Personal tools

CL:0000763: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000763
|alt_id=
|name=myeloid cell
|namespace=cell;;efo
|def="A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [GOC:add]
|xref=BTO:0001441
|is_a=CL:0000988
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [GOC:add]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000049
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000763
|is_a=CL:0000988
|is_obsolete=
|located_in=
|located_in=
|name=myeloid cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0001441
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:myeloid cell
Namespace:FANTOM
Definition:"A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [GOC:add]
Xrefs:
links:
BTO:0001441


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000988(hematopoietic cell)
develops_from:CL:0000049(common myeloid progenitor)



Children


is a:CL:0000040 (monoblast),CL:0000050 (megakaryocyte-erythroid progenitor cell),CL:0000553 (megakaryocyte progenitor cell),CL:0000556 (megakaryocyte),CL:0000557 (granulocyte monocyte progenitor cell),CL:0000559 (promonocyte),CL:0000764 (erythroid lineage cell),CL:0000766 (myeloid leukocyte),CL:0000831 (mast cell progenitor),CL:0000835 (myeloblast),CL:0000836 (promyelocyte),CL:0001029 (common dendritic progenitor),CL:0002009 (macrophage dendritic cell progenitor),CL:0002028 (basophil mast progenitor cell),CL:0002193 (myelocyte)
derives from:FF:0100740 (myeloid leukemia cell line sample)
develops from:CL:0000453 (Langerhans cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10454-106G4 (chronic myelogenous leukemia cell line:K562)
  • 10699-109G6 (acute myeloid leukemia (FAB M7) cell line:M-MOK)
  • 10704-109H2 (osteoclastoma cell line:Hs 706.T)
  • 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
  • 10718-109I7 (biphenotypic B myelomonocytic leukemia cell line:MV-4-11)
  • 10731-110B2

... further results Mouse (Mus musculus)

  • 10399-106A3 (acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh))
  • 10400-106A4 (acute myeloid leukemia (FAB M5) cell line:THP-1 (revived))
  • 10405-106A9 (acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed))
  • 10409-106B4 (chronic myelogenous leukemia cell line:KU812)
  • 10454-106G4 (chronic myelogenous leukemia cell line:K562)
  • 10699-109G6 (acute myeloid leukemia (FAB M7) cell line:M-MOK)
  • 10704-109H2 (osteoclastoma cell line:Hs 706.T)
  • 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
  • 10718-109I7 (biphenotypic B myelomonocytic leukemia cell line:MV-4-11)
  • 10731-110B2

