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{{UBERON
{{UBERON
|id=UBERON:0000073
|alt_id=
|name=regional part of nervous system
|namespace=
|def="An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
|xref=ncithesaurus:Nervous_System_Part;;NIF_GrossAnatomy:birnlex_1157;;SCTID:25087005
|is_a=UBERON:0004121
|synonym="part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
|comment=grouping class
|comment=grouping class
|alt_id=
|disjoint_from=
|union_of=
|created_by=Melissa Haendel
|created_by=Melissa Haendel
|obo_creation_date=2009-06-18T09:00:04Z
|def="An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000073
|is_a=UBERON:0000481
|is_obsolete=
|located_in=
|located_in=
|name=regional part of nervous system
|namespace=FANTOM
|obo_creation_date=2009-06-18T09:00:04Z
|part_of=UBERON:0001016
|part_of=UBERON:0001016
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
|union_of=
|xref=ncithesaurus:Nervous_System_Part;;NIF_GrossAnatomy:birnlex_1157;;SCTID:25087005
}}
}}

Latest revision as of 17:05, 12 September 2014

Name:regional part of nervous system
Namespace:FANTOM
Definition:"An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
Xrefs:
links:

ncithesaurus:Nervous_System_Part
NIF_GrossAnatomy:birnlex_1157

SCTID:25087005
Synonyms: "part of nervous system" EXACT [NIF_GrossAnatomy:birnlex_1157]
Comments:grouping class
Created by:Melissa Haendel
Creation date:2009-06-18T09:00:04Z

