e-11!59;CL:0000115!1.80e-10!35;CL:0000071!2.65e-09!18;CL:0002546!2.65e-09!18;CL:0002078!2.35e-07!44;CL:0002368!5.64e-07!13;CL:0005020!6.85e-07!6;CL:0002138!6.85e-07!6;CL:0005022!6.85e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.19e-22;24!CL:0000115;1.78e-16;36!CL:0002138;3.08e-13;6!CL:0000071;1.23e-12;18!CL:0002078;7.26e-10;45!CL:0002543;1.55e-08;6!CL:0000076;1.64e-08;63!CL:0000622;6.18e-08;5!CL:0002159;2.12e-07;14!CL:0002618;7.61e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.70e-23,24;CL:0000115,5.65e-20,36;CL:0000066,8.04e-20,253;CL:0000076,3.54e-17,63;CL:0002078,7.61e-15,45;CL:0005020,5.55e-14,6;CL:0002138,5.55e-14,6;CL:0005022,5.55e-14,6;CL:0000071,9.35e-13,18;CL:0002546,9.35e-13,18;CL:0000213,1.74e-11,58;CL:0000215,1.74e-11,58;CL:0002321,1.53e-09,250;CL:0002543,1.26e-08,6;CL:0000622,6.02e-08,5;CL:0002159,2.12e-07,14;CL:0002618,6.75e-07,3;CL:0000240,9.47e-07,6;CL:0000311,9.47e-07,6;CL:0000079,9.47e-07,6;CL:0000237,9.47e-07,6;CL:0000036,9.47e-07,6;CL:0000357,9.47e-07,6;CL:0000114,9.47e-07,6 | |||
|ontology_enrichment_development_v019=CL:0005022;3.08e-13;6!CL:0002546;1.23e-12;18 | |||
|ontology_enrichment_disease=DOID:1749!2.65e-09!14;DOID:305!5.81e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.95e-14!169;UBERON:0000925!5.95e-14!169;UBERON:0006595!5.95e-14!169;UBERON:0001007!5.72e-12!155;UBERON:0001555!5.72e-12!155;UBERON:0007026!5.72e-12!155;UBERON:0004111!2.67e-11!241;UBERON:0004921!5.22e-11!129;UBERON:0004185!5.22e-11!129;UBERON:0000477!1.29e-10!286;UBERON:0007023!4.42e-10!115;UBERON:0001041!1.12e-09!98;UBERON:0001004!1.49e-09!72;UBERON:0001986!2.65e-09!18;UBERON:0004638!2.65e-09!18;UBERON:0004852!2.65e-09!18;UBERON:0000077!6.11e-09!130;UBERON:0005911!2.67e-08!82;UBERON:0000119!7.48e-08!312;UBERON:0000065!8.17e-08!53;UBERON:0000487!1.02e-07!22;UBERON:0000483!1.08e-07!309;UBERON:0000467!2.49e-07!625;UBERON:0000480!3.12e-07!626;UBERON:0000161!3.95e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.23e-12;18!UBERON:0001986;1.23e-12;18!UBERON:0004852;1.23e-12;18!UBERON:0002465;4.13e-10;10!UBERON:0000487;7.11e-10;22!UBERON:0001473;1.02e-09;8!UBERON:0004536;1.02e-09;8!UBERON:0006558;1.02e-09;8!UBERON:0000490;2.03e-08;33!UBERON:0006914;2.15e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,9.35e-13,18;UBERON:0001986,9.35e-13,18;UBERON:0004852,9.35e-13,18;UBERON:0002465,1.64e-10,10;UBERON:0001473,2.93e-10,8;UBERON:0004536,2.93e-10,8;UBERON:0006558,2.93e-10,8;UBERON:0000487,5.71e-10,22;UBERON:0006914,1.78e-08,25;UBERON:0000055,4.46e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.90361775633475,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,1.1384259382189,1.76171156811282,0.382273228125229,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.351339142772504,0.654895377488563,1.09288586487763,2.22470665670658,0,0,0,0,0,0,0.79504962946682,0,0.347140501607594,0,1.25849830862972,1.6507082516404,2.08994966536811,1.55050055501597,2.84613010149368,2.00832367658802,3.22263453687318,0.760272105718513,2.68468263302986,2.20597848207521,0.81014194788176,1.96459402224975,1.12264686313085,1.35133776579987,1.53316637465883,0,1.28241220751285,0,0,0.872188104285069,0,0,0,0.286836620748814,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.272746120590835,0.860413786167011,0,0,0,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0,0,0,0.217879444092406,0.237270619111097,0.134831308160164,0,0,1.4763109092493,0,0,1.47008711385542,0,0,0.590789906681404,0,0.122988438543114,0.514703430895577,1.97550513735526,4.49607013030478,2.01057944823262,2.59247646443883,0,0,1.44331342025273,0,0.234817388471643,1.73239737313289,2.77791307545966,1.90254152234598,0,0,0,0,0,0,0.335964256397719,0.567100388969546,0.716468181622786,0.290633938513962,1.15014803749563,0,0,0.414656231081544,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.00253235151642,2.3941057123333,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,1.19065593693561,0.647747748306418,6.16909010761157,0,0,0,0.831076008928724,0,0,0,1.02580050046556,0,0.325378394664303,0.618246069886334,0,0,4.01985876597321,2.60024098414608,0,0.290012154876366,0.154048617114644,0,0,0,0,0,0.0890320356467374,0.991709492165869,1.34533047155574,1.53135254993501,2.32662895967765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.865999014529609,0.670302275535787,1.08890984861323,0.470719003883896,2.15252686335615,