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000763 (myeloid cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.01e-115FFCP PHASE2:Hg19::chr11:47399920..47399931,-#_3032f4ab69c1699984e81500f0a91621p7@SPI1
5.01e-115FFCP PHASE1:Hg19::chr11:47399920..47399931,-#_3032f4ab69c1699984e81500f0a91621p7@SPI1
6.88e-112FFCP PHASE2:Hg19::chr11:47400045..47400060,-#_dda8c0334841f3908ac6e79aacc144ebp6@SPI1
6.88e-112FFCP PHASE1:Hg19::chr11:47400045..47400060,-#_dda8c0334841f3908ac6e79aacc144ebp6@SPI1
1.87e-103FFCP PHASE2:Hg19::chr8:55074639..55074655,+#_f046fa7bfd5a00d7c3b620a5a33dda5cp@chr8:55074639..55074655, +
1.87e-103FFCP PHASE1:Hg19::chr8:55074639..55074655,+#_f046fa7bfd5a00d7c3b620a5a33dda5cp@chr8:55074639..55074655, +
5.28e-102FFCP PHASE2:Hg19::chr2:109204876..109204889,+#_a1408ce8b82422947413d52f4d4d0d72p7@LIMS1
5.28e-102FFCP PHASE1:Hg19::chr2:109204876..109204889,+#_a1408ce8b82422947413d52f4d4d0d72p7@LIMS1
3.01e-101FFCP PHASE1:Hg19::chr19:54876689..54876707,-#_8e7835a68cea65df22c87de6b0d3ed51p6@LAIR1
3.01e-101FFCP PHASE2:Hg19::chr19:54876689..54876707,-#_8e7835a68cea65df22c87de6b0d3ed51p6@LAIR1
2.92e-100FFCP PHASE2:Hg19::chr17:72528538..72528554,+#_1b693b8a8d37cf2b94c5252f1bee2044p@chr17:72528538..72528554, +
2.92e-100FFCP PHASE1:Hg19::chr17:72528538..72528554,+#_1b693b8a8d37cf2b94c5252f1bee2044p@chr17:72528538..72528554, +
1.71e-99FFCP PHASE2:Hg19::chr11:47400032..47400043,-#_d6742f54535a4069346d0843a03751efp5@SPI1
1.71e-99FFCP PHASE1:Hg19::chr11:47400032..47400043,-#_d6742f54535a4069346d0843a03751efp5@SPI1
3.09e-99FFCP PHASE2:Hg19::chr6:137105174..137105195,+#_45d2cf136ecb1d6cffeb5937035c9f34p@chr6:137105174..137105195, +
3.09e-99FFCP PHASE1:Hg19::chr6:137105174..137105195,+#_45d2cf136ecb1d6cffeb5937035c9f34p@chr6:137105174..137105195, +
3.6e-99FFCP PHASE1:Hg19::chr19:55084438..55084495,+#_6a56fe2896c84a4c4494d8df30134f78p2@LILRA2
3.6e-99FFCP PHASE2:Hg19::chr19:55084438..55084495,+#_6a56fe2896c84a4c4494d8df30134f78p2@LILRA2
5.23e-99FFCP PHASE1:Hg19::chr12:118796868..118796885,-#_341d50233bcb76e3d23a02891291e4cap6@TAOK3
5.23e-99FFCP PHASE2:Hg19::chr12:118796868..118796885,-#_341d50233bcb76e3d23a02891291e4cap6@TAOK3
2.14e-98FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_c2791c8b2bdf9cb89fc6d39c594cfbdap7@EMILIN2
2.14e-98FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_c2791c8b2bdf9cb89fc6d39c594cfbdap7@EMILIN2
2.31e-97FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_0427e415d4d48dff7268cc808ba91e71p@chr15:65174546..65174583, -
2.31e-97FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_0427e415d4d48dff7268cc808ba91e71p@chr15:65174546..65174583, -
4.87e-97FFCP PHASE2:Hg19::chr20:35202667..35202682,+#_2f6973755ecd04aa4af228f7e2e089bap4@C20orf24
4.87e-97FFCP PHASE1:Hg19::chr20:35202667..35202682,+#_2f6973755ecd04aa4af228f7e2e089bap4@C20orf24
1.04e-96FFCP PHASE1:Hg19::chr13:108922429..108922446,+#_78181d48d73a4e2f1a998e6436b8380bp6@TNFSF13B
1.04e-96FFCP PHASE2:Hg19::chr13:108922429..108922446,+#_78181d48d73a4e2f1a998e6436b8380bp6@TNFSF13B
1.68e-96FFCP PHASE1:Hg19::chr11:47399947..47399961,-#_7583cd17241380d7a7d2488a62294d95p3@SPI1
1.68e-96FFCP PHASE2:Hg19::chr11:47399947..47399961,-#_7583cd17241380d7a7d2488a62294d95p3@SPI1
3.76e-96FFCP PHASE2:Hg19::chr17:72709134..72709145,-#_96a91dfb45c6747ca817fdce8b1d74d1p2@CD300LF
3.76e-96FFCP PHASE1:Hg19::chr17:72709134..72709145,-#_96a91dfb45c6747ca817fdce8b1d74d1p2@CD300LF
6.69e-96FFCP PHASE1:Hg19::chr19:36400209..36400286,-#_5f69e00e7234b78e5e9ebe0d5fe2d887p@chr19:36400209..36400286, -