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000481(multi-tissue structure)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0001948 (regional part of spinal cord),UBERON:0002616 (regional part of brain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000073 (regional part of nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.03e-139FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_da4432861d8611996c67012769efe99ep5@ST8SIA3
1.03e-139FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_da4432861d8611996c67012769efe99ep5@ST8SIA3
1.4e-135FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_12744785d3f2c3d802a5947ba9a38790p3@CTNND2
1.4e-135FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_12744785d3f2c3d802a5947ba9a38790p3@CTNND2
1.47e-135FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_8d0f92af35f7d21b484b92d329e845adp2@RFX4
1.47e-135FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_8d0f92af35f7d21b484b92d329e845adp2@RFX4
1.29e-133FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_ee15c6c6fdebde52ec6ff4ce716f2fd2p1@ENST00000412957
1.29e-133FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_ee15c6c6fdebde52ec6ff4ce716f2fd2p1@ENST00000412957
1.78e-132FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_0ab1b76b12f1e0db7d9b0992b30d17b2p2@GABRG1
1.78e-132FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_0ab1b76b12f1e0db7d9b0992b30d17b2p2@GABRG1
1.89e-132FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_380dfc71f43866418b44d111bd58b961p3@NRXN1
1.89e-132FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_380dfc71f43866418b44d111bd58b961p3@NRXN1
4.31e-132FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_7df86ef191b58995dce21e3e0e3ef39fp@chr5:87439352..87439386, -
4.31e-132FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_7df86ef191b58995dce21e3e0e3ef39fp@chr5:87439352..87439386, -
5.61e-132FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_0fe31d3b1bc6fe2e4a81c58fbdf3267ep17@PRKACB
5.61e-132FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_0fe31d3b1bc6fe2e4a81c58fbdf3267ep17@PRKACB
1.28e-130FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_0b50d3a6a5522f12ae0b8651991deda2p4@APC
1.28e-130FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_0b50d3a6a5522f12ae0b8651991deda2p4@APC
2.58e-130FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_f23624ceb975e8ee183fa5b038491b72p8@CTNND2
2.58e-130FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_f23624ceb975e8ee183fa5b038491b72p8@CTNND2
3.44e-130FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_a9d1f7f2b2bbcb84affab5f932ebea84p1@RFX4
3.44e-130FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_a9d1f7f2b2bbcb84affab5f932ebea84p1@RFX4
6.81e-130FFCP PHASE2:Hg19::chr6:136847393..136847403,-#_05de64c35991fd5c5eee96839b8a7a72p15@MAP7
6.81e-130FFCP PHASE1:Hg19::chr6:136847393..136847403,-#_05de64c35991fd5c5eee96839b8a7a72p15@MAP7
1.57e-129FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_0cc3a589643390d8056a6f328826f390p@chr5:146314142..146314146, -
1.57e-129FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_0cc3a589643390d8056a6f328826f390p@chr5:146314142..146314146, -
3.15e-129FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_0c4a46267db1fe8af08e410db6022e47p7@DTNA
3.15e-129FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_0c4a46267db1fe8af08e410db6022e47p7@DTNA
5.62e-129FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_166d617cf8137fa60386762fa567ef33p2@KCNJ16
5.62e-129FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_166d617cf8137fa60386762fa567ef33p2@KCNJ16
6.58e-129FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_b75709eede26e2bc1805bf3a507915c1p9@PRKACB
6.58e-129FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_b75709eede26e2bc1805bf3a507915c1p9@PRKACB
9.65e-129FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_6172e2b6779a97a1a0ab98ae5ba78318p4@ARHGEF26-AS1
9.65e-129FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_6172e2b6779a97a1a0ab98ae5ba78318p4@ARHGEF26-AS1
6.04e-128FFCP PHASE1:Hg19::chr15:79576178..79576222,-#_b96a434f8a9e948d70c6ce6e6e17906bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.04e-128FFCP PHASE2:Hg19::chr15:79576178..79576222,-#_b96a434f8a9e948d70c6ce6e6e17906bp1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
6.67e-128FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_059606fec18d91c863398f77a8ac62d8p4@RFX4
6.67e-128FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_059606fec18d91c863398f77a8ac62d8p4@RFX4
7.68e-128FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_c42b52beddce76cbf7b63c30c90dbbefp1@LOC100289347
7.68e-128FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_c42b52beddce76cbf7b63c30c90dbbefp1@LOC100289347
1.54e-126FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_a4da7a72e42648b298a70d2b9533d24ep1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.54e-126FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_a4da7a72e42648b298a70d2b9533d24ep1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
1.55e-126FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_1221cca131a5bc99df8de0e028b57c2bp4@SLC1A2
1.55e-126FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_1221cca131a5bc99df8de0e028b57c2bp4@SLC1A2
1.87e-126FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_4e38553aac5e44bf19add2a467c0a2a0p2@CTNND2
1.87e-126FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_4e38553aac5e44bf19add2a467c0a2a0p2@CTNND2
2.32e-126FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_866055af00b1d00e56cec62706405a07p@chr6:80131670..80131724, +
