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{{CL
{{CL
|id=CL:0002600
|alt_id=
|name=smooth muscle cell of trachea
|namespace=cell
|def="A smooth muscle cell of the trachea." [GOC:tfm]
|xref=
|is_a=CL:0000192
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:50:28Z
|def="A smooth muscle cell of the trachea." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002600
|is_a=CL:0000192
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=smooth muscle cell of trachea
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:50:28Z
|part_of=UBERON:0003126
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:smooth muscle cell of trachea
Namespace:FANTOM
Definition:"A smooth muscle cell of the trachea." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:50:28Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000192(smooth muscle cell)
part_of:UBERON:0003126(trachea)



Children


derives from:FF:0000184 (human smooth muscle cell of trachea sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002600 (smooth muscle cell of trachea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr4:139481823..139481855,+#_41f366cc575253a2df47328395954efcp5@ENST00000502915
8.99e-131FFCP PHASE1:Hg19::chr8:77108050..77108053,-#_41f366cc575253a2df47328395954efcp@chr8:77108050..77108053, -
8.99e-131FFCP PHASE2:Hg19::chr4:139481823..139481855,+#_41f366cc575253a2df47328395954efcp5@ENST00000502915
8.99e-131FFCP PHASE2:Hg19::chr8:77108050..77108053,-#_41f366cc575253a2df47328395954efcp@chr8:77108050..77108053, -
4.52e-50FFCP PHASE1:Hg19::chr2:128224913..128224918,+#_ef0be3602612e47ef392ef4e16e1b056p1@ENST00000454503
4.52e-50FFCP PHASE2:Hg19::chr6:55739493..55739502,-#_ef0be3602612e47ef392ef4e16e1b056p6@AB527577, p6@CU693346
4.52e-50FFCP PHASE2:Hg19::chr2:128224913..128224918,+#_ef0be3602612e47ef392ef4e16e1b056p1@ENST00000454503
4.52e-50FFCP PHASE1:Hg19::chr6:55739493..55739502,-#_ef0be3602612e47ef392ef4e16e1b056p6@AB527577, p6@CU693346
1.57e-37FFCP PHASE1:Hg19::chr19:34787674..34787690,-#_847a02b0cd48de095a958317098e483fp1@ENST00000431093
1.57e-37FFCP PHASE2:Hg19::chr19:34787674..34787690,-#_847a02b0cd48de095a958317098e483fp1@ENST00000431093
4.29e-34FFCP PHASE1:Hg19::chr17:59479934..59479943,+#_43f1b715caa9a4a21cb8b9b56a68284fp@chr17:59479934..59479943, +
4.29e-34FFCP PHASE2:Hg19::chr17:59479934..59479943,+#_43f1b715caa9a4a21cb8b9b56a68284fp@chr17:59479934..59479943, +
5.04e-34FFCP PHASE1:Hg19::chr6:134070066..134070077,+#_760e93aaabf85551c7baac4311ed9a89p@chr6:134070066..134070077, +
5.04e-34FFCP PHASE2:Hg19::chr6:134070066..134070077,+#_760e93aaabf85551c7baac4311ed9a89p@chr6:134070066..134070077, +
7.05e-34FFCP PHASE1:Hg19::chr21:46790685..46790698,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr21:46790685..46790698, +
7.05e-34FFCP PHASE1:Hg19::chr17:15686350..15686359,+#_afd8f00d6e5c886fd2da7c60b799d606p4@IL6STP1
7.05e-34FFCP PHASE2:Hg19::chr21:46790685..46790698,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr21:46790685..46790698, +