6.69e-96FFCP PHASE2:Hg19::chr19:36400209..36400286,-#_5f69e00e7234b78e5e9ebe0d5fe2d887p@chr19:36400209..36400286, -
7.75e-96FFCP PHASE1:Hg19::chr11:70161074..70161080,-#_09bd364f043110f684231d60a998ab0dp@chr11:70161074..70161080, -
7.75e-96FFCP PHASE2:Hg19::chr11:70161074..70161080,-#_09bd364f043110f684231d60a998ab0dp@chr11:70161074..70161080, -
7.57e-95FFCP PHASE1:Hg19::chr2:109204909..109204928,+#_01f29621db13d456c9252acc85d0f38bp3@LIMS1
7.57e-95FFCP PHASE2:Hg19::chr2:109204909..109204928,+#_01f29621db13d456c9252acc85d0f38bp3@LIMS1
1.23e-94FFCP PHASE1:Hg19::chr6:36665587..36665612,+#_ab43022fabb6f03e773b4abb2cc11756p1@uc010jwl.1
1.23e-94FFCP PHASE2:Hg19::chr6:36665587..36665612,+#_ab43022fabb6f03e773b4abb2cc11756p1@uc010jwl.1
4.83e-94FFCP PHASE2:Hg19::chr22:46998103..46998127,-#_17e73d8063eb5719e4aa570b6da4a18ap@chr22:46998103..46998127, -
4.83e-94FFCP PHASE1:Hg19::chr22:46998103..46998127,-#_17e73d8063eb5719e4aa570b6da4a18ap@chr22:46998103..46998127, -
6.81e-94FFCP PHASE1:Hg19::chr5:57787254..57787271,+#_60fd978dcd489dfbdfcbb92e218e8be0p2@GAPT
6.81e-94FFCP PHASE2:Hg19::chr5:57787254..57787271,+#_60fd978dcd489dfbdfcbb92e218e8be0p2@GAPT
2.22e-93FFCP PHASE1:Hg19::chr6:31583632..31583651,+#_6edf4c530b0086c3889ee811d9633579p5@AIF1
2.22e-93FFCP PHASE2:Hg19::chr6:31583632..31583651,+#_6edf4c530b0086c3889ee811d9633579p5@AIF1
6.0e-93FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_acab667d8d35b062f5aae26349ca6790p@chr16:50313426..50313459, +
6.0e-93FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_acab667d8d35b062f5aae26349ca6790p@chr16:50313426..50313459, +
7.03e-93FFCP PHASE2:Hg19::chr11:47399996..47400014,-#_9a74a9f6e7503bfd622dc71a0f933f88p4@SPI1
7.03e-93FFCP PHASE1:Hg19::chr11:47399996..47400014,-#_9a74a9f6e7503bfd622dc71a0f933f88p4@SPI1
9.92e-93FFCP PHASE2:Hg19::chr17:4642716..4642727,-#_adcaffde615768a14ae916ebf84eb13ep7@CXCL16
9.92e-93FFCP PHASE1:Hg19::chr17:4642716..4642727,-#_adcaffde615768a14ae916ebf84eb13ep7@CXCL16
1.41e-92FFCP PHASE1:Hg19::chr3:98482159..98482172,+#_5a48fd1b96186f573e78a64cbf2260a6p5@ST3GAL6
1.41e-92FFCP PHASE2:Hg19::chr3:98482159..98482172,+#_5a48fd1b96186f573e78a64cbf2260a6p5@ST3GAL6
1.63e-92FFCP PHASE1:Hg19::chr6:137105206..137105220,+#_445b911af367a06e54a0ea9c18640bc8p@chr6:137105206..137105220, +
1.63e-92FFCP PHASE2:Hg19::chr6:137105206..137105220,+#_445b911af367a06e54a0ea9c18640bc8p@chr6:137105206..137105220, +
2.56e-92FFCP PHASE1:Hg19::chr13:108922478..108922493,+#_c22036553d2e987d5c845de6fdb97e21p5@TNFSF13B
2.56e-92FFCP PHASE2:Hg19::chr13:108922478..108922493,+#_c22036553d2e987d5c845de6fdb97e21p5@TNFSF13B
6.37e-92FFCP PHASE1:Hg19::chr22:37257098..37257115,+#_a04cf2f16ee8c6424888d8114bd69e10p3@NCF4
6.37e-92FFCP PHASE2:Hg19::chr22:37257098..37257115,+#_a04cf2f16ee8c6424888d8114bd69e10p3@NCF4
7.64e-92FFCP PHASE2:Hg19::chr19:36398154..36398173,-#_7cc212730177e42767d6078f8a9ebf7fp@chr19:36398154..36398173, -
7.64e-92FFCP PHASE1:Hg19::chr19:36398154..36398173,-#_7cc212730177e42767d6078f8a9ebf7fp@chr19:36398154..36398173, -
1.22e-91FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_bdb46e7965a22e8bc803a201c136b8ebp@chr7:2832730..2832791, +
1.22e-91FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_bdb46e7965a22e8bc803a201c136b8ebp@chr7:2832730..2832791, +
2.01e-91FFCP PHASE1:Hg19::chr17:9923211..9923249,-#_d5a83f6143d1c7610e80e05720b0702ep10@GAS7
2.01e-91FFCP PHASE2:Hg19::chr17:9923211..9923249,-#_d5a83f6143d1c7610e80e05720b0702ep10@GAS7
4.57e-91FFCP PHASE2:Hg19::chr5:176936817..176936841,-#_ac6f80f530c907aaa30f6c7b67b5a8a6p2@DOK3
4.57e-91FFCP PHASE1:Hg19::chr5:176936817..176936841,-#_ac6f80f530c907aaa30f6c7b67b5a8a6p2@DOK3