2.32e-126FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_866055af00b1d00e56cec62706405a07p@chr6:80131670..80131724, +
2.35e-126FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_62a5307655248b87703cee41528e7c1cp17@NTRK2
2.35e-126FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_62a5307655248b87703cee41528e7c1cp17@NTRK2
2.47e-126FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_9fbc05f52781bcf17ef7ddc158360c16p9@GPM6B
2.47e-126FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_9fbc05f52781bcf17ef7ddc158360c16p9@GPM6B
6.64e-126FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_6c11ee96c921b7760707466736ce6e76p1@ANKFN1
6.64e-126FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_6c11ee96c921b7760707466736ce6e76p1@ANKFN1
8.82e-126FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_58f50bfb72174291b36614c9c7c64190p3@SFXN5
8.82e-126FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_58f50bfb72174291b36614c9c7c64190p3@SFXN5
1.13e-125FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_236f7f4f7d17fadfba59b4a5bed21a90p@chr15:46702499..46702523, +
1.13e-125FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_236f7f4f7d17fadfba59b4a5bed21a90p@chr15:46702499..46702523, +
1.15e-125FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_6c69f61d58662dc36011c9a293c7e9bbp8@DST
1.15e-125FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_6c69f61d58662dc36011c9a293c7e9bbp8@DST
1.37e-125FFCP PHASE2:Hg19::chr3:167452969..167453019,+#_89a838049e58346d3c9274722549f357p2@SERPINI1
1.37e-125FFCP PHASE1:Hg19::chr3:167452969..167453019,+#_89a838049e58346d3c9274722549f357p2@SERPINI1
1.38e-125FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_db40d2260c7883e4cc045e38f2152668p1@ATP10B
1.38e-125FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_db40d2260c7883e4cc045e38f2152668p1@ATP10B
1.45e-125FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_68f4143f77528f7c5c078cfa88b2dc34p1@GABRG1
1.45e-125FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_68f4143f77528f7c5c078cfa88b2dc34p1@GABRG1
2.45e-125FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_691e0367fd0a88671329dfbdee01b0fep8@PRKCZ
2.45e-125FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_691e0367fd0a88671329dfbdee01b0fep8@PRKCZ
2.7e-125FFCP PHASE1:Hg19::chrX:139794589..139794595,+#_4589fb288c4bdc707f8d5633044c0639p@chrX:139794589..139794595, +
2.7e-125FFCP PHASE2:Hg19::chrX:139794589..139794595,+#_4589fb288c4bdc707f8d5633044c0639p@chrX:139794589..139794595, +
2.73e-125FFCP PHASE2:Hg19::chr14:24047772..24047790,-#_55a0739376228594856debc8edc22467p6@JPH4
2.73e-125FFCP PHASE1:Hg19::chr14:24047772..24047790,-#_55a0739376228594856debc8edc22467p6@JPH4
4.98e-125FFCP PHASE2:Hg19::chr5:161275118..161275138,+#_70e5aefdb73b9f0aef1ffeaeae1436bap3@GABRA1
4.98e-125FFCP PHASE1:Hg19::chr5:161275118..161275138,+#_70e5aefdb73b9f0aef1ffeaeae1436bap3@GABRA1
1.02e-124FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_de6efae33d7175e97429fbb347a4d5c6p@chr7:47420733..47420758, -
1.02e-124FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_de6efae33d7175e97429fbb347a4d5c6p@chr7:47420733..47420758, -
1.87e-124FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_04f73ccdf2256b6c06946aad032bf846p@chr17:7558857..7558903, +
1.87e-124FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_04f73ccdf2256b6c06946aad032bf846p@chr17:7558857..7558903, +
2.2e-124FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_fd61f0bf77ed8879826d9c651b11896ap1@GPR61
2.2e-124FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_fd61f0bf77ed8879826d9c651b11896ap1@GPR61
2.34e-124FFCP PHASE1:Hg19::chr6:29595998..29596020,-#_ddcbe9242233b8a468b1513a4716995fp5@GABBR1
2.34e-124FFCP PHASE2:Hg19::chr6:29595998..29596020,-#_ddcbe9242233b8a468b1513a4716995fp5@GABBR1
4.18e-124FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_c6284fb829aed6308046bddbcbb4c428p2@uc002fch.1
4.18e-124FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_c6284fb829aed6308046bddbcbb4c428p2@uc002fch.1
4.41e-124FFCP PHASE2:Hg19::chr5:11904100..11904112,-#_38c4a6e25efd093cffee79533fc0084bp19@CTNND2
4.41e-124FFCP PHASE1:Hg19::chr5:11904100..11904112,-#_38c4a6e25efd093cffee79533fc0084bp19@CTNND2
5.54e-124FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_a294118a5fab2cf242f43ee2e827e030p3@GABRG1
5.54e-124FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_a294118a5fab2cf242f43ee2e827e030p3@GABRG1
1.31e-123FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_2887d0a05aa1c32da35b99a41d497864p5@AQP4
1.31e-123FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_2887d0a05aa1c32da35b99a41d497864p5@AQP4
1.63e-123FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_5e68234f076a55c9bce70822e934e4fdp2@SRCIN1
1.63e-123FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_5e68234f076a55c9bce70822e934e4fdp2@SRCIN1
1.85e-123FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_9de801b2ec85c0332bf1c6aaa16a3b16p9@MAP2
1.85e-123FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_9de801b2ec85c0332bf1c6aaa16a3b16p9@MAP2
2.38e-123FFCP PHASE1:Hg19::chr5:161494521..161494557,+#_f0cc3a7f937c7a243372be20b891a210p7@GABRG2
2.38e-123FFCP PHASE2:Hg19::chr5:161494521..161494557,+#_f0cc3a7f937c7a243372be20b891a210p7@GABRG2
3.91e-123FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_e084a53080c62f7f9a3a125e80938bdcp2@PAQR6
3.91e-123FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_e084a53080c62f7f9a3a125e80938bdcp2@PAQR6
6.32e-123FFCP PHASE2:Hg19::chr2:73286294..73286310,-#_37153257531c54dc216abdf7a8072051p4@SFXN5
6.32e-123FFCP PHASE1:Hg19::chr2:73286294..73286310,-#_37153257531c54dc216abdf7a8072051p4@SFXN5

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