UBERON:0000065: Difference between revisions
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|located_in= | |located_in= | ||
|name=respiratory tract | |name=respiratory tract | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001004 | |part_of=UBERON:0001004 |
Latest revision as of 17:05, 12 September 2014
Name: | respiratory tract | |
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Namespace: | FANTOM | |
Definition: | "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm] | |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0001005(respiratory airway),UBERON:0004119(endoderm-derived structure) |
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develops_from: | UBERON:0007026(primitive gut),UBERON:0008947(respiratory primordium) |
part_of: | UBERON:0001004(respiratory system) |
Children
part of: | UBERON:0000072 (segment of respiratory tract),UBERON:0000117 (respiratory tube),UBERON:0001737 (larynx),CL:0002368 (respiratory epithelial cell),UBERON:0004802 (respiratory tract epithelium) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10275-104E5
- 10303-104H6
- 10331-105B7
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10275-104E5
- 10303-104H6
- 10331-105B7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000065 (respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data