1.8e-90FFCP PHASE2:Hg19::chr22:37257002..37257013,+#_9ae36270f4b86597ad56e391191dbffep4@NCF4
1.8e-90FFCP PHASE1:Hg19::chr22:37257002..37257013,+#_9ae36270f4b86597ad56e391191dbffep4@NCF4
2.43e-90FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_e644ed8b8bb2e64b7671b42c9f9f2da0p@chr19:18286116..18286156, +
2.43e-90FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_e644ed8b8bb2e64b7671b42c9f9f2da0p@chr19:18286116..18286156, +
3.13e-90FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_d9d2e0cc60c9099a21afecf376496bdbp@chr1:161188661..161188679, +
3.13e-90FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_d9d2e0cc60c9099a21afecf376496bdbp@chr1:161188661..161188679, +
9.35e-90FFCP PHASE2:Hg19::chr6:31554766..31554777,+#_544abaa23d1366efe0ba961eb220cc3ep8@LST1
9.35e-90FFCP PHASE1:Hg19::chr6:31554766..31554777,+#_544abaa23d1366efe0ba961eb220cc3ep8@LST1
9.81e-90FFCP PHASE2:Hg19::chr17:6916789..6916808,+#_7f278895f1a080695a29d96acd113734p10@C17orf49
9.81e-90FFCP PHASE1:Hg19::chr17:6916789..6916808,+#_7f278895f1a080695a29d96acd113734p10@C17orf49
1.04e-89FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_88de00a7c7160664b426a4ddde557525p@chr14:103587759..103587770, +
1.04e-89FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_88de00a7c7160664b426a4ddde557525p@chr14:103587759..103587770, +
2.62e-89FFCP PHASE2:Hg19::chr19:51714319..51714374,+#_b81fb03bcfc29a6ca3eb164803d56da0p@chr19:51714319..51714374, +
2.62e-89FFCP PHASE1:Hg19::chr19:51714319..51714374,+#_b81fb03bcfc29a6ca3eb164803d56da0p@chr19:51714319..51714374, +
4.84e-89FFCP PHASE1:Hg19::chr6:137105237..137105263,+#_2e50278dac9e2fd398f2c310fcb0f0c1p@chr6:137105237..137105263, +
4.84e-89FFCP PHASE2:Hg19::chr6:137105237..137105263,+#_2e50278dac9e2fd398f2c310fcb0f0c1p@chr6:137105237..137105263, +
4.9e-89FFCP PHASE2:Hg19::chr5:176936844..176936870,-#_50304a477484d7c24cb15a4936961021p3@DOK3
4.9e-89FFCP PHASE1:Hg19::chr5:176936844..176936870,-#_50304a477484d7c24cb15a4936961021p3@DOK3
7.3e-89FFCP PHASE2:Hg19::chr22:32034409..32034470,-#_f272f3c3fe91808a8f17b24ca7d49c1bp4@PISD
7.3e-89FFCP PHASE1:Hg19::chr22:32034409..32034470,-#_f272f3c3fe91808a8f17b24ca7d49c1bp4@PISD
8.29e-89FFCP PHASE2:Hg19::chr1:161039459..161039478,-#_cb0ede32e80b6b11034623baa28e848ap4@ARHGAP30
8.29e-89FFCP PHASE1:Hg19::chr1:161039459..161039478,-#_cb0ede32e80b6b11034623baa28e848ap4@ARHGAP30
9.58e-89FFCP PHASE2:Hg19::chr1:161475228..161475239,+#_2205da984eb2fbd99719d400bdd0089ep3@FCGR2A
9.58e-89FFCP PHASE1:Hg19::chr1:161475228..161475239,+#_2205da984eb2fbd99719d400bdd0089ep3@FCGR2A
1.26e-88FFCP PHASE2:Hg19::chr18:5466317..5466374,-#_33f32bd892b6d028cbeb5b1d0ebcfe54p@chr18:5466317..5466374, -
1.26e-88FFCP PHASE1:Hg19::chr18:5466317..5466374,-#_33f32bd892b6d028cbeb5b1d0ebcfe54p@chr18:5466317..5466374, -
1.34e-88FFCP PHASE1:Hg19::chr16:8738211..8738249,+#_91e43ad49b629eb3a73eaa907b50fa8cp@chr16:8738211..8738249, +
1.34e-88FFCP PHASE2:Hg19::chr16:8738211..8738249,+#_91e43ad49b629eb3a73eaa907b50fa8cp@chr16:8738211..8738249, +
2.3e-88FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_ae21dfda9a697b32b98b1c37c5e881cbp@chr19:18285955..18285972, +
2.3e-88FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_ae21dfda9a697b32b98b1c37c5e881cbp@chr19:18285955..18285972, +
3.13e-88FFCP PHASE2:Hg19::chr1:28211791..28211853,+#_026bccf37f14d5f0ef2bad2f30f82608p@chr1:28211791..28211853, +
3.13e-88FFCP PHASE1:Hg19::chr1:28211791..28211853,+#_026bccf37f14d5f0ef2bad2f30f82608p@chr1:28211791..28211853, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000763&oldid=3275335"