Personal tools

UBERON:0000065: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=respiratory tract
|name=respiratory tract
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001004
|part_of=UBERON:0001004

Latest revision as of 17:05, 12 September 2014

Name:respiratory tract
Namespace:FANTOM
Definition:"anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
Xrefs:
links:

EHDAA2:0001606
EHDAA:1568
EHDAA:2219
EMAPA:16737
MESH:A.04
OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA
SCTID:361110005

VHOG:0000393

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001005(respiratory airway),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0007026(primitive gut),UBERON:0008947(respiratory primordium)
part_of:UBERON:0001004(respiratory system)



Children

part of:UBERON:0000072 (segment of respiratory tract),UBERON:0000117 (respiratory tube),UBERON:0001737 (larynx),CL:0002368 (respiratory epithelial cell),UBERON:0004802 (respiratory tract epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000065 (respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data