7.05e-34FFCP PHASE1:Hg19::chr17:79966642..79966666,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr17:79966642..79966666, +
7.05e-34FFCP PHASE1:Hg19::chr16:86612092..86612099,+#_afd8f00d6e5c886fd2da7c60b799d606p6@FOXL1
7.05e-34FFCP PHASE1:Hg19::chr8:43046621..43046633,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr8:43046621..43046633, +
7.05e-34FFCP PHASE2:Hg19::chr17:15686350..15686359,+#_afd8f00d6e5c886fd2da7c60b799d606p4@IL6STP1
7.05e-34FFCP PHASE2:Hg19::chr16:86612092..86612099,+#_afd8f00d6e5c886fd2da7c60b799d606p6@FOXL1
7.05e-34FFCP PHASE2:Hg19::chr17:79966642..79966666,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr17:79966642..79966666, +
7.05e-34FFCP PHASE2:Hg19::chr8:43046621..43046633,+#_afd8f00d6e5c886fd2da7c60b799d606p@chr8:43046621..43046633, +
1.6e-27FFCP PHASE1:Hg19::chr17:74533899..74533909,+#_2839ec616b301dc4bb56e9d08c84565ep5@PRCD
1.6e-27FFCP PHASE2:Hg19::chr17:74533899..74533909,+#_2839ec616b301dc4bb56e9d08c84565ep5@PRCD
7.14e-26FFCP PHASE2:Hg19::chr18:47087390..47087399,+#_8edd30b81c309bad51b27d762c0435f3p7@LIPG
7.14e-26FFCP PHASE2:Hg19::chr2:187615989..187616000,+#_8edd30b81c309bad51b27d762c0435f3p@chr2:187615989..187616000, +
7.14e-26FFCP PHASE1:Hg19::chr18:12977031..12977043,+#_8edd30b81c309bad51b27d762c0435f3p@chr18:12977031..12977043, +
7.14e-26FFCP PHASE1:Hg19::chr6:55739305..55739315,-#_8edd30b81c309bad51b27d762c0435f3p4@AB527577, p4@CU693346
7.14e-26FFCP PHASE2:Hg19::chr18:12977031..12977043,+#_8edd30b81c309bad51b27d762c0435f3p@chr18:12977031..12977043, +
7.14e-26FFCP PHASE2:Hg19::chr6:55739305..55739315,-#_8edd30b81c309bad51b27d762c0435f3p4@AB527577, p4@CU693346
7.14e-26FFCP PHASE1:Hg19::chr18:47087390..47087399,+#_8edd30b81c309bad51b27d762c0435f3p7@LIPG
7.14e-26FFCP PHASE1:Hg19::chr2:187615989..187616000,+#_8edd30b81c309bad51b27d762c0435f3p@chr2:187615989..187616000, +
9.18e-26FFCP PHASE1:Hg19::chr8:20125747..20125758,-#_3d9199359728aa7459aea32394c9551fp@chr8:20125747..20125758, -
9.18e-26FFCP PHASE2:Hg19::chr8:20125747..20125758,-#_3d9199359728aa7459aea32394c9551fp@chr8:20125747..20125758, -
1.85e-25FFCP PHASE2:Hg19::chr8:128387795..128387801,+#_ff77ad39159ad96b6ec6ca4c5d6c17e8p@chr8:128387795..128387801, +
1.85e-25FFCP PHASE1:Hg19::chr8:128387795..128387801,+#_ff77ad39159ad96b6ec6ca4c5d6c17e8p@chr8:128387795..128387801, +
1.7e-21FFCP PHASE2:Hg19::chr17:29335535..29335575,-#_120750d26785f00279599eff6d6d299cp@chr17:29335535..29335575, -
1.7e-21FFCP PHASE1:Hg19::chr17:29335535..29335575,-#_120750d26785f00279599eff6d6d299cp@chr17:29335535..29335575, -
2.31e-21FFCP PHASE1:Hg19::chr17:46671154..46671167,-#_e48f345788ced93b0550a269c6294cf5p4@HOXB5
2.31e-21FFCP PHASE2:Hg19::chr17:46671154..46671167,-#_e48f345788ced93b0550a269c6294cf5p4@HOXB5
4.66e-21FFCP PHASE1:Hg19::chr8:16613036..16613043,-#_c43c4ab41dbaea3a319948304f6627a7p@chr8:16613036..16613043, -
4.66e-21FFCP PHASE2:Hg19::chr8:16613036..16613043,-#_c43c4ab41dbaea3a319948304f6627a7p@chr8:16613036..16613043, -