0,1.7737206141467,1.37834040124176,0,0,0,0,0,0,0,0,0.106824071127473,0,4.6557641036396,0,2.01976898167023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3441308683503,0,0,0.852408440419239,0.95497793895076,0,0,0,0.281338832821026,1.11308705022906,0,0.211125408127993,0.398495976502139,0.276283915531148,0,0,0,0,0.449341755736634,2.68531762013414,0,1.08507746200627,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0.796554137998498,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0,0,2.37020365273626,1.00035336054936,0,0,0,0.325942115766024,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,1.22206028986725,0,0,0,0.269604531922708,0,0.234264445725339,0.182454789215666,1.36965233252463,0,0.394584402849391,0,0,1.13735843331278,0.450970258243478,0.414752765588989,1.32930774541437,0.661983911750998,0.627865836814451,1.19472429772959,0,0,0,0.391969589657511,2.35059857767087,0.698906672968121,0,0.774050650312681,1.24251839046515,0.903270027585302,0.969890164884194,0,0,0.274083849293502,0,0.253243183823515,0,0,0.426905989478705,0,0.864542502924636,0,0,2.0167671718341,0.745515213392595,0.235694034616795,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0.837847203816763,0,1.43574604915363,0,1.28767814440971,0.223171457441873,0.134366944973453,0,1.16495949527454,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0.77380195455795,0,0.335434687599266,0.551639951094387,0.472091293214983,0.105600336519406,0.537862017998534,0.383830394638891,0,1.32418394073086,0,0,0,0,0,0.410462603746695,0,1.01980882368113,0.732761168390412,1.32506888912221,0.129282956361551,0.13223260174269,0,1.40963004463334,1.38823636338003,1.41483874589699,0,0.496166021811951,0,0,0.638341257770182,0.544017803369474,0.2506898940227,0.306345576763462,0,0.157054096250234,0.886068179966986,0,0.250381861413,0,0.110929051536852,0.248385611765534,6.77908311187531,1.37478448758317,0,0,3.99951893486892,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0.521988583930423,0,0.694567422971502,1.22368352253234,0,0.926404341482917,0,0,0,0.844712203265363,0,0,0,0.138258436151731,0,0,0,0,0.983091635014877,0,0,0,0,0,0,2.09819261579167,3.11038630016486,1.53473245564382,0.431299245586727,0,0,0,0,0,0,0,1.26178792002005,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,1.42769420259154,0.687034029507179,1.53360640352062,0.917142992608395,1.03973099535304,0,0.690359926060101,0,0.300841313397029,0,0,0,0.818859587550484,0.591424344868181,0.135075169236789,0,0.413373593002368,0.126831620387814,0,0,0.9924223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| |||
|short_description=p3@SOX7 | |||
}} |
Revision as of 20:39, 22 January 2014
Short description: | p3@SOX7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOX7_5end |
Coexpression cluster: | NA |
Association with transcript: | -152bp_to_ENST00000304501, NM_031439, uc003wtf.2_5end |
EntrezGene: | SOX7 |
HGNC: | 18196 |
UniProt: | Q9BT81 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.70e-23 | 24 |
endothelial cell | 5.65e-20 | 36 |
epithelial cell | 8.04e-20 | 253 |
squamous epithelial cell | 3.54e-17 | 63 |
meso-epithelial cell | 7.61e-15 | 45 |
lymphangioblast | 5.55e-14 | 6 |
endothelial cell of lymphatic vessel | 5.55e-14 | 6 |
vascular lymphangioblast | 5.55e-14 | 6 |
blood vessel endothelial cell | 9.35e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.35e-13 | 18 |
lining cell | 1.74e-11 | 58 |
barrier cell | 1.74e-11 | 58 |
embryonic cell | 1.53e-09 | 250 |
vein endothelial cell | 1.26e-08 | 6 |
acinar cell | 6.02e-08 | 5 |
general ecto-epithelial cell | 2.12e-07 | 14 |
endothelial cell of umbilical vein | 6.75e-07 | 3 |
stratified squamous epithelial cell | 9.47e-07 | 6 |
keratin accumulating cell | 9.47e-07 | 6 |
stratified epithelial cell | 9.47e-07 | 6 |
keratinizing barrier epithelial cell | 9.47e-07 | 6 |
epithelial fate stem cell | 9.47e-07 | 6 |
stratified epithelial stem cell | 9.47e-07 | 6 |
surface ectodermal cell | 9.47e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 9.35e-13 | 18 |
endothelium | 9.35e-13 | 18 |
cardiovascular system endothelium | 9.35e-13 | 18 |
lymphoid system | 1.64e-10 | 10 |
lymphatic vessel | 2.93e-10 | 8 |
lymph vasculature | 2.93e-10 | 8 |
lymphatic part of lymphoid system | 2.93e-10 | 8 |
simple squamous epithelium | 5.71e-10 | 22 |
squamous epithelium | 1.78e-08 | 25 |
vessel | 4.46e-07 | 68 |