CL:0000192: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=smooth muscle cell | |name=smooth muscle cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:31, 12 September 2014
| Name: | smooth muscle cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361] | ||
| Xrefs: |
| ||
| Synonyms: |
"myocytes, smooth muscle" EXACT [MESH:D032389] "non-striated muscle cell" EXACT [] "SMCs" EXACT [PMID:9315361] "smooth muscle fiber" EXACT [] | ||
| Alt_id: | CL:0000191 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0008000(non-striated muscle cell),CL:0008007(visceral muscle cell) |
|---|---|
| develops_from: | CL:0000514(smooth muscle myoblast) |
Children
| is a: | CL:0000359 (vascular associated smooth muscle cell),CL:0002504 (enteric smooth muscle cell),CL:0002597 (smooth muscle cell of bladder),CL:0002598 (bronchial smooth muscle cell),CL:0002599 (smooth muscle cell of the esophagus),CL:0002600 (smooth muscle cell of trachea),CL:0002601 (uterine smooth muscle cell),CL:1000487 (smooth muscle cell of prostate) |
|---|---|
| derives from: | FF:0000167 (smooth muscle cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11283-116I5 (Smooth Muscle Cells - Aortic, donor1)
- 11284-116I6 (Smooth Muscle Cells - Brachiocephalic, donor1)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000192 (smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr2:178190171..178190178, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr2:112043522..112043530, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr8:69228447..69228492, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p5@Adamts2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chrX:160839744..160839754, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr17:14827154..14827169, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr17:87574327..87574332, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr17:14802633..14802637, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0 | p@chr17:14827154..14827169, - |
| 9.37e-70 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11 | p@chr6:53359400..53359406, + |
| 9.37e-70 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11 | p@chr6:53359400..53359406, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873 | p@chr11:118164535..118164544, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873 | p6@Npy1r |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873 | p@chrX:160840025..160840037, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873 | p@chr6:128920492..128920498, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873 | p@chrX:160840048..160840057, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873 | p5@Myl12b |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873 | p@chrX:160840025..160840037, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86bee | p1@ENSMUST00000150529 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86bee | p1@ENSMUST00000150529 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391 | p8@Vit |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr10:33816181..33816195, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr17:87544959..87544962, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr17:14817013..14817022, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chrX:160839012..160839023, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391 | p12@Gpr39 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr14:24251697..24251707, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr8:69857155..69857159, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391 | p@chrX:160811352..160811356, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr10:96946110..96946113, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391 | p@chr17:87544959..87544962, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p5@Npy1r |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr10:67598037..67598049, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p5@Npy1r |
| 4.9e-53 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p4@Il6st |
| 4.9e-53 | FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr2:113589030..113589077, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr10:67821185..67821217, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr17:29227828..29227839, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr7:91081998..91082010, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p4@Il6st |
| 4.9e-53 | FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr14:24251717..24251731, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3c | p@chr14:24251717..24251731, + |
| 6.91e-53 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578 | p@chr11:102661517..102661541, - |
| 6.91e-53 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578 | p@chr11:102661517..102661541, - |
| 7.35e-53 | FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67 | p11@Svep1 |
| 7.35e-53 | FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67 | p11@Svep1 |
| 1.1e-52 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1 | p@chrX:160838787..160838800, + |
| 1.1e-52 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1 | p@chrX:160838787..160838800, + |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6 | p5@Phlda3 |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6 | p5@Phlda3 |
| 2.52e-52 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5 | p@chr4:74703497..74703511, + |
| 2.52e-52 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5 | p@chr4:74703497..74703511, + |
| 5.51e-52 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855 | p@chr2:65009852..65009866, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855 | p@chr2:65009852..65009866, - |
| 5.68e-52 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76f | p@chr4:7846444..7846449, - |
| 5.68e-52 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76f | p@chr4:7846444..7846449, - |
| 2.41e-47 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697 | p@chr2:134548872..134548879, - |
| 2.41e-47 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697 | p@chr2:134548872..134548879, - |
| 2.91e-46 | FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6 | p@chr4:74703963..74703975, + |
| 2.91e-46 | FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6 | p@chr4:74703963..74703975, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006 | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006 | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006 | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006 | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006 | p@chr2:178190136..178190151, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006 | p@chr17:14813242..14813246, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006 | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006 | p@chr11:86417559..86417568, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006 | p@chrX:160838683..160838694, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006 | p@chr13:119579287..119579292, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006 | p10@Gpr39 |
| 1.18e-44 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006 | p@chr13:119579287..119579292, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_5a7182626c782173895b1888236af834 | p@chrX:160839663..160839673, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_5a7182626c782173895b1888236af834 | p@chrX:160839663..160839673, + |