4.66e-21FFCP PHASE1:Hg19::chr14:105297526..105297531,-#_c43c4ab41dbaea3a319948304f6627a7p1@RPS26P49
4.66e-21FFCP PHASE2:Hg19::chr14:105297526..105297531,-#_c43c4ab41dbaea3a319948304f6627a7p1@RPS26P49
6.96e-21FFCP PHASE1:Hg19::chr11:299519..299533,-#_5f5d923ca7425ae47224fc4737579fb1p1@IFITM5
6.96e-21FFCP PHASE2:Hg19::chr11:299519..299533,-#_5f5d923ca7425ae47224fc4737579fb1p1@IFITM5
1.29e-20FFCP PHASE1:Hg19::chr5:141703713..141703724,-#_85261c69134d4c27e5b99c490065c7a3p9@SPRY4
1.29e-20FFCP PHASE2:Hg19::chr5:141703713..141703724,-#_85261c69134d4c27e5b99c490065c7a3p9@SPRY4
7.2e-20FFCP PHASE2:Hg19::chr19:11306638..11306657,-#_499b55fb3898b5391f657fb8ade6e922p13@KANK2
7.2e-20FFCP PHASE1:Hg19::chr19:11306638..11306657,-#_499b55fb3898b5391f657fb8ade6e922p13@KANK2
2.17e-19FFCP PHASE1:Hg19::chr1:17914878..17914890,+#_a83609f84683e27eeb37c03fcbd22024p12@ARHGEF10L
2.17e-19FFCP PHASE2:Hg19::chr1:17914878..17914890,+#_a83609f84683e27eeb37c03fcbd22024p12@ARHGEF10L
7.67e-18FFCP PHASE1:Hg19::chr17:65440428..65440449,-#_3e4d9df63bf75f2c1f0e34c216c4bed2p@chr17:65440428..65440449, -
7.67e-18FFCP PHASE2:Hg19::chr17:65440428..65440449,-#_3e4d9df63bf75f2c1f0e34c216c4bed2p@chr17:65440428..65440449, -
9.07e-18FFCP PHASE1:Hg19::chr9:73028424..73028427,-#_594f1bafb998fbf4c896128931c12b02p18@KLF9
9.07e-18FFCP PHASE2:Hg19::chr9:73028424..73028427,-#_594f1bafb998fbf4c896128931c12b02p18@KLF9
1.07e-17FFCP PHASE2:Hg19::chr4:100304021..100304034,-#_2308833b97536750cd34ad085e546d55p@chr4:100304021..100304034, -
1.07e-17FFCP PHASE2:Hg19::chr14:76447494..76447508,-#_2308833b97536750cd34ad085e546d55p16@TGFB3
1.07e-17FFCP PHASE1:Hg19::chr22:29965263..29965274,-#_2308833b97536750cd34ad085e546d55p@chr22:29965263..29965274, -
1.07e-17FFCP PHASE2:Hg19::chr22:29965263..29965274,-#_2308833b97536750cd34ad085e546d55p@chr22:29965263..29965274, -
1.07e-17FFCP PHASE1:Hg19::chr3:141105560..141105572,-#_2308833b97536750cd34ad085e546d55p@chr3:141105560..141105572, -
1.07e-17FFCP PHASE1:Hg19::chr4:100304021..100304034,-#_2308833b97536750cd34ad085e546d55p@chr4:100304021..100304034, -
1.07e-17FFCP PHASE1:Hg19::chr1:9302789..9302798,+#_2308833b97536750cd34ad085e546d55p@chr1:9302789..9302798, +
1.07e-17FFCP PHASE1:Hg19::chr14:76447494..76447508,-#_2308833b97536750cd34ad085e546d55p16@TGFB3
1.07e-17FFCP PHASE2:Hg19::chr1:9302789..9302798,+#_2308833b97536750cd34ad085e546d55p@chr1:9302789..9302798, +
1.07e-17FFCP PHASE2:Hg19::chr3:141105560..141105572,-#_2308833b97536750cd34ad085e546d55p@chr3:141105560..141105572, -
1.27e-17FFCP PHASE2:Hg19::chr20:43589109..43589118,-#_eabe3cb94adef0eaafc888e96e43415cp2@TOMM34
1.27e-17FFCP PHASE1:Hg19::chrY:58884631..58884640,+#_eabe3cb94adef0eaafc888e96e43415cp@chrY:58884631..58884640, +
1.27e-17FFCP PHASE2:Hg19::chrY:58884631..58884640,+#_eabe3cb94adef0eaafc888e96e43415cp@chrY:58884631..58884640, +
1.27e-17FFCP PHASE1:Hg19::chr20:43589109..43589118,-#_eabe3cb94adef0eaafc888e96e43415cp2@TOMM34
1.37e-16FFCP PHASE1:Hg19::chr9:73094859..73094866,-#_09e5f5c0a154d896a23e0a6468fabf4dp@chr9:73094859..73094866, -
