UBERON:0001255: Difference between revisions
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|has_quality= | |has_quality= | ||
|id=UBERON:0001255 | |id=UBERON:0001255 | ||
|is_a=UBERON: | |is_a=UBERON:0000489 ;;UBERON:0002075 ;;UBERON:0004120 ;;UBERON:0006554 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
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|namespace= | |namespace= | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001556 | |part_of=UBERON:0001556 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string |
Revision as of 11:02, 12 September 2014
Name: | urinary bladder | |
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Definition: | "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra." [FMA:15900, Wikipedia:Urinary_bladder] | |
Xrefs: |
| |
Synonyms: |
"bladder" EXACT [] "excretory canal" BROAD [] "vesica urinaria" RELATED LATIN [Wikipedia:Urinary_bladder] | |
Comments: | editor note: consider adding a 'bladder' grouping class | |
Alt_id: | UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 | |
Subset: |
major_organ organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000489(cavitated compound organ),UBERON:0002075(viscus),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
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develops_from: | UBERON:0000164(primitive urogenital sinus) |
part_of: | UBERON:0001556(lower urinary tract) |
Children
derives from: | FF:0010011 (human bladder - adult sample),FF:0011437 (mouse urinary bladder- adult sample) |
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part of: | UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),CL:0002597 (smooth muscle cell of bladder),UBERON:0004645 (urinary bladder urothelium),CL:1001319 (bladder cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
- 879-12E4 (urinary bladder, adult)
Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
- 879-12E4 (urinary bladder, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001255 (urinary bladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.