1.37e-16FFCP PHASE2:Hg19::chr9:73094859..73094866,-#_09e5f5c0a154d896a23e0a6468fabf4dp@chr9:73094859..73094866, -
2.19e-16FFCP PHASE2:Hg19::chr7:27183156..27183167,-#_2b612a0e8e86d6a1ed0a9799ff07faa5p8@HOXA5
2.19e-16FFCP PHASE1:Hg19::chr7:27183156..27183167,-#_2b612a0e8e86d6a1ed0a9799ff07faa5p8@HOXA5
2.56e-16FFCP PHASE1:Hg19::chr12:56389796..56389800,+#_c1a06b1d10d4ceb470cef2eac9da4407p@chr12:56389796..56389800, +
2.56e-16FFCP PHASE2:Hg19::chr12:56389796..56389800,+#_c1a06b1d10d4ceb470cef2eac9da4407p@chr12:56389796..56389800, +
4.65e-16FFCP PHASE2:Hg19::chr4:1161154..1161170,-#_51d35a8a349eced10f93a90dc4952554p@chr4:1161154..1161170, -
4.65e-16FFCP PHASE1:Hg19::chr4:1161154..1161170,-#_51d35a8a349eced10f93a90dc4952554p@chr4:1161154..1161170, -
5.02e-16FFCP PHASE1:Hg19::chr17:46670845..46670856,-#_4673425266fb45700938394efc38d847p8@AB464575
5.02e-16FFCP PHASE2:Hg19::chr17:46670845..46670856,-#_4673425266fb45700938394efc38d847p8@AB464575
5.41e-16FFCP PHASE1:Hg19::chr11:101918136..101918145,+#_71770ba81b3742b10568923ba2bf6323p2@C11orf70
5.41e-16FFCP PHASE2:Hg19::chr11:101918136..101918145,+#_71770ba81b3742b10568923ba2bf6323p2@C11orf70
7.88e-16FFCP PHASE2:Hg19::chr3:123518704..123518728,-#_3f222d24dcb4a2295b7a6c7f1c73b090p28@MYLK
7.88e-16FFCP PHASE1:Hg19::chr3:123518704..123518728,-#_3f222d24dcb4a2295b7a6c7f1c73b090p28@MYLK
2.05e-15FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_6c547a384531e4f380855108d1c80c7dp@chr10:81923378..81923389, -
2.05e-15FFCP PHASE1:Hg19::chr19:11546153..11546168,+#_6c547a384531e4f380855108d1c80c7dp16@PRKCSH
2.05e-15FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_6c547a384531e4f380855108d1c80c7dp@chr10:81923378..81923389, -
2.05e-15FFCP PHASE2:Hg19::chr19:11546153..11546168,+#_6c547a384531e4f380855108d1c80c7dp16@PRKCSH
2.37e-15FFCP PHASE2:Hg19::chr17:42164091..42164102,-#_034573813c4f3b8e01f7678eb761b577p@chr17:42164091..42164102, -
2.37e-15FFCP PHASE1:Hg19::chr10:92178805..92178827,+#_034573813c4f3b8e01f7678eb761b577p@chr10:92178805..92178827, +
2.37e-15FFCP PHASE2:Hg19::chr10:92178805..92178827,+#_034573813c4f3b8e01f7678eb761b577p@chr10:92178805..92178827, +
2.37e-15FFCP PHASE1:Hg19::chr17:42164091..42164102,-#_034573813c4f3b8e01f7678eb761b577p@chr17:42164091..42164102, -
2.74e-15FFCP PHASE1:Hg19::chr7:25400379..25400385,+#_0d8ec0a014e79973fd12ebd44b5ff582p@chr7:25400379..25400385, +
2.74e-15FFCP PHASE2:Hg19::chr7:25400379..25400385,+#_0d8ec0a014e79973fd12ebd44b5ff582p@chr7:25400379..25400385, +
4.8e-15FFCP PHASE2:Hg19::chr7:27154961..27154973,+#_484329547b6f65b5d88103316502a071p1@ENST00000517635
4.8e-15FFCP PHASE1:Hg19::chr7:27154961..27154973,+#_484329547b6f65b5d88103316502a071p1@ENST00000517635
4.95e-15FFCP PHASE1:Hg19::chr12:7260968..7260978,-#_f5578181f114d85c94f0bf7e388266c7p5@C1RL
4.95e-15FFCP PHASE2:Hg19::chr12:7260968..7260978,-#_f5578181f114d85c94f0bf7e388266c7p5@C1RL

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